RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Kamerlin, S.C.L."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 84 Structures.

Refinements

Structure Determination Methodology

experimental (84)

Scientific Name of Source Organism

	synthetic construct (31)
	Homo sapiens (16)
	Saccharococcus caldoxylosilyticus (7)
	unidentified (7)
	Pseudomonas aeruginosa (6)
	Saccharomyces cerevisiae (6)
	Saccharomyces cerevisiae S288C (3)
	Aspergillus niger (2)
	Medicago sativa (2)
	Mycobacterium tuberculosis (2)

More...

Taxonomy

	Eukaryota (31)
	other sequences (31)
	Bacteria (24)
	unclassified sequences (7)

Experimental Method

X-RAY DIFFRACTION (84)

Polymer Entity Type

	Protein (84)
	DNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (35)
	2.0 - 2.5 (27)
	2.5 - 3.0 (15)

Release Date

	2015 - 2019 (48)
	2020 - 2024 (34)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (37)
	Transferases (11)
	Oxidoreductases (6)
	Isomerases (2)
	Lyases (2)

Symmetry Type

	Asymmetric (66)
	Cyclic (16)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (4)
	All beta proteins (3)

AllSelected

1 to 25 of 84 Structures

Page 1 of 4

Sort by

Explore in 3D

4CXK \| pdb_00004cxk	Download File View File

G9 mutant of PAS, arylsulfatase from Pseudomonas Aeruginosa

Miton, C.M., Jonas, S., Mohammed, M.F., Fischer, G., Loo, B.v., Kintses, B., Hyvonen, M., Tokuriki, N., Hollfelder, F.

(2018) Proc Natl Acad Sci U S A 115: E7293-E7302

Released	2015-04-22
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	ARYLSULFATASE (protein)
Unique Ligands	CA, PEG, SO4

Explore in 3D

4CXS \| pdb_00004cxs	Download File View File

G4 mutant of PAS, arylsulfatase from Pseudomonas aeruginosa, in complex with Phenylphosphonic acid

Miton, C.M., Jonas, S., Mohammed, M.F., Fischer, G., Loo, B.v., Kintses, B., Hyvonen, M., Tokuriki, N., Hollfelder, F.

(2018) Proc Natl Acad Sci U S A 115: E7293-E7302

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	ARYLSULFATASE (protein)
Unique Ligands	CA, SO4, SV7

Explore in 3D

4CXU \| pdb_00004cxu	Download File View File

G4 mutant of PAS, arylsulfatase from Pseudomonas Aeruginosa, in complex with 3-Br-Phenolphenylphosphonate

Miton, C.M., Jonas, S., Mohammed, M.F., Fischer, G., Loo, B.v., Kintses, B., Hyvonen, M., Tokuriki, N., Hollfelder, F.

(2018) Proc Natl Acad Sci U S A 115: E7293-E7302

Released	2015-04-22
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	ARYLSULFATASE (protein)
Unique Ligands	62Y, CA

Explore in 3D

4CYR \| pdb_00004cyr	Download File View File

G4 mutant of PAS, arylsulfatase from Pseudomonas Aeruginosa

Miton, C.M., Jonas, S., Mohammed, M.F., Fischer, G., Loo, B.v., Kintses, B., Hyvonen, M., Tokuriki, N., Hollfelder, F.

(2018) Proc Natl Acad Sci U S A 115: E7293-E7302

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	ARYLSULFATASE (protein)
Unique Ligands	CA, PEG, SO4

Explore in 3D

4CYS \| pdb_00004cys	Download File View File

G6 mutant of PAS, arylsulfatase from Pseudomonas Aeruginosa, in complex with Phenylphosphonic acid

Miton, C.M., Jonas, S., Mohammed, M.F., Fischer, G., Loo, B.v., Kintses, B., Hyvonen, M., Tokuriki, N., Hollfelder, F.

(2018) Proc Natl Acad Sci U S A 115: E7293-E7302

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	ARYLSULFATASE (protein)
Unique Ligands	CA, NH4, PEG, SV7

Explore in 3D

4UFN \| pdb_00004ufn	Download File View File

Laboratory evolved variant R-C1B1 of potato epoxide hydrolase StEH1

Carlsson, A.J., Bauer, P., Nilsson, M., Dobritzsch, D., Kamerlin, S.C.L., Widersten, M.

