RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Krauskopf, K."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Bos taurus (10)
	synthetic construct (8)
	Homo sapiens (4)
	Asplenium bulbiferum subsp. bulbiferum (2)
	Dokdonia eikasta (2)
	Gallus gallus (1)
	Mus musculus (1)
	Pavo cristatus (1)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (16)
	other sequences (8)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (14)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (14)

Enzyme Classification Name

	Hydrolases (12)
	Ligases (7)
	Transferases (2)
	Isomerases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)

Symmetry Type

Asymmetric (18)

SCOP Classification

	All beta proteins (2)
	Artifacts (2)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

2M8I \| pdb_00002m8i	Download File View File

Structure of Pin1 WW domain

Luh, L.M., Kirchner, D.K., Loehr, F., Haensel, R., Doetsch, V.

(2013) J Am Chem Soc 135: 13796-13803

Released	2014-04-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

Explore in 3D

2M8J \| pdb_00002m8j	Download File View File

Structure of Pin1 WW domain phospho-mimic S16E

Luh, L.M., Kirchner, D.K., Loehr, F., Haensel, R., Doetsch, V.

(2013) J Am Chem Soc 135: 13796-13803

Released	2014-04-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

Explore in 3D

6FGN \| pdb_00006fgn	Download File View File

Solution Structure of p300Taz2-p63TA

Gebel, J., Kazemi, S., Lohr, F., Guntert, P., Dotsch, V.

(2018) Structure 26: 1091-1100.e4

Released	2018-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone acetyltransferase p300,Tumor protein 63 (protein)
Unique Ligands	ZN

Explore in 3D

6FGS \| pdb_00006fgs	Download File View File

Solution structure of p300Taz2-p73TA1

Gebel, J., Kazemi, S., Lohr, F., Guntert, P., Dotsch, V.

(2018) Structure 26: 1091-1100.e4

Released	2018-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone acetyltransferase p300,Tumor protein p73 (protein)
Unique Ligands	ZN

Explore in 3D

8CL5 \| pdb_00008cl5	Download File View File

Lysozyme in matrix of lipidic cubic phase of monoolein (LCP)

Bertrand, Q., Kepa, M.W., Weinert, T., Wranik, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Asplenium bulbiferum subsp. bulbiferum
Macromolecule	LYSOZYME, Chain A (protein)
Unique Ligands	1PE, CL, EDO, NA

Explore in 3D

8CL6 \| pdb_00008cl6	Download File View File

Lysozyme in matrix of hydroxyethylcellulose (HEC)

Bertrand, Q., Kepa, M.W., Weinert, T., Wranik, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Asplenium bulbiferum subsp. bulbiferum
Macromolecule	LYSOZYME, Chain A (protein)
Unique Ligands	1PE, CL, EDO, NA

Explore in 3D

8CL7 \| pdb_00008cl7	Download File View File

Krokinobacter eikastus rhodopsin 2 (KR2) in dark state

Bertrand, Q., Wranik, M., Kepa, M.W., Weinert, T., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

Explore in 3D

8CL8 \| pdb_00008cl8	Download File View File

Krokinobacter eikastus rhodopsin 2 (KR2) extrapolated map 1us after light activation

Bertrand, Q., Kepa, M.W., Weinert, T., Wranik, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

Explore in 3D

8CL9 \| pdb_00008cl9	Download File View File

Tubulin-DARPin D1 complex

Wranik, M., Bertrand, Q., Weinert, T., Kepa, M.W., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus synthetic construct
Macromolecule	DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GTP, MG

Explore in 3D

8CLA \| pdb_00008cla	Download File View File

Z-SBTubA4 photoswitch bound to tubulin-DARPin D1 complex

Wranik, M., Bertrand, Q., Kepa, M.W., Weinert, T., Steinmetz, M., Standfuss, J.

To be published

Released	2024-02-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	CA, GDP, GTP, I8R, MG

Explore in 3D

8CLB \| pdb_00008clb	Download File View File

Colchicine bound to tubulin (T2R-TTL) complex

Wranik, M., Kepa, M.W., Bertrand, Q., Weinert, T., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	ACP, CA, GDP, GTP, LOC, MG

Explore in 3D

8CLC \| pdb_00008clc	Download File View File

Tubulin (T2R-TTL) complex

Wranik, M., Bertrand, Q., Kepa, M.W., Weinert, T., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	ACP, CA, GDP, GTP, MG

Explore in 3D

8CLD \| pdb_00008cld	Download File View File

Ansamitocin P3 bound to tubulin (T2R-TTL) complex

Wranik, M., Kepa, M.W., Bertrand, Q., Weinert, T., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bos taurus Mus musculus Pavo cristatus
Macromolecule	Detyrosinated tubulin alpha-1B chain (protein) Stathmin-4 (protein) Tubulin beta-2B chain (protein) Tubulin tyrosine ligase (protein)
Unique Ligands	ACP, BKF, CA, GDP, GTP, MG

