RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Gao, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 262 Structures.

Refinements

Structure Determination Methodology

experimental (262)

Scientific Name of Source Organism

	Homo sapiens (97)
	Mus musculus (11)
	synthetic construct (11)
	unidentified (7)
	Escherichia coli (6)
	Spinacia oleracea (6)
	Thermoanaerobacterium saccharolyticum JW/SL-YS485 (6)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Streptomyces sp. CNH189 (5)
	Arabidopsis thaliana (4)

More...

Taxonomy

	Eukaryota (148)
	Bacteria (93)
	Riboviria (18)
	other sequences (11)
	unclassified sequences (7)
	Archaea (4)

Experimental Method

	X-RAY DIFFRACTION (222)
	ELECTRON MICROSCOPY (32)
	SOLUTION NMR (8)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (258)
	DNA (6)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (33)
	1.5 - 2.0 (82)
	2.0 - 2.5 (72)
	2.5 - 3.0 (37)
	3.0 - 3.5 (18)
	3.5 - 4.0 (10)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (7)
	2005 - 2009 (10)
	2010 - 2014 (26)
	2015 - 2019 (101)
	2020 - 2024 (109)
	2025 - 2029 (8)

Enzyme Classification Name

	Hydrolases (50)
	Transferases (38)
	Oxidoreductases (17)
	Lyases (7)
	Ligases (6)
	Isomerases (4)

Membrane Protein Annotation

	PDBTM (14)
	MemProtMD (6)
	OPM (2)
	mpstruc (1)

Symmetry Type

	Asymmetric (162)
	Cyclic (92)
	Dihedral (6)
	Helical (1)

SCOP Classification

	All beta proteins (35)
	Alpha and beta proteins (a/b) (24)
	Artifacts (19)
	Alpha and beta proteins (a+b) (19)
	All alpha proteins (5)
	Coiled coil proteins (2)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 262 Structures

Page 1 of 11

Sort by

Explore in 3D

1BO9 \| pdb_00001bo9	Download File View File

NMR SOLUTION STRUCTURE OF DOMAIN 1 OF HUMAN ANNEXIN I

Gao, J., Yan Li, H.

(1999) J Biological Chem 274: 2971-2977

Released	1998-08-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (ANNEXIN I) (protein)

Explore in 3D

1DV7 \| pdb_00001dv7	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)

Explore in 3D

1DVJ \| pdb_00001dvj	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 6-AZAUMP

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

Explore in 3D

1EQ0 \| pdb_00001eq0	Download File View File

SOLUTION STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH MGAMPPCP

Shi, G., Yan, H.

(2001) J Biological Chem 276: 40274-40281

Released	2001-11-07
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)

Explore in 3D

1EQM \| pdb_00001eqm	Download File View File

CRYSTAL STRUCTURE OF BINARY COMPLEX OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE WITH ADENOSINE-5'-DIPHOSPHATE

Xiao, B., Blaszczyk, J., Ji, X.

(2001) J Biological Chem 276: 40274-40281

Released	2001-04-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)
Unique Ligands	ADP, MG, PO4

Explore in 3D

1KBR \| pdb_00001kbr	Download File View File

CRYSTAL STRUCTURE OF UNLIGATED HPPK(R92A) FROM E.COLI AT 1.55 ANGSTROM RESOLUTION

Blaszczyk, J., Ji, X.

(2003) Biochemistry 42: 1573-1580

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)
Unique Ligands	CL

Explore in 3D

1OS5 \| pdb_00001os5	Download File View File

Crystal structure of HCV NS5B RNA polymerase complexed with a novel non-competitive inhibitor.

Love, R.A., Parge, H.E., Yu, X., Hickey, M.J., Diehl, W., Gao, J., Wriggers, H., Ekker, A., Wang, L., Thomson, J.A., Dragovich, P.S., Fuhrman, S.A.

(2003) J Virol 77: 7575-7581

Released	2004-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	Hepatitis C virus NS5B RNA polymerase (protein)
Unique Ligands	NH1

Explore in 3D

1Q5X \| pdb_00001q5x	Download File View File

Structure of OF RRAA (MENG), a protein inhibitor of RNA processing

Monzingo, A.F., Gao, J., Qiu, J., Georgiou, G., Robertus, J.D.

