RCSB PDB: Search

1KGC \| pdb_00001kgc	Download File View File

Immune Receptor

Kjer-Nielsen, L., Clements, C.S., Brooks, A.G., Purcell, A.W., McCluskey, J., Rossjohn, J.

(2002) Structure 10: 1521-1532

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	T-cell receptor alpha chain (protein) T-cell receptor beta chain (protein)

Explore in 3D

1M05 \| pdb_00001m05	Download File View File

HLA B8 in complex with an Epstein Barr Virus determinant

Kjer-Nielsen, L., Clements, C.S., Brooks, A.G., Purcell, A.W., Fontes, M.R., McCluskey, J., Rossjohn, J.

(2003) J Immunol 169: 5153-5160

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBNA-3 nuclear protein (protein) HLA class I histocompatibility antigen, B-8 B*0801 alpha chain (protein)
Unique Ligands	CD

Explore in 3D

1M6O \| pdb_00001m6o	Download File View File

Crystal Structure of HLA B4402 in complex with HLA DPA0201 peptide

Macdonald, W.A., Purcell, A.W., Williams, D.S., Mifsud, N.A., Ely, L.K., Gorman, J.J., Clements, C.S., Kjer-Nielsen, L., Koelle, D.M., Brooks, A.G., Lovrecz, G.O., Lu, L., Rossjohn, J., McCluskey, J.

(2003) J Exp Medicine 198: 679-691

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA DPA0201 peptide (protein) HLA class I histocompatibility antigen, BW-44(B-12) B4402 alpha chain (protein)

Explore in 3D

1MI5 \| pdb_00001mi5	Download File View File

The crystal structure of LC13 TcR in complex with HLAB8-EBV peptide complex

Kjer-Nielsen, L., Clements, C.S., Purcell, A.W., Brooks, A.G., Whisstock, J.C., Burrows, S.R., McCluskey, J., Rossjohn, J.

(2003) Immunity 18: 53-64

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Epstein-Barr virus (strain GD1) Homo sapiens
Macromolecule	Epstein Barr Virus peptide (protein) MHC heavy chain (protein) TcR alpha chain (protein) TcR beta chain (protein) beta 2 microglobulin (protein)

Explore in 3D

1N2R \| pdb_00001n2r	Download File View File

A natural selected dimorphism in HLA B*44 alters self, peptide reportoire and T cell recognition.

Macdonald, W.A., Purcell, A.W., Williams, D.S., Mifsud, N., Ely, L.K., Gorman, J.J., Clements, C.S., Kjer-Nielsen, L., Koelle, D.M., Brooks, A.G., Lovrecz, G.O., Lu, L., Rossjohn, J., McCluskey, J.

(2003) J Exp Medicine 198: 679-691

Released	2004-03-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA DPA0201 PEPTIDE (protein) HLA class I histocompatibility antigen, BW-44(B-12) B4403 alpha chain (protein)
Unique Ligands	ACY

Explore in 3D

1S9W \| pdb_00001s9w	Download File View File

Crystal Structure Analysis of NY-ESO-1 epitope, SLLMWITQC, in complex with HLA-A2

Webb, A.I., Dunstone, M.A., Chen, W., Aguilar, M.I., Chen, Q., Chang, L., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Rossjohn, J., Purcell, A.W.

(2004) J Biological Chem 279: 23438-23446

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO-1 peptide (protein)
Unique Ligands	SO4

Explore in 3D

1S9X \| pdb_00001s9x	Download File View File

Crystal Structure Analysis of NY-ESO-1 epitope analogue, SLLMWITQA, in complex with HLA-A2

Webb, A.I., Dunstone, M.A., Chen, W., Aguilar, M.I., Chen, Q., Chang, L., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Rossjohn, J., Purcell, A.W.

(2004) J Biological Chem 279: 23438-23446

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO-1 peptide analogue S9A (protein)
Unique Ligands	SO4

Explore in 3D

1S9Y \| pdb_00001s9y	Download File View File

Crystal Structure Analysis of NY-ESO-1 epitope analogue, SLLMWITQS, in complex with HLA-A2

Webb, A.I., Dunstone, M.A., Chen, W., Aguilar, M.I., Chen, Q., Chang, L., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Rossjohn, J., Purcell, A.W.

(2004) J Biological Chem 279: 23438-23446

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO-1 peptide analogue S9S (protein)
Unique Ligands	SO4

Explore in 3D

1SY6 \| pdb_00001sy6	Download File View File

Crystal Structure of CD3gammaepsilon Heterodimer in Complex with OKT3 Fab Fragment

Kjer-Nielsen, L., Dunstone, M.A., Kostenko, L., Ely, L.K., Beddoe, T., Misfud, N.A., Purcell, A.W., Brooks, A.G., McCluskey, J., Rossjohn, J.