Explore in 3D

8CLE \| pdb_00008cle	Download File View File

Vinblastine bound to tubulin (T2R-TTL) complex

Wranik, M., Bertrand, Q., Kepa, M.W., Weinert, T., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	CA, GDP, GTP, MG, VLB

Explore in 3D

8CLF \| pdb_00008clf	Download File View File

Z-SolQ2Br bound to tubulin (T2R-TTL) complex

Wranik, M., Bertrand, Q., Kepa, M., Weinert, T., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	ACP, CA, GDP, GTP, MG, V1O

Explore in 3D

8CLG \| pdb_00008clg	Download File View File

Epothilone A and Colchicine bound to tubulin (T2R-TTL) complex

Wranik, M., Bertrand, Q., Kepa, M.W., Weinert, T., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	ACP, CA, EP, GDP, GTP, LOC, MG

Explore in 3D

8CLH \| pdb_00008clh	Download File View File

Drug cocktail (Colchicine, Epothilone A, Peloruside, Ansamitocin P3, Vinblastine) bound to tubulin (T2R-TTL) complex

Wranik, M., Bertrand, Q., Kepa, M.W., Weinert, T., Steinmetz, M., Standfuss, J.

(2023) Nat Commun 14: 7956-7956

Released	2023-12-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus Gallus gallus Rattus norvegicus
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein) Tubulin tyrosine ligase (protein)
Unique Ligands	ACP, BKF, CA, EP, GDP, GTP, LOC, MG, POU, VLB

Explore in 3D

9F8G \| pdb_00009f8g	Download File View File

Photostatin (photoswitchable azo-combretastatin) Z-PST27 bound to tubulin-DARPin D1 complex

Wranik, M., Steinmetz, M.O.

(2024) Chem Sci 15: 12301-12309

Released	2024-09-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	A1IBN, CA, GTP, MG

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2M8I | pdb_00002m8i

Structure of Pin1 WW domain

2M8J | pdb_00002m8j

Structure of Pin1 WW domain phospho-mimic S16E

6FGN | pdb_00006fgn

Solution Structure of p300Taz2-p63TA

6FGS | pdb_00006fgs

Solution structure of p300Taz2-p73TA1

8CL5 | pdb_00008cl5

Lysozyme in matrix of lipidic cubic phase of monoolein (LCP)

8CL6 | pdb_00008cl6

Lysozyme in matrix of hydroxyethylcellulose (HEC)

8CL7 | pdb_00008cl7

Krokinobacter eikastus rhodopsin 2 (KR2) in dark state

8CL8 | pdb_00008cl8

Krokinobacter eikastus rhodopsin 2 (KR2) extrapolated map 1us after light activation

8CL9 | pdb_00008cl9

Tubulin-DARPin D1 complex

8CLA | pdb_00008cla

Z-SBTubA4 photoswitch bound to tubulin-DARPin D1 complex

8CLB | pdb_00008clb

Colchicine bound to tubulin (T2R-TTL) complex

8CLC | pdb_00008clc

Tubulin (T2R-TTL) complex

8CLD | pdb_00008cld

Ansamitocin P3 bound to tubulin (T2R-TTL) complex

8CLE | pdb_00008cle

Vinblastine bound to tubulin (T2R-TTL) complex

8CLF | pdb_00008clf

Z-SolQ2Br bound to tubulin (T2R-TTL) complex

8CLG | pdb_00008clg

Epothilone A and Colchicine bound to tubulin (T2R-TTL) complex

8CLH | pdb_00008clh

Drug cocktail (Colchicine, Epothilone A, Peloruside, Ansamitocin P3, Vinblastine) bound to tubulin (T2R-TTL) complex

9F8G | pdb_00009f8g

Photostatin (photoswitchable azo-combretastatin) Z-PST27 bound to tubulin-DARPin D1 complex

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2M8I | pdb_00002m8i

2M8J | pdb_00002m8j

6FGN | pdb_00006fgn

6FGS | pdb_00006fgs

8CL5 | pdb_00008cl5

8CL6 | pdb_00008cl6

8CL7 | pdb_00008cl7

8CL8 | pdb_00008cl8

8CL9 | pdb_00008cl9

8CLA | pdb_00008cla

8CLB | pdb_00008clb

8CLC | pdb_00008clc

8CLD | pdb_00008cld

8CLE | pdb_00008cle

8CLF | pdb_00008clf

8CLG | pdb_00008clg

8CLH | pdb_00008clh

9F8G | pdb_00009f8g