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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, Z."

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Search Summary

This query matches 1,358 Structures.

Refinements

Structure Determination Methodology

experimental (1,358)

Scientific Name of Source Organism

	Homo sapiens (553)
	Severe acute respiratory syndrome coronavirus 2 (126)
	synthetic construct (88)
	Mus musculus (87)
	Escherichia coli (30)
	Sus scrofa (17)
	unidentified (17)
	Human immunodeficiency virus 1 (15)
	Rattus norvegicus (14)
	Severe acute respiratory syndrome coronavirus (13)

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Taxonomy

	Eukaryota (810)
	Bacteria (328)
	Riboviria (276)
	other sequences (88)
	Duplodnaviria (53)
	unclassified sequences (23)
	Monodnaviria (21)
	Archaea (13)
	Viruses incertae sedis (6)
	Eukaryota (eukaryotes) (2)

More...

Experimental Method

	X-RAY DIFFRACTION (719)
	ELECTRON MICROSCOPY (610)
	SOLUTION NMR (28)
	ELECTRON CRYSTALLOGRAPHY (1)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (1,351)
	RNA (121)
	DNA (94)
	NA-hybrid (5)

Refinement Resolution (Å)

	1.0 - 1.5 (60)
	1.5 - 2.0 (196)
	2.0 - 2.5 (253)
	2.5 - 3.0 (288)
	3.0 - 3.5 (258)
	3.5 - 4.0 (158)
	4.0 - 4.5 (55)
	> 4.5 (63)

Release Date

	1995 - 1999 (7)
	2000 - 2004 (19)
	2005 - 2009 (59)
	2010 - 2014 (137)
	2015 - 2019 (276)
	2020 - 2024 (836)
	2025 - 2029 (24)

Enzyme Classification Name

	Hydrolases (330)
	Transferases (198)
	Oxidoreductases (75)
	Ligases (24)
	Isomerases (24)
	Lyases (29)
	Translocases (8)

Membrane Protein Annotation

	PDBTM (153)
	mpstruc (114)
	MemProtMD (87)
	OPM (75)

Symmetry Type

	Asymmetric (884)
	Cyclic (390)
	Dihedral (40)
	Icosahedral (35)
	Helical (8)
	Octahedral (5)
	Tetrahedral (3)

SCOP Classification

	All beta proteins (76)
	Alpha and beta proteins (a/b) (94)
	All alpha proteins (75)
	Alpha and beta proteins (a+b) (52)
	Artifacts (62)
	Small proteins (14)
	Multi-domain proteins (alpha and beta) (11)
	Membrane and cell surface proteins and peptides (2)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 1,358 Structures

Page 1 of 55

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1ALQ \| pdb_00001alq	Download File View File

CIRCULARLY PERMUTED BETA-LACTAMASE FROM STAPHYLOCOCCUS AUREUS PC1

Pieper, U., Herzberg, O.

(1997) Biochemistry 36: 8767-8774

Released	1997-09-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Staphylococcus aureus
Macromolecule	CP254 BETA-LACTAMASE (protein)
Unique Ligands	CO3, SO4

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1DBU \| pdb_00001dbu	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)
Unique Ligands	HG

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1DBX \| pdb_00001dbx	Download File View File

Crystal structure of cysteinyl-tRNA(Pro) deacylase from H. influenzae (HI1434)

Zhang, H., Huang, K., Li, Z., Herzberg, O., Structure 2 Function Project (S2F)

(2000) Proteins 40: 86-97

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	cysteinyl-tRNA(Pro) deacylase (protein)

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1DJD \| pdb_00001djd	Download File View File

THE SOLUTION STRUCTURE OF A NON-BAY REGION 11R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 14820-14832

Released	1999-12-16
Method	SOLUTION NMR
Macromolecule	DNA(5'-D(CTGTGTATCTATATGTATATG)-3') (nucleic acid) DNA(5'-D(CTTTTTCTTTTTGTTTCTCTG)-3') (nucleic acid)
Unique Ligands	TBT

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1DL4 \| pdb_00001dl4	Download File View File

THE SOLUTION STRUCTURE OF A BAY-REGION 1S-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.-Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 16045-16057

Released	2000-01-12
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCP(BZA)APAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)
Unique Ligands	BZA

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1FJ4 \| pdb_00001fj4	Download File View File

THE STRUCTURE OF BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I IN COMPLEX WITH THIOLACTOMYCIN, IMPLICATIONS FOR DRUG DESIGN

Price, A.C., Choi, K., Heath, R.J., Li, Z., White, S.W., Rock, C.O.

