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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Clemons Jr., W.M."

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Search Summary

This query matches 44 Structures.

Refinements

Structure Determination Methodology

experimental (44)

Scientific Name of Source Organism

	Thermus thermophilus (17)
	Escherichia coli (14)
	Escherichia coli K-12 (4)
	Giardia lamblia ATCC 50803 (3)
	Bacillus subtilis (2)
	Arabidopsis thaliana (1)
	Escherichia phage ID21 (1)
	Escherichia phage phiX174 (1)
	Geobacillus stearothermophilus (1)
	Homo sapiens (1)

More...

Taxonomy

	Bacteria (38)
	Eukaryota (5)
	Monodnaviria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (34)
	ELECTRON MICROSCOPY (9)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (43)
	RNA (19)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (6)
	2.5 - 3.0 (6)
	3.0 - 3.5 (18)
	3.5 - 4.0 (6)
	> 4.5 (6)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (22)
	2005 - 2009 (11)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (3)
	Isomerases (2)
	Translocases (2)

Membrane Protein Annotation

	MemProtMD (15)
	PDBTM (15)
	mpstruc (13)
	OPM (4)

Symmetry Type

	Asymmetric (35)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Low resolution protein structures (6)
	All alpha proteins (15)
	Alpha and beta proteins (a/b) (14)
	All beta proteins (10)
	Membrane and cell surface proteins and peptides (7)
	Peptides (10)
	Small proteins (10)
	Artifacts (5)

AllSelected

1 to 25 of 44 Structures

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1A32 \| pdb_00001a32	Download File View File

RIBOSOMAL PROTEIN S15 FROM BACILLUS STEAROTHERMOPHILUS

Clemons Junior, W.M., Davies, C., White, S.W., Ramakrishnan, V.

(1998) Structure 6: 429-438

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	RIBOSOMAL PROTEIN S15 (protein)

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1EG0 \| pdb_00001eg0	Download File View File

FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME

Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.

(2000) Cell 100: 537-549

Released	2000-03-06
Method	ELECTRON MICROSCOPY 11.5 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 4

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1EMW \| pdb_00001emw	Download File View File

SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS

Allard, P., Rak, A.V., Wimberly, B.T., Clemons Jr., W.M., Kalinin, A., Helgstrand, M., Garber, M.B., Ramakrishnan, V., Hard, T.

(2000) Structure 8: 875-882

Released	2000-08-09
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	S16 RIBOSOMAL PROTEIN (protein)

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1FJG \| pdb_00001fjg	Download File View File

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN

Carter, A.P., Clemons Jr., W.M., Brodersen, D.E., Wimberly, B.T., Morgan-Warren, R.J., Ramakrishnan, V.

(2000) Nature 407: 340-348

Released	2000-09-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	MG, PAR, SCM, SRY, ZN

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1HNW \| pdb_00001hnw	Download File View File

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Brodersen, D.E., Clemons Jr., W.M., Carter, A.P., Morgan-Warren, R., Wimberly, B.T., Ramakrishnan, V.

(2000) Cell 103: 1143-1154

Released	2001-02-21
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	MG, TAC, ZN

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1HNX \| pdb_00001hnx	Download File View File

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN

Brodersen, D.E., Clemons Jr., W.M., Carter, A.P., Morgan-Warren, R., Wimberly, B.T., Ramakrishnan, V.

(2000) Cell 103: 1143-1154

Released	2001-02-21
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	MG, PCY, ZN

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1HNZ \| pdb_00001hnz	Download File View File

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B

Brodersen, D.E., Clemons Jr., W.M., Carter, A.P., Morgan-Warren, R., Wimberly, B.T., Ramakrishnan, V.

(2000) Cell 103: 1143-1154

Released	2001-02-21
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	HYG, MG, ZN

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1HR0 \| pdb_00001hr0	Download File View File

CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT

Carter, A.P., Clemons Jr., W.M., Brodersen, D.E., Morgan-Warren, R.J., Wimberly, B.T., Ramakrishnan, V.

(2001) Science 291: 498-501

Released	2001-01-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 2
Unique Ligands	MG, ZN

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1IBK \| pdb_00001ibk	Download File View File

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Ogle, J.M., Brodersen, D.E., Clemons Jr., W.M., Tarry, M.J., Carter, A.P., Ramakrishnan, V.

(2001) Science 292: 897-902

Released	2001-05-04
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	MG, PAR, ZN

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1IBL \| pdb_00001ibl	Download File View File

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN

Ogle, J.M., Brodersen, D.E., Clemons Jr., W.M., Tarry, M.J., Carter, A.P., Ramakrishnan, V.

