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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fujiwara, T."

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Search Summary

This query matches 138 Structures.

Refinements

Structure Determination Methodology

experimental (138)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (20)
	synthetic construct (16)
	Halobacterium salinarum NRC-1 (14)
	Aequorea victoria (10)
	Homo sapiens (10)
	HIV-1 M:B_HXB2R (8)
	Haloarcula marismortui ATCC 43049 (7)
	Chlamydomonas reinhardtii (6)
	Azotobacter chroococcum NCIMB 8003 (5)
	Komagataeibacter xylinus (4)

More...

Taxonomy

	Eukaryota (41)
	Bacteria (32)
	Riboviria (28)
	Archaea (24)
	other sequences (16)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (109)
	SOLUTION NMR (20)
	ELECTRON MICROSCOPY (5)
	SOLID-STATE NMR (4)

Polymer Entity Type

	Protein (138)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (26)
	2.0 - 2.5 (40)
	2.5 - 3.0 (34)
	3.0 - 3.5 (11)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (30)
	2005 - 2009 (3)
	2010 - 2014 (19)
	2015 - 2019 (24)
	2020 - 2024 (57)

Enzyme Classification Name

	Transferases (31)
	Oxidoreductases (11)
	Isomerases (11)
	Hydrolases (7)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (28)
	mpstruc (24)
	MemProtMD (19)
	OPM (8)

Symmetry Type

	Asymmetric (92)
	Cyclic (43)
	Dihedral (3)

SCOP Classification

	Multi-domain proteins (alpha and beta) (27)
	All alpha proteins (17)
	Alpha and beta proteins (a/b) (31)
	Membrane and cell surface proteins and peptides (14)
	All beta proteins (4)
	Alpha and beta proteins (a+b) (4)
	Artifacts (2)

AllSelected

1 to 25 of 138 Structures

Page 1 of 6

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1EH1 \| pdb_00001eh1	Download File View File

RIBOSOME RECYCLING FACTOR FROM THERMUS THERMOPHILUS

Toyoda, T., Tin, O.F., Ito, K., Fujiwara, T., Kumasaka, T., Yamamoto, M., Garber, M.B., Nakamura, Y.

(2000) RNA 6: 1432-1444

Released	2000-11-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOME RECYCLING FACTOR (protein)

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1EP4 \| pdb_00001ep4	Download File View File

Crystal structure of HIV-1 reverse transcriptase in complex with S-1153

Ren, J., Nichols, C., Bird, L.E., Fujiwara, T., Suginoto, H., Stuart, D.I., Stammers, D.K.

(2000) J Biological Chem 275: 14316-14320

Released	2000-09-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (protein)
Unique Ligands	S11

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1FGJ \| pdb_00001fgj	Download File View File

X-RAY STRUCTURE OF HYDROXYLAMINE OXIDOREDUCTASE

Tanaka, N., Igarashi, N., Moriyama, H.

(1997) Nat Struct Biol 4: 276-284

Released	1998-03-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Nitrosomonas europaea
Macromolecule	HYDROXYLAMINE OXIDOREDUCTASE (protein)
Unique Ligands	HEC, HEM

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1FK9 \| pdb_00001fk9	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ)

Ren, J., Milton, J., Weaver, K.L., Short, S.A., Stuart, D.I., Stammers, D.K.

(2000) Structure 8: 1089-1094

Released	2000-11-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 RT, A-CHAIN (protein) HIV-1 RT, B-CHAIN (protein)
Unique Ligands	EFZ

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1FKO \| pdb_00001fko	Download File View File

CRYSTAL STRUCTURE OF NNRTI RESISTANT K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ)

Ren, J., Milton, J., Weaver, K.L., Short, S.A., Stuart, D.I., Stammers, D.K.

(2000) Structure 8: 1089-1094

Released	2000-11-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 RT, A-CHAIN (protein) HIV-1 RT, B-CHAIN (protein)
Unique Ligands	EFZ

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1FKP \| pdb_00001fkp	Download File View File

CRYSTAL STRUCTURE OF NNRTI RESISTANT K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE

Ren, J., Milton, J., Weaver, K.L., Short, S.A., Stuart, D.I., Stammers, D.K.

(2000) Structure 8: 1089-1094

Released	2000-11-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 RT, A-CHAIN (protein) HIV-1 RT, B-CHAIN (protein)
Unique Ligands	NVP

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1IT1 \| pdb_00001it1	Download File View File

Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F

Harada, E., Fukuoka, Y., Ohmura, T., Fukunishi, A., Kawai, G., Fujiwara, T., Akutsu, H.

(2002) J Mol Biology 319: 767-778

Released	2002-07-10
Method	SOLUTION NMR
Organisms	Nitratidesulfovibrio vulgaris str. 'Miyazaki F
Macromolecule	cytochrome c3 (protein)
Unique Ligands	HEC

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1ITK \| pdb_00001itk	Download File View File

Crystal structure of catalase-peroxidase from Haloarcula marismortui

Yamada, Y., Fujiwara, T., Sato, T., Igarashi, N., Tanaka, N.

(2002) Nat Struct Biol 9: 691-695

Released	2002-08-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haloarcula marismortui
Macromolecule	catalase-peroxidase (protein)
Unique Ligands	CL, HEM, SO4, UNX

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1JKH \| pdb_00001jkh	Download File View File

CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ)

Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.

