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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Krantz, I.D."

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Search Summary

This query matches 137 Structures.

Refinements

Structure Determination Methodology

experimental (137)

Scientific Name of Source Organism

	Homo sapiens (67)
	Trypanosoma brucei (22)
	Human alphaherpesvirus 1 strain 17 (15)
	Escherichia coli (6)
	Desulfovibrio desulfuricans (2)
	Pseudomonas sp. KKS102 (2)
	Schistosoma mansoni (2)
	Sus scrofa (2)
	Tequatrovirus T4 (2)
	Arabidopsis thaliana (1)

More...

Taxonomy

	Eukaryota (96)
	Bacteria (20)
	Duplodnaviria (18)
	Riboviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (134)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (130)
	DNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (51)
	2.0 - 2.5 (60)
	2.5 - 3.0 (15)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (9)
	2000 - 2004 (8)
	2005 - 2009 (11)
	2010 - 2014 (11)
	2015 - 2019 (52)
	2020 - 2024 (41)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (48)
	Hydrolases (51)
	Lyases (3)
	Isomerases (2)
	Oxidoreductases (1)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (9)
	mpstruc (9)
	MemProtMD (7)
	OPM (1)

Symmetry Type

	Asymmetric (92)
	Cyclic (37)
	Dihedral (1)

SCOP Classification

	All alpha proteins (47)
	Alpha and beta proteins (a+b) (28)
	Alpha and beta proteins (a/b) (18)
	Artifacts (2)
	Small proteins (1)
	All beta proteins (1)

AllSelected

1 to 25 of 137 Structures

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Explore in 3D

1D63 \| pdb_00001d63	Download File View File

CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURES

Brown, D.G., Sanderson, M.R., Garman, E., Neidle, S.

(1992) J Mol Biology 226: 481-490

Released	1993-01-15
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	BRN, MG

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1D65 \| pdb_00001d65	Download File View File

MOLECULAR STRUCTURE OF THE B-DNA DODECAMER D(CGCAAATTTGCG)2; AN EXAMINATION OF PROPELLER TWIST AND MINOR-GROOVE WATER STRUCTURE AT 2.2 ANGSTROMS RESOLUTION

Edwards, K.J., Brown, D.G., Spink, N., Neidle, S.

(1992) J Mol Biology 226: 1161-1173

Released	1993-01-15
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)-3') (nucleic acid)

Explore in 3D

1E2H \| pdb_00001e2h	Download File View File

The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography

Vogt, J., Scapozza, L., Schulz, G.E.

(2000) Proteins 41: 545

Released	2000-11-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	SO4

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1E2I \| pdb_00001e2i	Download File View File

The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography

Vogt, J., Scapozza, L., Schulz, G.E.

(2000) Proteins 41: 545

Released	2000-11-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	APS, ARP, SO4

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1E2J \| pdb_00001e2j	Download File View File

The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography

Vogt, J., Scapozza, L., Schulz, G.E.

(2000) Proteins 41: 545

Released	2000-11-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	SO4, THM

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1E2K \| pdb_00001e2k	Download File View File

Kinetics and crystal structure of the wild-type and the engineered Y101F mutant of Herpes simplex virus type 1 thymidine kinase interacting with (North)-methanocarba-thymidine

Vogt, J., Scapozza, L., Schulz, G.E.

(2000) Biochemistry 39: 9597

Released	2000-08-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	SO4, TMC

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1E2L \| pdb_00001e2l	Download File View File

Kinetics and crystal structure of the wild-type and the engineered Y101F mutant of Herpes simplex virus type 1 thymidine kinase interacting with (North)-methanocarba-thymidine

Vogt, J., Scapozza, L., Schulz, G.E.

(2000) Biochemistry 39: 9597

Released	2000-08-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	SO4, TMC

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1E2M \| pdb_00001e2m	Download File View File

HPT + HMTT

Vogt, J., Scapozza, L., Schulz, G.E.