(2001) Science 292: 897-902

Released	2001-05-04
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 4
Unique Ligands	MG, PAR, ZN

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1IBM \| pdb_00001ibm	Download File View File

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Ogle, J.M., Brodersen, D.E., Clemons Jr., W.M., Tarry, M.J., Carter, A.P., Ramakrishnan, V.

(2001) Science 292: 897-902

Released	2001-05-04
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 4
Unique Ligands	MG, ZN

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1J5E \| pdb_00001j5e	Download File View File

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Wimberly, B.T., Brodersen, D.E., Clemons Jr., W.M., Morgan-Warren, R., Carter, A.P., Vonrhein, C., Hartsch, T., Ramakrishnan, V.

(2000) Nature 407: 327-339

Released	2002-04-12
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	UNX, ZN

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1N32 \| pdb_00001n32	Download File View File

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin

Ogle, J.M., Murphy IV, F.V., Tarry, M.J., Ramakrishnan, V.

(2002) Cell 111: 721-732

Released	2002-11-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, PAR, ZN

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1N33 \| pdb_00001n33	Download File View File

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Ogle, J.M., Murphy IV, F.V., Tarry, M.J., Ramakrishnan, V.

(2002) Cell 111: 721-732

Released	2002-11-29
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, PAR, ZN

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1N34 \| pdb_00001n34	Download File View File

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Ogle, J.M., Murphy IV, F.V., Tarry, M.J., Ramakrishnan, V.

(2002) Cell 111: 721-732

Released	2002-11-29
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	ZN

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1N36 \| pdb_00001n36	Download File View File

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Ogle, J.M., Murphy IV, F.V., Tarry, M.J., Ramakrishnan, V.

(2002) Cell 111: 721-732

Released	2002-11-29
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	ZN

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1QB2 \| pdb_00001qb2	Download File View File

CRYSTAL STRUCTURE OF THE CONSERVED SUBDOMAIN OF HUMAN PROTEIN SRP54M AT 2.1A RESOLUTION: EVIDENCE FOR THE MECHANISM OF SIGNAL PEPTIDE BINDING

Clemons Jr., W.M., Gowda, K., Black, S.D., Zwieb, C., Ramakrishnan, V.

(1999) J Mol Biology 292: 697-705

Released	1999-10-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HUMAN SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN (protein)

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1QD7 \| pdb_00001qd7	Download File View File

PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT

Clemons Jr., W.M., May, J.L.C., Wimberly, B.T., McCutcheon, J.P., Capel, M.S., Ramakrishnan, V.

(1999) Nature 400: 833-840

Released	1999-08-31
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2

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1RH5 \| pdb_00001rh5	Download File View File

The structure of a protein conducting channel

van den Berg, B., Clemons Jr., W.M., Collinson, I., Modis, Y., Hartmann, E., Harrison, S.C., Rapoport, T.A.

(2004) Nature 427: 36-44

Released	2004-01-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Preprotein translocase secE subunit (protein) Preprotein translocase secY subunit (protein) SecBeta (protein)

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1T16 \| pdb_00001t16	Download File View File

Crystal structure of the bacterial fatty acid transporter FadL from Escherichia coli

van den Berg, B., Black, P.N., Clemons Jr., W.M., Rapoport, T.A.

(2004) Science 304: 1506-1509

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	C8E, CU, LDA

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1T1L \| pdb_00001t1l	Download File View File

Crystal structure of the long-chain fatty acid transporter FadL

van den Berg, B., Black, P.N., Clemons Jr., W.M., Rapoport, T.A.

(2004) Science 304: 1506-1509

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Long-chain fatty acid transport protein (protein)
Unique Ligands	LDA

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1T1M \| pdb_00001t1m	Download File View File

Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome

Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.

(2004) Proc Natl Acad Sci U S A 101: 8900-8905

Released	2004-06-15
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia coli
Macromolecule	ribosome recycling factor (protein) 42-mer fragment of double helix from 16S rRNA (nucleic acid) dodecamer fragment of double helix from 23S rRNA (nucleic acid)

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1T1O \| pdb_00001t1o	Download File View File

Components of the control 70S ribosome to provide reference for the RRF binding site

Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.

(2004) Proc Natl Acad Sci U S A 101: 8900-8905

Released	2004-06-15
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia coli
Macromolecule	19-mer fragment of the 23S rRNA (nucleic acid) 42-mer fragment of double helix from 16S rRNA (nucleic acid) dodecamer fragment of double helix from 23S rRNA (nucleic acid)

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1TF2 \| pdb_00001tf2	Download File View File

Crystal structure of SecA:ADP in an open conformation from Bacillus Subtilis

Osborne, A.R., Clemons Jr., W.M., Rapoport, T.A.

(2004) Proc Natl Acad Sci U S A 101: 10937-10942

Released	2004-08-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus subtilis
Macromolecule	Preprotein translocase secA subunit (protein)
Unique Ligands	ADP, MG