(2001) J Biological Chem 276: 6551-6559

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I (protein)
Unique Ligands	TLM

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1FJ8 \| pdb_00001fj8	Download File View File

THE STRUCTURE OF BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I IN COMPLEX WITH CERULENIN, IMPLICATIONS FOR DRUG DESIGN

Price, A.C., Choi, K., Heath, R.J., Li, Z., White, S.W., Rock, C.O.

(2001) J Biological Chem 276: 6551-6559

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Escherichia coli
Macromolecule	BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I (protein)
Unique Ligands	CER

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1FT4 \| pdb_00001ft4	Download File View File

PHOTOCHEMICALLY-ENHANCED BINDING OF SMALL MOLECULES TO THE TUMOR NECROSIS FACTOR RECEPTOR-1

Muckelbauer, J.K., Chang, C.-H.

(2001) Proc Natl Acad Sci U S A 98: 11879-11884

Released	2001-10-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SOLUBLE TUMOR NECROSIS FACTOR RECEPTOR 1 (protein)
Unique Ligands	703

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1GGO \| pdb_00001ggo	Download File View File

T453A MUTANT OF PYRUVATE, PHOSPHATE DIKINASE

Li, Z., Herzberg, O.

(2000) J Biological Chem 275: 41156-41165

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PROTEIN (PYRUVATE, PHOSPHATE DIKINASE) (protein)
Unique Ligands	SO4

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1H9D \| pdb_00001h9d	Download File View File

Aml1/cbf-beta/dna complex

Bravo, J., Warren, A.J.

(2001) Nat Struct Biol 8: 371

Released	2001-03-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CORE-BINDING FACTOR ALPHA SUBUNIT1 (protein) CORE-BINDING FACTOR CBF-BETA (protein) DNA (5'-(CPAPAPCPCPGPCPAPAPC)-3') (nucleic acid) DNA (5'-(GPTPTPGPCPGPGPTPTPG)-3') (nucleic acid)

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1HW1 \| pdb_00001hw1	Download File View File

THE FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ESCHERICHIA COLI

Xu, Y., Heath, R.J., Li, Z., Rock, C.O., White, S.W.

(2001) J Biological Chem 276: 17373-17379

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	FATTY ACID METABOLISM REGULATOR PROTEIN (protein)
Unique Ligands	SO4, ZN

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1HW2 \| pdb_00001hw2	Download File View File

FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ECHERICHIA COLI

Xu, Y., Heath, R.J., Li, Z., Rock, C.O., White, S.W.

(2001) J Biological Chem 276: 17373-17379

Released	2001-01-22
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Escherichia coli
Macromolecule	FATTY ACID METABOLISM REGULATOR PROTEIN (protein) 5'-D(CPGPAPTPCPTPGPGPTPCPCPGPAPCPCPAPGPAPTPGPCPT)-3' (nucleic acid) 5'-D(GCPAPTPCPTPGPGPTPCPGPGPAPCPCPAPGPAPTPCPGPA)-3' (nucleic acid)
Unique Ligands	MG

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1I7V \| pdb_00001i7v	Download File View File

THE SOLUTION STRUCTURE OF A BAY REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Tamura, P.J., Wilkinson, A.S., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 6743-6755

Released	2001-03-28
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCPAP(BZA)APGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)
Unique Ligands	BZA

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1KBL \| pdb_00001kbl	Download File View File

PYRUVATE PHOSPHATE DIKINASE

Herzberg, O., Chen, C.C., Liu, S.

(2002) Biochemistry 41: 780-787

Released	2002-01-30
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PYRUVATE PHOSPHATE DIKINASE (protein)
Unique Ligands	NH4, SO4

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1KC7 \| pdb_00001kc7	Download File View File

Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate

Chen, C.C., Howard, A., Herzberg, O.

(2002) Biochemistry 41: 780-787

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	[Clostridium] symbiosum
Macromolecule	pyruvate phosphate dikinase (protein)
Unique Ligands	MG, PPR, SO4

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1KGE \| pdb_00001kge	Download File View File

STRUCTURE OF BETA-LACTAMASE ASN 170 MET MUTANT

Chen, C.C.H., Zawadzke, L.E., Herzberg, O.

(1996) Biochemistry 35: 16475-16482

Released	1997-04-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	BETA-LACTAMASE (protein)

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1KGF \| pdb_00001kgf	Download File View File

STRUCTURE OF BETA-LACTAMASE ASN 170 GLN MUTANT

Chen, C.C.H., Zawadzke, L.E., Herzberg, O.