(2003) J Mol Biology 332: 1015-1024

Released	2003-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	REGULATOR OF RNASE E ACTIVITY A (protein)

Explore in 3D

1Z9M \| pdb_00001z9m	Download File View File

Crystal Structure of Nectin-like molecule-1 protein Domain 1

Dong, X., Xu, F., Gong, Y., Gao, J., Lin, P., Chen, T., Peng, Y., Qiang, B., Yuan, J., Peng, X., Rao, Z.

(2006) J Biological Chem 281: 10610-10617

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	GAPA225 (protein)

Explore in 3D

2ESW \| pdb_00002esw	Download File View File

Atomic structure of the N-terminal SH3 domain of mouse beta PIX,p21-activated kinase (PAK)-interacting exchange factor

Rao, Z.

(2006) Biochem Biophys Res Commun 339: 407-414

Released	2006-04-11
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Mus musculus
Macromolecule	Rho guanine nucleotide exchange factor 7 (protein)
Unique Ligands	CL, HG

Explore in 3D

2GHQ \| pdb_00002ghq	Download File View File

CTD-specific phosphatase Scp1 in complex with peptide C-terminal domain of RNA polymerase II

Zhang, Y., Noel, J.P.

(2006) Mol Cell 24: 759-770

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (protein) DNA-directed RNA polymerase II largest subunit (protein)
Unique Ligands	MG

Explore in 3D

2GHT \| pdb_00002ght	Download File View File

CTD-specific phosphatase Scp1 in complex with peptide from C-terminal domain of RNA polymerase II

Zhang, Y., Noel, J.P.

(2006) Mol Cell 24: 759-770

Released	2006-12-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (protein) DNA-directed RNA polymerase II largest subunit (protein)
Unique Ligands	MG

Explore in 3D

2GNC \| pdb_00002gnc	Download File View File

Crystal structure of srGAP1 SH3 domain in the slit-robo signaling pathway

Li, X., Liu, Y., Gao, F., Bartlam, M., Wu, J.Y., Rao, Z.

(2006) J Biological Chem 281: 28430-28437

Released	2006-07-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	SLIT-ROBO Rho GTPase-activating protein 1 (protein)

Explore in 3D

2ICZ \| pdb_00002icz	Download File View File

NMR Structures of the Expanded DNA 10bp xTGxTAxCxGCxAxGT:xACTxGCGxTAxCA

Lynch, S.R.

(2006) J Am Chem Soc 128: 14704-14711

Released	2006-11-21
Method	SOLUTION NMR
Macromolecule	5'-D((XAE)PCPTP(XGA)PCPGP(XTY)PAP(XCS)PA)-3' (nucleic acid) 5'-D((XTY)PGP(XTY)PAP(XCS)P(XGA)PCP(XAE)P(XGA)PT)-3' (nucleic acid)

Explore in 3D

2IS9 \| pdb_00002is9	Download File View File

Structure of yeast DCN-1

Yang, X., Zhou, J., Sun, L., Wei, Z., Gao, J., Gong, W., Xu, R.M., Rao, Z., Liu, Y.

(2007) J Biological Chem 282: 24490-24494

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Defective in cullin neddylation protein 1 (protein)
Unique Ligands	CL, MES, PT

Explore in 3D

2KB7 \| pdb_00002kb7	Download File View File

Hybrid solution and solid-state NMR structure of monomeric phospholamban in lipid bilayers

Traaseth, N.J., Shi, L., Verardi, R., Veglia, G.

(2009) Proc Natl Acad Sci U S A 106: 10165-10170

Released	2009-06-16
Method	SOLUTION NMR SOLID-STATE NMR
Organisms	Escherichia coli
Macromolecule	Phospholamban (protein)

Explore in 3D

3FCJ \| pdb_00003fcj	Download File View File

Nitroalkane oxidase: mutant402N crystallized with nitroethane

Major, D.T., Gao, J., Heroux, A., Orville, A.M., Valley, M.P., Fitzpatrick, P.F.

(2009) Proc Natl Acad Sci U S A 106: 20734-20739

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Fusarium oxysporum
Macromolecule	Nitroalkane oxidase (protein)
Unique Ligands	FAD, GOL, NIE

Explore in 3D

3HD1 \| pdb_00003hd1	Download File View File

Crystal structure of E. coli HPPK(N10A) in complex with MgAMPCPP

Blaszczyk, J., Li, Y., Yan, H., Ji, X.

