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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hensel, R."

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Search Summary

This query matches 178 Structures.

Refinements

Structure Determination Methodology

experimental (178)

Scientific Name of Source Organism

	Homo sapiens (41)
	Escherichia coli (16)
	Halobacterium salinarum NRC-1 (14)
	Gallus gallus (12)
	synthetic construct (11)
	Geobacillus thermodenitrificans NG80-2 (9)
	Fusarium oxysporum (8)
	Mus musculus (8)
	Tequatrovirus T4 (8)
	Alcaligenes faecalis (7)

More...

Taxonomy

	Eukaryota (103)
	Bacteria (61)
	Archaea (21)
	other sequences (11)
	Duplodnaviria (8)
	Riboviria (4)

Experimental Method

	X-RAY DIFFRACTION (143)
	ELECTRON MICROSCOPY (34)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (178)
	DNA (12)
	RNA (9)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (18)
	1.5 - 2.0 (44)
	2.0 - 2.5 (53)
	2.5 - 3.0 (32)
	3.0 - 3.5 (22)
	3.5 - 4.0 (2)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	2015 - 2019 (116)
	2020 - 2024 (62)

Enzyme Classification Name

	Oxidoreductases (37)
	Hydrolases (34)
	Isomerases (14)
	Transferases (10)
	Translocases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (63)
	mpstruc (57)
	MemProtMD (52)
	OPM (17)

Symmetry Type

	Asymmetric (100)
	Cyclic (65)
	Dihedral (7)
	Octahedral (6)

SCOP Classification

	Membrane and cell surface proteins and peptides (24)
	All beta proteins (27)
	All alpha proteins (18)
	Alpha and beta proteins (a+b) (12)
	Artifacts (6)
	Alpha and beta proteins (a/b) (5)

AllSelected

1 to 25 of 178 Structures

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4X8Y \| pdb_00004x8y	Download File View File

Crystal structure of human PGRMC1 cytochrome b5-like domain

Nakane, T., Yamamoto, T., Shimamura, T., Kobayashi, T., Kabe, Y., Suematsu, M.

(2016) Nat Commun 7: 11030-11030

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Membrane-associated progesterone receptor component 1 (protein)
Unique Ligands	HEM

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4YM8 \| pdb_00004ym8	Download File View File

Crystal structure of hen egg-white lysozyme

Sugahara, M., Nakane, T., Suzuki, M., Nango, E.

To be published

Released	2015-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4YOP \| pdb_00004yop	Download File View File

CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME

Sugahara, M., Nakane, T., Suzuki, M., Nango, E.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2519-2525

Released	2015-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA

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4YSA \| pdb_00004ysa	Download File View File

Completely oxidized structure of copper nitrite reductase from Geobacillus thermodenitrificans

Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, NA

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4YSC \| pdb_00004ysc	Download File View File

Completely oxidized structure of copper nitrite reductase from Alcaligenes faecalis

(2016) Proc Natl Acad Sci U S A 113: 2928-2933

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Alcaligenes faecalis
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CL, CU

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4YSD \| pdb_00004ysd	Download File View File

Room temperature structure of copper nitrite reductase from Geobacillus thermodenitrificans

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	ACY, CU

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4YSE \| pdb_00004yse	Download File View File

High resolution synchrotron structure of copper nitrite reductase from Alcaligenes faecalis

(2016) Proc Natl Acad Sci U S A 113: 2928-2933

Released	2016-03-09
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Alcaligenes faecalis
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	ACY, CU, MPD

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4YSO \| pdb_00004yso	Download File View File

Copper nitrite reductase from Geobacillus thermodenitrificans - 0.064 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSP \| pdb_00004ysp	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.32 MGy

Fukuda, Y., Tse, K.M., Suzuki, M., Diedrichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSQ \| pdb_00004ysq	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.38 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSR \| pdb_00004ysr	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.6 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSS \| pdb_00004yss	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.7 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YST \| pdb_00004yst	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 24.9 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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4YSU \| pdb_00004ysu	Download File View File

Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 25.0 MGy

(2016) J Biochem 159: 527-538

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, MPD, SO4

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5AXS \| pdb_00005axs	Download File View File

Crystal structure of CdCat-Fn

Abe, S., Nakajima, H., Kondo, M., Nakane, T., Nakao, T., Ueno, T., Watanabe, Y.

(2015) Chem Commun (Camb) 51: 16609-16612

Released	2015-11-18
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	4LF, CD, GOL, SO4

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5B2O \| pdb_00005b2o	Download File View File

Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGG PAM)

Hirano, H., Nishimasu, H., Nakane, T., Ishitani, R., Nureki, O.