(2001) Protein Sci 10: 63

Released	2001-03-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	HPT, SO4

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1E2N \| pdb_00001e2n	Download File View File

HPT + HMTT

Vogt, J., Scapozza, L., Schulz, G.E.

(2001) Protein Sci 10: 63

Released	2001-03-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	RCA, SO4

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1E2P \| pdb_00001e2p	Download File View File

Thymidine kinase, DHBT

Schulz, G.E., Kessler, U.

(2001) Protein Sci 10: 63

Released	2001-04-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human alphaherpesvirus 1
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	CCV, SO4

Explore in 3D

1KI2 \| pdb_00001ki2	Download File View File

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH GANCICLOVIR

Champness, J.N., Bennett, M.S., Wien, F., Brown, D.G., Visse, R., Sandhu, G., Davies, A., Rizkallah, P.J., Melitz, C., Summers, W.C., Sanderson, M.R.

(1998) Proteins 32: 350-361

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	GA2, SO4

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1KI3 \| pdb_00001ki3	Download File View File

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH PENCICLOVIR

Champness, J.N., Bennett, M.S., Wien, F., Visse, R., Jarvest, R.L., Summers, W.C., Sanderson, M.R.

(1998) Proteins 32: 350-361

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	PE2, SO4

Explore in 3D

1KI4 \| pdb_00001ki4	Download File View File

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH 5-BROMOTHIENYLDEOXYURIDINE

Champness, J.N., Bennett, M.S., Wien, F., Visse, R., Summers, W.C., Sanderson, M.R.

(1998) Proteins 32: 350-361

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	BTD, SO4

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1KI6 \| pdb_00001ki6	Download File View File

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH A 5-IODOURACIL ANHYDROHEXITOL NUCLEOSIDE

Champness, J.N., Bennett, M.S., Wien, F., Herdewijn, P., Ostrowski, T., Summers, W.C., Sanderson, M.R.

(1998) Proteins 32: 350-361

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	AHU, SO4

Explore in 3D

1KI7 \| pdb_00001ki7	Download File View File

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH 5-IODODEOXYURIDINE

Champness, J.N., Bennett, M.S., Wien, F., Visse, R., Summers, W.C., Sanderson, M.R.

(1998) Proteins 32: 350-361

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	ID2, SO4

Explore in 3D

1KI8 \| pdb_00001ki8	Download File View File

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH 5-BROMOVINYLDEOXYURIDINE

Champness, J.N., Bennett, M.S., Wien, F., Visse, R., Summers, W.C., Sanderson, M.R.

(1998) Proteins 32: 350-361

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	BVD, SO4

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1KIM \| pdb_00001kim	Download File View File

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH DEOXYTHYMIDINE

Champness, J.N., Bennett, M.S., Wien, F., Brown, D.G., Visse, R., Sandhu, G., Davies, A., Rizkallah, P.J., Melitz, C., Summers, W.C., Sanderson, M.R.

(1998) Proteins 32: 350-361

Released	1998-05-20
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	THYMIDINE KINASE (protein)
Unique Ligands	SO4, THM

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1POS \| pdb_00001pos	Download File View File

CRYSTAL STRUCTURE OF A NOVEL DISULFIDE-LINKED "TREFOIL" MOTIF FOUND IN A LARGE FAMILY OF PUTATIVE GROWTH FACTORS

De, A., Brown, D., Gorman, M., Carr, M., Sanderson, M.R., Freemont, P.S.

(1994) Proc Natl Acad Sci U S A 91: 1084-1088

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Sus scrofa
Macromolecule	PORCINE PANCREATIC SPASMOLYTIC POLYPEPTIDE (protein)

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295D \| pdb_0000295d	Download File View File

CRYSTAL AND SOLUTION STRUCTURES OF THE OLIGONUCLEOTIDE D(ATGCGCAT)2: A COMBINED X-RAY AND NMR STUDY

Clark, G.R., Brown, D.G., Sanderson, M.R., Chwalinski, T., Neidle, S., Veal, J.M., Jones, R.L., Wilson, W.D., Zon, G., Garman, E., Stuart, D.I.