(2004) Proc Natl Acad Sci U S A 101: 7675-7680

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	OKT3 Fab heavy chain (protein) OKT3 Fab light chain (protein) T-cell surface glycoprotein CD3 gamma/epsilon chain (protein)

Explore in 3D

1SYS \| pdb_00001sys	Download File View File

Crystal structure of HLA, B*4403, and peptide EEPTVIKKY

Zernich, D., Purcell, A.W., Macdonald, W.A., Kjer-Nielsen, L., Ely, L.K., Laham, N., Crockford, T., Mifsud, N.A., Tait, B.D., Holdsworth, R., Brooks, A.G., Bottomley, S.P., Beddoe, T., Peh, C.A., Rossjohn, J., McCluskey, J.

(2004) J Exp Medicine 200: 13-24

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Sorting nexin 5 (protein) leukocyte antigen (HLA) class I molecule (protein)

Explore in 3D

1SYV \| pdb_00001syv	Download File View File

HLA-B*4405 complexed to the dominant self ligand EEFGRAYGF

Zernich, D., Purcell, A.W., Macdonald, W.A., Kjer-Nielsen, L., Ely, L.K., Laham, N., Crockford, T., Mifsud, N.A., Tait, B.D., Holdsworth, R., Brooks, A.G., Bottomley, S.P., Beddoe, T., Peh, C.A., Rossjohn, J., McCluskey, J.

(2004) J Exp Medicine 200: 13-24

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) MHC class I antigen (protein) major histocompatibility complex, class II, DR alpha (protein)

Explore in 3D

1T0M \| pdb_00001t0m	Download File View File

Conformational switch in polymorphic H-2K molecules containing an HSV peptide

Webb, A.I., Borg, N.A., Dunstone, M.A., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Carbone, F.R., Bottomley, S.P., Purcell, A.W., Rossjohn, J.

(2004) J Immunol 173: 402-409

Released	2004-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

Explore in 3D

1T0N \| pdb_00001t0n	Download File View File

Conformational switch in polymorphic H-2K molecules containing an HSV peptide

Webb, A.I., Borg, N.A., Dunstone, M.A., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Carbone, F.R., Bottomley, S.P., Purcell, A.W., Rossjohn, J.

(2004) J Immunol 173: 402-409

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

Explore in 3D

1YDP \| pdb_00001ydp	Download File View File

1.9A crystal structure of HLA-G

Clements, C.S., Kjer-nielsen, L., Kostenko, L., Hoare, H.L., Dunstone, M.A., Moses, E., Freed, K., Brooks, A.G., Rossjohn, J., Mccluskey, J.

(2005) Proc Natl Acad Sci U S A 102: 3360-3365

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) MHC class I antigen (protein) histone 2a peptide (protein)
Unique Ligands	CL, CO

Explore in 3D

1ZHK \| pdb_00001zhk	Download File View File

Crystal structure of HLA-B*3501 presenting 13-mer EBV antigen LPEPLPQGQLTAY

Tynan, F.E., Borg, N.A., Miles, J.J., Beddoe, T., El-Hassen, D., Silins, S.L., van Zuylen, W.J., Purcell, A.W., Kjer-Nielsen, L., McCluskey, J., Burrows, S.R., Rossjohn, J.

(2005) J Biological Chem 280: 23900-23909

Released	2005-05-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV-peptide LPEPLPQGQLTAY (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

Explore in 3D

1ZHL \| pdb_00001zhl	Download File View File

Crystal structure of HLA-B*3508 presenting 13-mer EBV antigen LPEPLPQGQLTAY

Tynan, F.E., Borg, N.A., Miles, J.J., Beddoe, T., El-Hassen, D., Silins, S.L., van Zuylen, W.J., Purcell, A.W., Kjer-Nielsen, L., McCluskey, J., Burrows, S.R., Rossjohn, J.

(2005) J Biological Chem 280: 23900-23909

Released	2005-05-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV-peptide LPEPLPQGQLTAY (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

Explore in 3D

1ZSD \| pdb_00001zsd	Download File View File

Crystal Structure Of HLA-B*3501 Presenting an 11-Mer EBV Antigen EPLPQGQLTAY

Miles, J.J., Elhassen, D., Borg, N.A., Silins, S.L., Tynan, F.E., Burrows, J.M., Purcell, A.W., Kjer-Nielsen, L., Rossjohn, J., Burrows, S.R., McCluskey, J.