(2016) Org Biomol Chem 14: 5639

Released	2016-04-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Solanum tuberosum
Macromolecule	EPOXIDE HYDROLASE (protein)
Unique Ligands	DIO

Explore in 3D

4UHU \| pdb_00004uhu	Download File View File

W229D mutant of the last common ancestor of Gram-negative bacteria (GNCA) beta-lactamase class A

Gavira, J.A., Risso, V.A., Martinez-Rodriguez, S., Sanchez-Ruiz, J.M.

(2017) Nat Commun 8: 16113-16113

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.305 Å
Organisms	synthetic construct
Macromolecule	GNCA LACTAMASE W229D (protein)
Unique Ligands	ACT, FMT

Explore in 3D

5AJ9 \| pdb_00005aj9	Download File View File

G7 mutant of PAS, arylsulfatase from Pseudomonas Aeruginosa

Miton, C.M., Fischer, G., Jonas, S., Mohammed, M.F., Loo, B.v., Kintses, B., Hyvonen, M., Tokuriki, N., Hollfelder, F.

(2018) Proc Natl Acad Sci U S A 115: E7293-E7302

Released	2016-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	ARYLSULFATASE (protein)
Unique Ligands	CA, CL, MES, SO4

Explore in 3D

5FQI \| pdb_00005fqi	Download File View File

W229D and F290W mutant of the last common ancestor of Gram-negative bacteria (GNCA4) beta-lactamase class A

Gavira, J.A., Risso, V.A., Martinez-Rodriguez, S., Sanchez-Ruiz, J.M.

(2017) Nat Commun 8: 16113-16113

Released	2016-12-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	synthetic construct
Macromolecule	GNCA4 LACTAMASE W229D AND F290W (protein)
Unique Ligands	EDO, GOL, PEG, PG0, PG4, PGE

Explore in 3D

5FQJ \| pdb_00005fqj	Download File View File

W229D mutant of the last common ancestor of Gram-negative bacteria (GNCA) beta-lactamase bound to 5(6)-nitrobenzotriazole (TS-analog)

Gavira, J.A., Martinez-Rodriguez, S., Risso, V.A., Sanchez-Ruiz, J.M.

(2017) Nat Commun 8: 16113-16113

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.271 Å
Organisms	synthetic construct
Macromolecule	GNCA LACTAMASE W229D (protein)
Unique Ligands	6NT

Explore in 3D

5FQK \| pdb_00005fqk	Download File View File

W229D and F290W mutant of the last common ancestor of Gram-negative bacteria (GNCA4) beta-lactamase class A bound to 5(6)-nitrobenzotriazole (TS-analog)

Gavira, J.A., Risso, V.A., Martinez-Rodriguez, S., Sanchez-Ruiz, J.M.

(2017) Nat Commun 8: 16113-16113

Released	2016-12-21
Method	X-RAY DIFFRACTION 1.767 Å
Organisms	synthetic construct
Macromolecule	GNCA4 LACTAMASE W229D AND F290W (protein)
Unique Ligands	6NT

Explore in 3D

5FQM \| pdb_00005fqm	Download File View File

Last common ancestor of Gram Negative Bacteria (GNCA) Class A beta- lactamase

Martinez Rodriguez, S., Gavira, J.A., Risso, V.A., Sanchez Ruiz, J.M.

(2017) Nat Commun 8: 16113-16113

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	synthetic construct
Macromolecule	GNCA BETA LACTAMASE (protein)
Unique Ligands	GOL, SO4

Explore in 3D

5FQQ \| pdb_00005fqq	Download File View File

Last common ancestor of Gram-negative bacteria (GNCA4) beta-lactamase class A

Gavira, J.A., Martinez-Rodriguez, S., Risso, V.A., Sanchez-Ruiz, J.M.

(2017) Nat Commun 8: 16113-16113

Released	2016-12-28
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	synthetic construct
Macromolecule	GNCA4 LACTAMASE (protein)
Unique Ligands	PEG, PG0

Explore in 3D

5NIT \| pdb_00005nit	Download File View File

Glucose oxidase mutant A2

Hoffmann, K.

(2017) ACS Catal 7: 6188-6197

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Aspergillus niger
Macromolecule	Glucose oxidase (protein)
Unique Ligands	DIO, EPE, FAD, NAG, OXY
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5NIW \| pdb_00005niw	Download File View File

Glucose oxydase mutant A2

Hoffmann, K., Frank, D.