To be published

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	ACT, APC, CL, MG

Explore in 3D

3HD2 \| pdb_00003hd2	Download File View File

Crystal structure of E. coli HPPK(Q50A) in complex with MgAMPCPP and pterin

Blaszczyk, J., Li, Y., Yan, H., Ji, X.

To be published

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	ACT, APC, CL, MG, PE0

Explore in 3D

3HT0 \| pdb_00003ht0	Download File View File

Crystal structure of E. coli HPPK(F123A) in complex with MgAMPCPP

Blaszczyk, J., Li, Y., Yan, H., Ji, X.

To be published

Released	2010-06-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli K-12
Macromolecule	HPPK (protein)
Unique Ligands	APC, CL, MG

Explore in 3D

3IMX \| pdb_00003imx	Download File View File

Crystal Structure of human glucokinase in complex with a synthetic activator

Stams, T., Vash, B.

(2009) J Med Chem 52: 6142-6152

Released	2009-10-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Glucokinase (protein)
Unique Ligands	B84, GLC, NA

Explore in 3D

3MFQ \| pdb_00003mfq	Download File View File

A Glance into the Metal Binding Specificity of TroA: Where Elaborate Behaviors Occur in the Active Center

Gao, G.F., Zheng, B., Zhang, Q., Gao, J., Han, H., Li, M.

(2011) PLoS One 6: e19510-e19510

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.598 Å
Organisms	Streptococcus suis 05ZYH33
Macromolecule	High-affinity zinc uptake system protein znuA (protein)
Unique Ligands	ZN

Explore in 3D

3T34 \| pdb_00003t34	Download File View File

Arabidopsis thaliana dynamin-related protein 1A (AtDRP1A) in prefission state

Yan, L.M., Ma, Y.Y., Sun, Y.N., Lou, Z.Y.

(2011) J Mol Cell Biol 3: 378-381

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.405 Å
Organisms	Arabidopsis thaliana
Macromolecule	Dynamin-related protein 1A, LINKER, Dynamin-related protein 1A (protein)
Unique Ligands	ALF, GDP, MG, NA

Explore in 3D

3T35 \| pdb_00003t35	Download File View File

Arabidopsis thaliana dynamin-related protein 1A in postfission state

Yan, L.M., Ma, Y.Y., Sun, Y.N., Lou, Z.Y.

(2011) J Mol Cell Biol 3: 378-381

Released	2012-06-06
Method	X-RAY DIFFRACTION 3.592 Å
Organisms	Arabidopsis thaliana
Macromolecule	Dynamin-related protein 1A, LINKER, Dynamin-related protein 1A (protein)
Unique Ligands	GDP

Explore in 3D

3W24 \| pdb_00003w24	Download File View File

The high-resolution crystal structure of TsXylA, intracellular xylanase from Thermoanaerobacterium saccharolyticum JW/SL-YS485

Han, X., Gao, J., Shang, N., Huang, C.-H., Ko, T.-P., Zhu, Z., Wiegel, J., Shao, W., Guo, R.-T.

(2013) Proteins 81: 1256-1265

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Thermoanaerobacterium saccharolyticum JW/SL-YS485
Macromolecule	Glycoside hydrolase family 10 (protein)

1 to 25 of 262 Structures

Page 1 of 11

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BO9 | pdb_00001bo9

1DV7 | pdb_00001dv7

1DVJ | pdb_00001dvj

1EQ0 | pdb_00001eq0

1EQM | pdb_00001eqm

1KBR | pdb_00001kbr

1OS5 | pdb_00001os5

1Q5X | pdb_00001q5x

1Z9M | pdb_00001z9m

2ESW | pdb_00002esw

2GHQ | pdb_00002ghq

2GHT | pdb_00002ght

2GNC | pdb_00002gnc

2ICZ | pdb_00002icz

2IS9 | pdb_00002is9

2KB7 | pdb_00002kb7

3FCJ | pdb_00003fcj

3HD1 | pdb_00003hd1

3HD2 | pdb_00003hd2

3HT0 | pdb_00003ht0

3IMX | pdb_00003imx

3MFQ | pdb_00003mfq

3T34 | pdb_00003t34

3T35 | pdb_00003t35

3W24 | pdb_00003w24