(1996) Biochemistry 35: 16475-16482

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	BETA-LACTAMASE (protein)

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1M62 \| pdb_00001m62	Download File View File

Solution structure of the BAG domain from BAG4/SODD

Briknarova, K., Takayama, S., Homma, S., Baker, K., Cabezas, E., Hoyt, D.W., Li, Z., Satterthwait, A.C., Ely, K.R.

(2002) J Biological Chem 277: 31172-31178

Released	2002-07-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	BAG-family molecular chaperone regulator-4 (protein)

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1NI7 \| pdb_00001ni7	Download File View File

NORTHEAST STRUCTURAL GENOMIC CONSORTIUM TARGET ER75

Liu, G., Chiang, Y., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2005) Protein Sci 14: 1597-1608

Released	2003-06-03
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Hypothetical protein ygdK (protein)

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1NW3 \| pdb_00001nw3	Download File View File

Structure of the Catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase

Min, J.R., Feng, Q., Li, Z.H., Zhang, Y., Xu, R.M.

(2003) Cell 112: 711-723

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	histone methyltransferase DOT1L (protein)
Unique Ligands	ACT, SAM, SO4

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1PYM \| pdb_00001pym	Download File View File

PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE

Huang, K., Li, Z., Herzberg, O.

(1999) Structure 7: 539-548

Released	1999-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mytilus edulis
Macromolecule	PROTEIN (PHOSPHOENOLPYRUVATE MUTASE) (protein)
Unique Ligands	MG, OXL

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1QBY \| pdb_00001qby	Download File View File

THE SOLUTION STRUCTURE OF A BAY-REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Mao, H., Kim, H.-Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 2969-2981

Released	1999-05-06
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(BZA)APAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCP G)-3' (nucleic acid)
Unique Ligands	BZA

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1QXF \| pdb_00001qxf	Download File View File

SOLUTION STRUCTURE OF 30S RIBOSOMAL PROTEIN S27E FROM ARCHAEOGLOBUS FULGIDUS: GR2, A NESG TARGET PROTEIN

Herve Du Penhoat, C., Atreya, H.S., Shen, Y., Liu, G., Acton, T.B., Xiao, R., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2004) Protein Sci 13: 1407-1416

Released	2003-09-16
Method	SOLUTION NMR
Organisms	Archaeoglobus fulgidus
Macromolecule	30S RIBOSOMAL PROTEIN S27E (protein)

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1R5I \| pdb_00001r5i	Download File View File

Crystal structure of the MAM-MHC complex

Zhao, Y., Li, Z., Drozd, S.J., Guo, Y., Mourad, W., Li, H.

(2004) Structure 12: 277-288

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Influenza A virus (strain A/Swine/Hong Kong/81/1978 H3N2) Metamycoplasma arthritidis
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein) Hemagglutinin peptide (protein) superantigen (protein)
Unique Ligands	PO4

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1T2T \| pdb_00001t2t	Download File View File

Crystal structure of the DNA-binding domain of intron endonuclease I-TevI with operator site

Edgell, D.R., Derbyshire, V., Van Roey, P., LaBonne, S., Stanger, M.J., Li, Z., Boyd, T.M., Shub, D.A., Belfort, M.

(2004) Nat Struct Mol Biol 11: 936-944

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Tequatrovirus T4
Macromolecule	Intron-associated endonuclease 1 (protein) 5'-D(APAPTPTPAPAPAPGPGPGPCPAPGPTPCPCPTPAPCPAPA)-3' (nucleic acid) 5'-D(TPTPTPGPTPAPGPGPAPCPTPGPCPCPCPTPTPTPAPAPT)-3' (nucleic acid)
Unique Ligands	ZN

1 to 25 of 1,358 Structures

Page 1 of 55

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ALQ | pdb_00001alq

1DBU | pdb_00001dbu

1DBX | pdb_00001dbx

1DJD | pdb_00001djd

1DL4 | pdb_00001dl4

1FJ4 | pdb_00001fj4

1FJ8 | pdb_00001fj8

1FT4 | pdb_00001ft4

1GGO | pdb_00001ggo

1H9D | pdb_00001h9d

1HW1 | pdb_00001hw1

1HW2 | pdb_00001hw2

1I7V | pdb_00001i7v

1KBL | pdb_00001kbl

1KC7 | pdb_00001kc7

1KGE | pdb_00001kge

1KGF | pdb_00001kgf

1M62 | pdb_00001m62

1NI7 | pdb_00001ni7

1NW3 | pdb_00001nw3

1PYM | pdb_00001pym

1QBY | pdb_00001qby

1QXF | pdb_00001qxf

1R5I | pdb_00001r5i

1T2T | pdb_00001t2t