(2017) ACS Catal 7: 6188-6197

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aspergillus niger
Macromolecule	Glucose oxidase (protein)
Unique Ligands	DIO, FAD, NAG, OXY, P4C, PEG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

5OD3 \| pdb_00005od3	Download File View File

Crystal structure of R. ruber ADH-A, mutant Y54G, L119Y

Dobritzsch, D., Maurer, D., Hamnevik, E., Enugala, T.R., Widersten, M.

(2018) ACS Catal 8:

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Rhodococcus sp. M8
Macromolecule	Alcohol dehydrogenase (protein)
Unique Ligands	NAD, ZN

Explore in 3D

5WKR \| pdb_00005wkr	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference complexed with naringenin (ancCC)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	unidentified
Macromolecule	Engineered Chalcone Isomerase ancCC (protein)
Unique Ligands	CL, MPD, NAR

Explore in 3D

5WKS \| pdb_00005wks	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference complexed with naringenin (ancR1)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	unidentified
Macromolecule	Engineered Chalcone Isomerase ancR1 (protein)
Unique Ligands	FMT, MPD, NAR

Explore in 3D

5WL3 \| pdb_00005wl3	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference (ancR2)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	unidentified
Macromolecule	Engineered Chalcone Isomerase ancR2 (protein)
Unique Ligands	CL

Explore in 3D

5WL4 \| pdb_00005wl4	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference (ancR3)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	unidentified
Macromolecule	Engineered Chalcone Isomerase ancR3 (protein)
Unique Ligands	FMT

Explore in 3D

5WL5 \| pdb_00005wl5	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference (ancR5)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.513 Å
Organisms	unidentified
Macromolecule	Engineered Chalcone Isomerase ancR5 (protein)
Unique Ligands	CL, SO4

Explore in 3D

5WL6 \| pdb_00005wl6	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference (AncR7)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	unidentified
Macromolecule	Engineered Chalcone Isomerase AncR7 (protein)
Unique Ligands	CL

Explore in 3D

5WL7 \| pdb_00005wl7	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference (ancCHI*)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	unidentified
Macromolecule	Engineered Chalcone Isomerase ancCHI* (protein)
Unique Ligands	CL

Explore in 3D

5WL8 \| pdb_00005wl8	Download File View File

Crystal structure of chalcone isomerase engineered from ancestral inference (epR4)

Burke, J.R., Kaltenbach, M., Tawfik, D.S., Noel, J.P.

(2018) Nat Chem Biol 14: 548-555

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	synthetic construct
Macromolecule	Engineered Chalcone Isomerase epR4 (protein)
Unique Ligands	FMT

Explore in 3D

6C2C \| pdb_00006c2c	Download File View File

The molecular basis for the functional evolution of an organophosphate hydrolysing enzyme

Hong, N.-S., Jackson, C.J., Carr, P.D., Tokuriki, N., Baier, F., Yang, G.

(2019) Nat Chem Biol 15: 1120-1128

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.597 Å
Organisms	Pseudomonas sp.
Macromolecule	dihydrocoumarin hydrolase, AncDHCH1 (protein)
Unique Ligands	MG, PEG, ZN

1 to 25 of 84 Structures

Page 1 of 4

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4CXK | pdb_00004cxk

4CXS | pdb_00004cxs

4CXU | pdb_00004cxu

4CYR | pdb_00004cyr

4CYS | pdb_00004cys

4UFN | pdb_00004ufn

4UHU | pdb_00004uhu

5AJ9 | pdb_00005aj9

5FQI | pdb_00005fqi

5FQJ | pdb_00005fqj

5FQK | pdb_00005fqk

5FQM | pdb_00005fqm

5FQQ | pdb_00005fqq

5NIT | pdb_00005nit

5NIW | pdb_00005niw

5OD3 | pdb_00005od3

5WKR | pdb_00005wkr

5WKS | pdb_00005wks

5WL3 | pdb_00005wl3

5WL4 | pdb_00005wl4

5WL5 | pdb_00005wl5

5WL6 | pdb_00005wl6

5WL7 | pdb_00005wl7

5WL8 | pdb_00005wl8

6C2C | pdb_00006c2c