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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Frosi, Y."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (12)
	Mus musculus (1)
	Phage 13 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (12)
	other sequences (1)
	unclassified bacterial viruses (1)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (5)

Release Date

	2015 - 2019 (7)
	2020 - 2024 (5)

Enzyme Classification Name

Transferases (1)

Symmetry Type

Asymmetric (12)

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1 to 12 of 12 Structures

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Explore in 3D

5ZJY \| pdb_00005zjy	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, B., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) LYS-LYS-ARG-TYR-SER-ARG-2JN-GLN-LEU-LEU-2JN-PHE (protein)
Unique Ligands	MGP

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5ZJZ \| pdb_00005zjz	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4 gamma 1 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	MGT

Explore in 3D

5ZK5 \| pdb_00005zk5	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) LYS-ARG-TYR-SER-ARG-GLU-GLN-LEU-LEU-MK8-PHE-GLN-ARG-MK8 (protein)
Unique Ligands	MGT

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5ZK7 \| pdb_00005zk7	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens
Macromolecule	ACE-ARG-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-LEU-PHE-ARG-NH2 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	CL, GOL, IOD, MGT

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5ZK9 \| pdb_00005zk9	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	ACE-ARG-ILE-ILE-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-LEU-LYS-NH2 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	GOL, MGP, PEG

Explore in 3D

5ZML \| pdb_00005zml	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Yano, J.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	ACE-LYS-LYS-ARG-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-PHE-ARG-ARG (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	EDO, NO3

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6KZU \| pdb_00006kzu	Download File View File

Macrocyclization of an all-D linear peptide improves target affinity and imparts cellular activity: A novel stapled alpha-helical peptide modality

Jiang, S., Brown, C.J.

(2020) Chem Sci 11: 5577-5591

Released	2019-10-16
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens Phage 13
Macromolecule	2JN-DAL-E03-DTY-2JN-DSG-TDF-DGL-MK8-DLE-DLE-2JN (protein) E3 ubiquitin-protein ligase Mdm2 (protein)

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7D6Y \| pdb_00007d6y	Download File View File

eIF4E in Complex with a Disulphide-Free Autonomous VH Domain

Brown, C.J., Frosi, Y., Jiang, S., Lin, Y.C.

To be published

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.668 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH Domain (1C5) (protein)
Unique Ligands	MES, MGO

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7D8B \| pdb_00007d8b	Download File View File

Engineering Disulphide-Free Autonomous Antibody VH Domains to modulate intracellular pathways

Frosi, Y., Lin, Y.C., Jiang, S., Brown, C.J.

(2022) Nat Commun 13: 4854-4854

Released	2021-08-25
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH-S4 (protein)

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7EZW \| pdb_00007ezw	Download File View File

Cyclic Peptide that Interacts with the eIF4E Capped-mRNA Binding Site

Brown, C.J., Ng, S., Frosi, Y.

(2022) RSC Chem Biol 3: 916-930

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ALA-CYS-GLU-MET-GLY-PHE-PHE-GLN-ASP-CYS-GLY (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	NA

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7F07 \| pdb_00007f07	Download File View File

Autonomous VH domain that interacts with eIF4E at the Capped mRNA Binding site.

Brown, C.J., Frosi, Y., Ng, S., Lin, Y.C.

(2022) RSC Chem Biol 3: 916-930

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH domain (VH-DiFCAP-01) (protein)

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7XTP \| pdb_00007xtp	Download File View File

eIF4E in Complex with a Disulphide-Free Autonomous VH Domain

Brown, C.J., Frosi, Y., Jiang, S., Lin, Y.C.

(2022) Nat Commun 13: 4854-4854

Released	2022-07-27
Method	X-RAY DIFFRACTION 1.828 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH-S4ss (protein)
Unique Ligands	MGO

1 to 12 of 12 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5ZJY | pdb_00005zjy

Stapled-peptides tailored against initiation of translation

5ZJZ | pdb_00005zjz

Stapled-peptides tailored against initiation of translation

5ZK5 | pdb_00005zk5

Stapled-peptides tailored against initiation of translation

5ZK7 | pdb_00005zk7

Stapled-peptides tailored against initiation of translation

5ZK9 | pdb_00005zk9

Stapled-peptides tailored against initiation of translation

5ZML | pdb_00005zml

Stapled-peptides tailored against initiation of translation

6KZU | pdb_00006kzu

Macrocyclization of an all-D linear peptide improves target affinity and imparts cellular activity: A novel stapled alpha-helical peptide modality

7D6Y | pdb_00007d6y

eIF4E in Complex with a Disulphide-Free Autonomous VH Domain

7D8B | pdb_00007d8b

Engineering Disulphide-Free Autonomous Antibody VH Domains to modulate intracellular pathways

7EZW | pdb_00007ezw

Cyclic Peptide that Interacts with the eIF4E Capped-mRNA Binding Site

7F07 | pdb_00007f07

Autonomous VH domain that interacts with eIF4E at the Capped mRNA Binding site.

7XTP | pdb_00007xtp

eIF4E in Complex with a Disulphide-Free Autonomous VH Domain

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5ZJY | pdb_00005zjy

5ZJZ | pdb_00005zjz

5ZK5 | pdb_00005zk5

5ZK7 | pdb_00005zk7

5ZK9 | pdb_00005zk9

5ZML | pdb_00005zml

6KZU | pdb_00006kzu

7D6Y | pdb_00007d6y

7D8B | pdb_00007d8b

7EZW | pdb_00007ezw

7F07 | pdb_00007f07

7XTP | pdb_00007xtp