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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Endo, Y."

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Search Summary

This query matches 112 Structures.

Refinements

Structure Determination Methodology

experimental (112)

Scientific Name of Source Organism

	Homo sapiens (53)
	Escherichia coli (12)
	Mus musculus (5)
	Bacillus subtilis subsp. subtilis str. 168 (4)
	Bos taurus (4)
	Corynebacterium glutamicum (4)
	Streptomyces coelicolor A3(2) (4)
	Human herpesvirus 5 strain AD169 (3)
	Pseudomonas putida (3)
	Digitalis lanata (2)

More...

Taxonomy

	Eukaryota (66)
	Bacteria (35)
	Duplodnaviria (10)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (107)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (110)
	RNA (4)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (44)
	2.0 - 2.5 (34)
	2.5 - 3.0 (15)
	3.0 - 3.5 (4)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (9)
	2000 - 2004 (19)
	2005 - 2009 (15)
	2010 - 2014 (18)
	2015 - 2019 (37)
	2020 - 2024 (12)

Enzyme Classification Name

	Oxidoreductases (5)
	Transferases (3)
	Lyases (1)

Symmetry Type

	Cyclic (60)
	Asymmetric (49)
	Dihedral (4)

SCOP Classification

	All beta proteins (20)
	Alpha and beta proteins (a+b) (11)
	Small proteins (7)
	All alpha proteins (5)
	Alpha and beta proteins (a/b) (2)
	Artifacts (6)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 112 Structures

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1A21 \| pdb_00001a21	Download File View File

TISSUE FACTOR (TF) FROM RABBIT

Muller, Y.A., De Vos, A.M.

(1998) Protein Sci 7: 1106-1115

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Oryctolagus cuniculus
Macromolecule	TISSUE FACTOR (protein)

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1AYF \| pdb_00001ayf	Download File View File

BOVINE ADRENODOXIN (OXIDIZED)

Mueller, A., Mueller, J.J., Heinemann, U.

(1998) Structure 6: 269-280

Released	1998-12-30
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bos taurus
Macromolecule	ADRENODOXIN (protein)
Unique Ligands	FES, GOL

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1BJ1 \| pdb_00001bj1	Download File View File

VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH A NEUTRALIZING ANTIBODY

Muller, Y.A., Christinger, H.W., De Vos, A.M.

(1998) Structure 6: 1153-1167

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Fab fragment, heavy chain (protein) Fab fragment, light chain (protein) Vascular endothelial growth factor A (protein)
Unique Ligands	SO4

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1CJE \| pdb_00001cje	Download File View File

ADRENODOXIN FROM BOVINE

Pikuleva, I.A., Tesh, K., Waterman, M.R., Kim, Y.

(2000) Arch Biochem Biophys 373: 44-55

Released	2000-01-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus
Macromolecule	ADRENODOXIN (protein)
Unique Ligands	FES

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1CZ8 \| pdb_00001cz8	Download File View File

VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH AN AFFINITY MATURED ANTIBODY

Chen, Y., Wiesmann, C., Fuh, G., Li, B., Christinger, H.W., McKay, P., de Vos, A.M., Lowman, H.B.

(1999) J Mol Biology 293: 865-881

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	HEAVY CHAIN OF NEUTRALIZING ANTIBODY (protein) LIGHT CHAIN OF NEUTRALIZING ANTIBODY (protein) Vascular endothelial growth factor A (protein)
Unique Ligands	SO4

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1D2S \| pdb_00001d2s	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL LAMININ G-LIKE DOMAIN OF SHBG IN COMPLEX WITH DIHYDROTESTOSTERONE

Grishkovskaya, I., Avvakumov, G.V., Sklenar, G., Dales, D., Hammond, G.L., Muller, Y.A.

(2000) EMBO J 19: 504-512

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	CA, DHT

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1F5F \| pdb_00001f5f	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL G-DOMAIN OF SHBG IN COMPLEX WITH ZINC

Avvakumov, V.A., Muller, Y.A., Hammond, G.L.