(1990) Nucleic Acids Res 18: 5521-5528

Released	1996-12-04
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	DNA (5'-D(APTPGPCPGPCPAPT)-3') (nucleic acid)

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296D \| pdb_0000296d	Download File View File

SEQUENCE-DEPENDENT EFFECTS IN DRUG-DNA INTERACTION: THE CRYSTAL STRUCTURE OF HOECHST 33258 BOUND TO THE D(CGCAAATTTGCG)2 DUPLEX

Spink, N., Brown, D.G., Skelly, J.V., Neidle, S.

(1994) Nucleic Acids Res 22: 1607-1612

Released	1996-12-04
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	HT

Explore in 3D

2BTZ \| pdb_00002btz	Download File View File

crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands

Knoechel, T.R., Tucker, A.D., Robinson, C.M., Phillips, C., Taylor, W., Bungay, P.J., Kasten, S.A., Roche, T.E., Brown, D.G.

(2006) Biochemistry 45: 402

Released	2006-02-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PYRUVATE DEHYDROGENASE KINASE ISOENZYME 2 (protein)

Explore in 3D

2BU2 \| pdb_00002bu2	Download File View File

crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands

Knoechel, T.R., Tucker, A.D., Robinson, C.M., Phillips, C., Taylor, W., Bungay, P.J., Kasten, S.A., Roche, T.E., Brown, D.G.

(2006) Biochemistry 45: 402

Released	2006-02-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PYRUVATE DEHYDROGENSAE KINASE ISOENZYME 2 (protein)
Unique Ligands	ATP, MG, TF1

Explore in 3D

2BU5 \| pdb_00002bu5	Download File View File

crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands

Knoechel, T.R., Tucker, A.D., Robinson, C.M., Phillips, C., Taylor, W., Bungay, P.J., Kasten, S.A., Roche, T.E., Brown, D.G.

(2006) Biochemistry 45: 402

Released	2006-02-02
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	PYRUVATE DEHYDROGENASE KINASE ISOENZYME 2 (protein)
Unique Ligands	TF1

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2BU6 \| pdb_00002bu6	Download File View File

crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands

Knoechel, T.R., Tucker, A.D., Robinson, C.M., Phillips, C., Taylor, W., Bungay, P.J., Kasten, S.A., Roche, T.E., Brown, D.G.

(2006) Biochemistry 45: 402

Released	2006-02-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PYRUVATE DEHYDROGENASE KINASE ISOENZYME 2 (protein)
Unique Ligands	TF2

Explore in 3D

2BU7 \| pdb_00002bu7	Download File View File

crystal structures of human pyruvate dehydrogenase kinase 2 containing physiological and synthetic ligands

Knoechel, T.R., Tucker, A.D., Robinson, C.M., Phillips, C., Taylor, W., Bungay, P.J., Kasten, S.A., Roche, T.E., Brown, D.G.

(2006) Biochemistry 45: 402

Released	2006-02-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PYRUVATE DEHYDROGENASE KINASE ISOENZYME 2 (protein)
Unique Ligands	TF3

1 to 25 of 137 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D63 | pdb_00001d63

1D65 | pdb_00001d65

1E2H | pdb_00001e2h

1E2I | pdb_00001e2i

1E2J | pdb_00001e2j

1E2K | pdb_00001e2k

1E2L | pdb_00001e2l

1E2M | pdb_00001e2m

1E2N | pdb_00001e2n

1E2P | pdb_00001e2p

1KI2 | pdb_00001ki2

1KI3 | pdb_00001ki3

1KI4 | pdb_00001ki4

1KI6 | pdb_00001ki6

1KI7 | pdb_00001ki7

1KI8 | pdb_00001ki8

1KIM | pdb_00001kim

1POS | pdb_00001pos

295D | pdb_0000295d

296D | pdb_0000296d

2BTZ | pdb_00002btz

2BU2 | pdb_00002bu2

2BU5 | pdb_00002bu5

2BU6 | pdb_00002bu6

2BU7 | pdb_00002bu7