(2005) J Immunol 175: 3826-3834

Released	2005-06-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	BZLF1 trans-activator protein (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

Explore in 3D

2AK4 \| pdb_00002ak4	Download File View File

Crystal Structure of SB27 TCR in complex with HLA-B*3508-13mer peptide

Tynan, F.E., Burrows, S.R., Buckle, A.M., Clements, C.S., Borg, N.A., Miles, J.J., Beddoe, T., Whisstock, J.C., Wilce, M.C., Silins, S.L., Burrows, J.M., Kjer-Nielsen, L., Konstenko, L., Purcell, A.W., McCluskey, J., Rossjohn, J.

(2005) Nat Immunol 6: 1114-1122

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV peptide LPEPLPQGQLTAY (protein) HLA-B35 variant (protein) SB27 T cell receptor alpha chain (protein) SB27 T cell receptor beta chain (protein)
Unique Ligands	IOD

Explore in 3D

2AXF \| pdb_00002axf	Download File View File

The Immunogenicity of a Viral Cytotoxic T Cell Epitope is controlled by its MHC-bound Conformation

Tynan, F.E., Elhassen, D., Purcell, A.W., Burrows, J.M., Borg, N.A., Miles, J.J., Williamson, N.A., Green, K.J., Tellam, J., Kjer-Nielsen, L., McCluskey, J., Rossjohn, J., Burrows, S.R.

(2005) J Exp Medicine 202: 1249-1260

Released	2005-11-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	10-mer peptide from BZLF1 trans-activator protein (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B*3508 heavy chain (protein)
Unique Ligands	ACY

Explore in 3D

2AXG \| pdb_00002axg	Download File View File

The Immunogenicity of a Viral Cytotoxic T Cell Epitope is controlled by its MHC-bound Conformation

Tynan, F.E., Elhassen, D., Purcell, A.W., Burrows, J.M., Borg, N.A., Miles, J.J., Williamson, N.A., Green, K.J., Tellam, J., Kjer-Nielsen, L., McCluskey, J., Rossjohn, J., Burrows, S.R.

(2005) J Exp Medicine 202: 1249-1260

Released	2005-11-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	10-mer peptide from BZLF1 trans-activator protein (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B*3501 heavy chain (protein)
Unique Ligands	ACY

Explore in 3D

2ESV \| pdb_00002esv	Download File View File

Structure of the HLA-E-VMAPRTLIL/KK50.4 TCR complex

Hoare, H.L., Rossjohn, J.

(2006) Nat Immunol 7: 256-264

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Human cytomegalovirus (strain AD169)
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, alpha chain E (protein) KK50.4 T cell receptor alpha chain (protein) KK50.4 T cell receptor beta chain (protein) VMAPRTLIL peptide from CMV gpUL40 (protein)
Unique Ligands	IOD

Explore in 3D

2EYR \| pdb_00002eyr	Download File View File

A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition

Kjer-Nielsen, L., Borg, N.A.

(2006) J Exp Medicine 203: 661-673

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	NKT12 (protein)

Explore in 3D

2EYS \| pdb_00002eys	Download File View File

A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition

Kjer-Nielsen, L., Borg, N.A.

(2006) J Exp Medicine 203: 661-673

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	NKT15 (protein)
Unique Ligands	ACY

Explore in 3D

2EYT \| pdb_00002eyt	Download File View File

A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition

Kjer-Nielsen, L., Borg, N.A.

(2006) J Exp Medicine 203: 661-673

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	NKT15 (protein)

Explore in 3D

2FYY \| pdb_00002fyy	Download File View File

The role of T cell receptor alpha genes in directing human MHC restriction

Miles, J.J., Borg, N.A.

(2006) J Immunol 177: 6804-6814

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	11-mer peptide from Epstein-Barr nuclear antigen 1 (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KGC | pdb_00001kgc

1M05 | pdb_00001m05

1M6O | pdb_00001m6o

1MI5 | pdb_00001mi5

1N2R | pdb_00001n2r

1S9W | pdb_00001s9w

1S9X | pdb_00001s9x

1S9Y | pdb_00001s9y

1SY6 | pdb_00001sy6

1SYS | pdb_00001sys

1SYV | pdb_00001syv

1T0M | pdb_00001t0m

1T0N | pdb_00001t0n

1YDP | pdb_00001ydp

1ZHK | pdb_00001zhk

1ZHL | pdb_00001zhl

1ZSD | pdb_00001zsd

2AK4 | pdb_00002ak4

2AXF | pdb_00002axf

2AXG | pdb_00002axg

2ESV | pdb_00002esv

2EYR | pdb_00002eyr

2EYS | pdb_00002eys

2EYT | pdb_00002eyt

2FYY | pdb_00002fyy