(2000) J Biological Chem 275: 25920-25925

Released	2000-09-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	CA, DHT, IPA, ZN

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1JPS \| pdb_00001jps	Download File View File

Crystal structure of tissue factor in complex with humanized Fab D3h44

Faelber, K., Kirchhofer, D., Presta, L., Kelley, R.F., Muller, Y.A.

(2001) J Mol Biology 313: 83-97

Released	2002-02-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	immunoglobulin Fab D3H44, heavy chain (protein) immunoglobulin Fab D3H44, light chain (protein) tissue factor (protein)

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1JPT \| pdb_00001jpt	Download File View File

Crystal Structure of Fab D3H44

Faelber, K., Kirchhofer, D., Presta, L., Kelley, R.F., Muller, Y.A.

(2001) J Mol Biology 313: 83-97

Released	2002-02-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	immunoglobulin Fab D3H44, heavy chain (protein) immunoglobulin Fab D3h44, light chain (protein)

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1K6Q \| pdb_00001k6q	Download File View File

Crystal structure of antibody Fab fragment D3

Faelber, K., Kelley, R.F., Kirchhofer, D., Muller, Y.A.

To be published

Released	2002-04-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin Fab D3, heavy chain (protein) immunoglobulin Fab D3, light chain (protein)

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1KDK \| pdb_00001kdk	Download File View File

THE STRUCTURE OF THE N-TERMINAL LG DOMAIN OF SHBG IN CRYSTALS SOAKED WITH EDTA

Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Muller, Y.A.

(2002) J Mol Biology 318: 621-626

Released	2002-05-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Sex Hormone-Binding Globulin (protein)
Unique Ligands	DHT

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1KDM \| pdb_00001kdm	Download File View File

THE CRYSTAL STRUCTURE OF THE HUMAN SEX HORMONE-BINDING GLOBULIN (TETRAGONAL CRYSTAL FORM)

Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Muller, Y.A.

(2002) J Mol Biology 318: 621-626

Released	2002-05-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	sex hormone-binding globulin (protein)
Unique Ligands	CA, DHT

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1L6U \| pdb_00001l6u	Download File View File

NMR STRUCTURE OF OXIDIZED ADRENODOXIN

Beilke, D., Weiss, R., Lohr, F., Pristovsek, P., Hannemann, F., Bernhardt, R., Rueterjans, H.

(2002) Biochemistry 41: 7969-7978

Released	2002-06-26
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Adrenodoxin 1 (protein)
Unique Ligands	FES

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1LHN \| pdb_00001lhn	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH 5ALPHA-ANDROSTANE-3BETA,17ALPHA-DIOL

Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Catalano, M.G., Muller, Y.A.

(2002) J Biological Chem 277: 32086-32093

Released	2002-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	AON, CA, ZN

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1LHO \| pdb_00001lho	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH 5ALPHA-ANDROSTANE-3BETA,17BETA-DIOL

Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Catalano, M.G., Muller, Y.A.

(2002) J Biological Chem 277: 32086-32093

Released	2002-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	AOM, CA

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1LHU \| pdb_00001lhu	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH ESTRADIOL

Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Catalano, M.G., Muller, Y.A.

(2002) J Biological Chem 277: 32086-32093

Released	2002-10-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	CA, EST

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1LHV \| pdb_00001lhv	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH NORGESTREL

Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Catalano, M.G., Muller, Y.A.

(2002) J Biological Chem 277: 32086-32093

Released	2002-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	CA, IPA, NOG, ZN

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1LHW \| pdb_00001lhw	Download File View File

CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH 2-METHOXYESTRADIOL

Avvakumov, G.V., Grishkovskaya, I., Muller, Y.A., Hammond, G.L.