(2016) Cell 164: 950-961

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Francisella tularensis subsp. novicida Francisella tularensis subsp. novicida U112 synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9 (protein) DNA (5'-D(TPGPGPTPAPTPCPGP*G)-3') (nucleic acid) Guide RNA (nucleic acid) Target DNA (nucleic acid)
Unique Ligands	ACT, CA, CL, EDO, NA, ZN

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5B2P \| pdb_00005b2p	Download File View File

Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGA PAM)

Hirano, H., Nishimasu, H., Nakane, T., Ishitani, R., Nureki, O.

(2016) Cell 164: 950-961

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Francisella tularensis subsp. novicida Francisella tularensis subsp. novicida U112 synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9 (protein) DNA (5'-D(TPGPAPTPAPTPCPGP*G)-3') (nucleic acid) Target DNA (nucleic acid) Guide RNA (hybrid)
Unique Ligands	ACT, CA, CL, EDO, NA, ZN

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5B2Q \| pdb_00005b2q	Download File View File

Crystal structure of Francisella novicida Cas9 RHA in complex with sgRNA and target DNA (TGG PAM)

Hirano, H., Nishimasu, H., Nakane, T., Ishitani, R., Nureki, O.

(2016) Cell 164: 950-961

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Francisella tularensis subsp. novicida Francisella tularensis subsp. novicida U112 synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9 (protein) DNA (5'-D(TPGPGPTPAPTPCPGP*G)-3') (nucleic acid) Guide RNA (nucleic acid) Target DNA (nucleic acid)
Unique Ligands	ACT, CA, CL, EDO, NA, ZN

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5B34 \| pdb_00005b34	Download File View File

Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles in Complex with Iodine-labeled Detergent HAD13a Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA

Mizohata, E., Nakane, T.

(2016) Proc Natl Acad Sci U S A 113: 13039-13044

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	4QL, D10, D12, DD9, HP6, OCT, R16, RET

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5B35 \| pdb_00005b35	Download File View File

Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA

Mizohata, E., Nakane, T., Suzuki, M.

(2016) Proc Natl Acad Sci U S A 113: 13039-13044

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	4QM, D10, D12, DD9, HP6, OCT, R16, RET

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5B43 \| pdb_00005b43	Download File View File

Crystal structure of Acidaminococcus sp. Cpf1 in complex with crRNA and target DNA

Yamano, T., Nishimasu, H., Hirano, H., Nakane, T., Ishitani, R., Nureki, O.

(2016) Cell 165: 949-962

Released	2016-05-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Acidaminococcus Acidaminococcus sp. BV3L6
Macromolecule	CRISPR-associated endonuclease Cpf1 (protein) DNA (34-MER) (nucleic acid) DNA (5'-D(CPAPGPTPCPCPTPTPTPA)-3') (nucleic acid) RNA (43-MER) (nucleic acid)
Unique Ligands	EDO, NA

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5B6V \| pdb_00005b6v	Download File View File

A three dimensional movie of structural changes in bacteriorhodopsin: resting state structure

Nango, E., Royant, A., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.

(2016) Science 354: 1552-1557

Released	2016-12-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	C14, D10, DD9, HP6, L2P, MYS, OCT, RET, TRD, UND

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5B6W \| pdb_00005b6w	Download File View File

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 16 ns after photoexcitation

Royant, A., Nango, E., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.

(2016) Science 354: 1552-1557

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	C14, D10, DD9, HP6, L2P, MYS, OCT, RET, TRD, UND

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5B6X \| pdb_00005b6x	Download File View File

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 760 ns after photoexcitation

Royant, A., Nango, E., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.

(2016) Science 354: 1552-1557

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	C14, D10, DD9, HP6, L2P, MYS, OCT, RET, TRD, UND

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5B6Y \| pdb_00005b6y	Download File View File

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 36.2 us after photoexcitation

Royant, A., Nango, E., Nakane, T., Tanaka, T., Arima, T., Neutze, R., Iwata, S.

(2016) Science 354: 1552-1557

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	C14, D10, DD9, HP6, L2P, MYS, OCT, RET, TRD, UND

1 to 25 of 178 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4X8Y | pdb_00004x8y

4YM8 | pdb_00004ym8

4YOP | pdb_00004yop

4YSA | pdb_00004ysa

4YSC | pdb_00004ysc

4YSD | pdb_00004ysd

4YSE | pdb_00004yse

4YSO | pdb_00004yso

4YSP | pdb_00004ysp

4YSQ | pdb_00004ysq

4YSR | pdb_00004ysr

4YSS | pdb_00004yss

4YST | pdb_00004yst

4YSU | pdb_00004ysu

5AXS | pdb_00005axs

5B2O | pdb_00005b2o

5B2P | pdb_00005b2p

5B2Q | pdb_00005b2q

5B34 | pdb_00005b34

5B35 | pdb_00005b35

5B43 | pdb_00005b43

5B6V | pdb_00005b6v

5B6W | pdb_00005b6w

5B6X | pdb_00005b6x

5B6Y | pdb_00005b6y