(2001) J Mol Biology 312: 795-805

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT, A-CHAIN (protein) HIV-1 RT, B-CHAIN (protein)
Unique Ligands	EFZ

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1JLA \| pdb_00001jla	Download File View File

CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH TNK-651

Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.

(2001) J Mol Biology 312: 795-805

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT A-chain (protein) HIV-1 RT B-chain (protein)
Unique Ligands	TNK

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1JLB \| pdb_00001jlb	Download File View File

CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE

Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.

(2001) J Mol Biology 312: 795-805

Released	2001-10-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT A-chain (protein) HIV-1 RT B-chain (protein)
Unique Ligands	NVP

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1JLC \| pdb_00001jlc	Download File View File

CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH PETT-2

Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.

(2001) J Mol Biology 312: 795-805

Released	2001-10-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT A-chain (protein) HIV-1 RT B-chain (protein)
Unique Ligands	FTC

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1JLE \| pdb_00001jle	Download File View File

CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE

Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.

(2001) J Mol Biology 312: 795-805

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT, A-CHAIN (protein) HIV-1 RT, B-CHAIN (protein)

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1JLF \| pdb_00001jlf	Download File View File

CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE

Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.

(2001) J Mol Biology 312: 795-805

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT A-chain (protein) HIV-1 RT B-chain (protein)
Unique Ligands	NVP

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1JLG \| pdb_00001jlg	Download File View File

CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH UC-781

Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.

(2001) J Mol Biology 312: 795-805

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT A-chain (protein) HIV-1 RT B-chain (protein)
Unique Ligands	UC1

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1JLQ \| pdb_00001jlq	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH 739W94

Ren, J., Stuart, D.I., Stammers, D.K.

(2001) J Med Chem 44: 1866-1882

Released	2001-08-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 RT, A-CHAIN (protein) HIV-1 RT, B-CHAIN (protein)
Unique Ligands	SBN

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1LW0 \| pdb_00001lw0	Download File View File

CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE

Ren, J., Chamberlain, P.P., Nichols, C.E., Douglas, L., Stuart, D.I., Stammers, D.K.

(2002) J Virol 76: 10015-10019

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (protein)
Unique Ligands	NVP, PO4

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1LW2 \| pdb_00001lw2	Download File View File

CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH 1051U91

Ren, J., Chamberlain, P.P., Nichols, C.E., Douglas, L., Stuart, D.I., Stammers, D.K.

(2002) J Virol 76: 10015-10019

Released	2002-10-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (protein)
Unique Ligands	PO4, U05

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1LWC \| pdb_00001lwc	Download File View File

CRYSTAL STRUCTURE OF M184V MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE

Ren, J., Chamberlain, P.P., Nichols, C.E., Douglas, L., Stuart, D.I., Stammers, D.K.

(2002) J Virol 76: 10015-10019

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (protein)
Unique Ligands	NVP, PO4

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1LWE \| pdb_00001lwe	Download File View File

CRYSTAL STRUCTURE OF M41L/T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE (RTMN) IN COMPLEX WITH NEVIRAPINE

Ren, J., Chamberlain, P.P., Nichols, C.E., Douglas, L., Stuart, D.I., Stammers, D.K.

(2002) J Virol 76: 10015-10019

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (protein)
Unique Ligands	NVP, PO4

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1LWF \| pdb_00001lwf	Download File View File

CRYSTAL STRUCTURE OF A MUTANT HIV-1 REVERSE TRANSCRIPTASE (RTMQ+M184V: M41L/D67N/K70R/M184V/T215Y) IN COMPLEX WITH NEVIRAPINE

Ren, J., Chamberlain, P.P., Nichols, C.E., Douglas, L., Stuart, D.I., Stammers, D.K.

(2002) J Virol 76: 10015-10019

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (protein)
Unique Ligands	NVP

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1QS4 \| pdb_00001qs4	Download File View File

Core domain of HIV-1 integrase complexed with Mg++ and 1-(5-chloroindol-3-yl)-3-hydroxy-3-(2H-tetrazol-5-yl)-propenone

Goldgur, Y., Craigie, R., Fujiwara, T., Yoshinaga, T., Davies, D.R.

(1999) Proc Natl Acad Sci U S A 96: 13040-13043

Released	1999-11-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49)) (protein)
Unique Ligands	100, MG

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1R77 \| pdb_00001r77	Download File View File

Crystal structure of the cell wall targeting domain of peptidylglycan hydrolase ALE-1

Lu, J.Z., Fujiwara, T., Komatsuzawa, H., Sugai, M., Sakon, J.

(2006) J Biological Chem 281: 549-558

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Staphylococcus capitis
Macromolecule	Cell Wall Targeting Domain of Glycylglycine Endopeptidase ALE-1 (protein)

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1S1T \| pdb_00001s1t	Download File View File

Crystal structure of L100I mutant HIV-1 reverse transcriptase in complex with UC-781

Ren, J., Nichols, C.E., Chamberlain, P.P., Stammers, D.K.

(2004) J Mol Biology 336: 569-578

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Reverse transcriptase (protein)
Unique Ligands	PO4, UC1