(2002) J Biological Chem 277: 45219-45225

Released	2002-10-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	SEX HORMONE-BINDING GLOBULIN (protein)
Unique Ligands	CA, ESM, IPA

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1MJV \| pdb_00001mjv	Download File View File

DISULFIDE DEFICIENT MUTANT OF VASCULAR ENDOTHELIAL GROWTH FACTOR A (C51A and C60A)

Muller, Y.A., Heiring, C., Misselwitz, R., Welfle, K., Welfle, H.

(2002) J Biological Chem 277: 43410-43416

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Vascular Endothelial Growth Factor A (protein)

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1MKG \| pdb_00001mkg	Download File View File

DISULFIDE DEFICIENT MUTANT OF VASCULAR ENDOTHELIAL GROWTH FACTOR A (C57A and C102A)

Muller, Y.A., Heiring, C., Misselwitz, R., Welfle, K., Welfle, H.

(2002) J Biological Chem 277: 43410-43416

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Vascular Endothelial Growth Factor A (protein)

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1MKK \| pdb_00001mkk	Download File View File

Disulfide deficient mutant of vascular endothelial growth factor A (C61A and C104A)

Muller, Y.A., Heiring, C., Misselwitz, R., Welfle, K., Welfle, H.

(2002) J Biological Chem 277: 43410-43416

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	Vascular Endothelial Growth Factor A (protein)

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1PDX \| pdb_00001pdx	Download File View File

PUTIDAREDOXIN

Pochapsky, T.C., Jain, N.U., Kuti, M., Lyons, T.A., Heymont, J.

(1999) Biochemistry 38: 4681-4690

Released	1999-05-12
Method	SOLUTION NMR
Organisms	Pseudomonas putida
Macromolecule	PROTEIN (PUTIDAREDOXIN) (protein)
Unique Ligands	FES

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1POW \| pdb_00001pow	Download File View File

THE REFINED STRUCTURES OF A STABILIZED MUTANT AND OF WILD-TYPE PYRUVATE OXIDASE FROM LACTOBACILLUS PLANTARUM

Muller, Y.A., Schulz, G.E.

(1994) J Mol Biology 237: 315-335

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	PYRUVATE OXIDASE (protein)
Unique Ligands	FAD, MG, TPP

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1POX \| pdb_00001pox	Download File View File

THE REFINED STRUCTURES OF A STABILIZED MUTANT AND OF WILD-TYPE PYRUVATE OXIDASE FROM LACTOBACILLUS PLANTARUM

Muller, Y.A., Schulz, G.E.

(1994) J Mol Biology 237: 315-335

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	PYRUVATE OXIDASE (protein)
Unique Ligands	FAD, GOL, MG, NA, TPP

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1RHF \| pdb_00001rhf	Download File View File

Crystal Structure of human Tyro3-D1D2

Heiring, C., Dahlback, B., Muller, Y.A.

(2004) J Biological Chem 279: 6952-6958

Released	2004-03-23
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase receptor TYRO3 (protein)
Unique Ligands	ACT, EPE, ZN

1 to 25 of 112 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A21 | pdb_00001a21

1AYF | pdb_00001ayf

1BJ1 | pdb_00001bj1

1CJE | pdb_00001cje

1CZ8 | pdb_00001cz8

1D2S | pdb_00001d2s

1F5F | pdb_00001f5f

1JPS | pdb_00001jps

1JPT | pdb_00001jpt

1K6Q | pdb_00001k6q

1KDK | pdb_00001kdk

1KDM | pdb_00001kdm

1L6U | pdb_00001l6u

1LHN | pdb_00001lhn

1LHO | pdb_00001lho

1LHU | pdb_00001lhu

1LHV | pdb_00001lhv

1LHW | pdb_00001lhw

1MJV | pdb_00001mjv

1MKG | pdb_00001mkg

1MKK | pdb_00001mkk

1PDX | pdb_00001pdx

1POW | pdb_00001pow

1POX | pdb_00001pox

1RHF | pdb_00001rhf