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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lin, X."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Homo sapiens (13)
	Canis lupus familiaris (6)
	Enterobacter cloacae subsp. cloacae ATCC 13047 (5)
	Enterobacter cloacae (3)
	Aquifex aeolicus VF5 (1)
	Escherichia coli K-12 (1)
	Haemophilus influenzae Rd KW20 (1)

Taxonomy

	Eukaryota (17)
	Bacteria (11)

Experimental Method

X-RAY DIFFRACTION (28)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (14)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (11)
	2020 - 2024 (14)

Enzyme Classification Name

	Transferases (12)
	Hydrolases (3)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (20)
	Dihedral (5)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a+b) (12)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (3)
	All alpha proteins (1)

AllSelected

1 to 25 of 28 Structures

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1X70 \| pdb_00001x70	Download File View File

HUMAN DIPEPTIDYL PEPTIDASE IV IN COMPLEX WITH A BETA AMINO ACID INHIBITOR

Kim, D., Wang, L., Beconi, M., Eiermann, G.J., Fisher, M.H., He, H., Hickey, G.J., Leiting, B., Lyons, K.

(2005) J Med Chem 48: 141-151

Released	2005-01-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase IV (protein)
Unique Ligands	715, NA, NAG
Unique branched monosaccharides	NAG, NDG

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2HHA \| pdb_00002hha	Download File View File

The structure of DPP4 in complex with an oxadiazole inhibitor

Scapin, G.

(2006) Bioorg Med Chem Lett 16: 5373-5377

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Hypothetical protein DPP4 (protein)
Unique Ligands	3TP, NA, NAG
Unique branched monosaccharides	NAG, NDG

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2QOE \| pdb_00002qoe	Download File View File

Human Dipeptidyl Peptidase IV in complex with a Triazolopiperazine-based beta amino acid Inhibitor

Scapin, G.

(2007) Bioorg Med Chem Lett 17: 5934-5939

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	448, NA, NAG
Unique branched monosaccharides	NAG, NDG

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3SPB \| pdb_00003spb	Download File View File

Unliganded E. Cloacae MurA

Zhu, J.-Y., Yang, Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Enterobacter cloacae subsp. cloacae ATCC 13047
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)

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3SU9 \| pdb_00003su9	Download File View File

E. Cloacae MURA in complex with UDP-N-acetylmuramic acid and covalent adduct of PEP with Cys115

Zhu, J.-Y., Yang, Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterobacter cloacae subsp. cloacae ATCC 13047
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	ACT, EDO, EPZ

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3SWA \| pdb_00003swa	Download File View File

E. Cloacae MurA R120A complex with UNAG and covalent adduct of PEP with CYS115

Han, H., Zhu, J.-Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterobacter cloacae subsp. cloacae ATCC 13047
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	EDO, UD1

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3SWD \| pdb_00003swd	Download File View File

E. coli MurA in complex with UDP-N-acetylmuramic acid and covalent adduct of PEP with Cys115

Zhu, J.-Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	EPZ

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3SWE \| pdb_00003swe	Download File View File

Haemophilus influenzae MurA in complex with UDP-N-acetylmuramic acid and covalent adduct of PEP with Cys117

Zhu, J.-Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	EPZ, GOL, SO4

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3SWG \| pdb_00003swg	Download File View File

AQUIFEX AEOLICUS MurA in complex with UDP-N-acetylmuramic acid and covalent adduct of PEP with Cys124

Zhu, J.-Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	EDO, EPZ, PEG, PG4, PGE

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3SWI \| pdb_00003swi	Download File View File

E. Cloacae MurA in complex with Enolpyruvyl-UDP-N-acetylgalactosamine and covalent adduct of PEP with CYS115

Zhu, J.-Y., Yang, Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterobacter cloacae subsp. cloacae ATCC 13047
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	MG, MOE, PG0, UD2, UPN

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3SWQ \| pdb_00003swq	Download File View File

E. Cloacae MurA in complex with Enolpyruvyl-UNAG

Zhu, J.-Y., Yang, Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Enterobacter cloacae subsp. cloacae ATCC 13047
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	ACT, EDO, EPU, PEG, PGE

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3UPK \| pdb_00003upk	Download File View File

E. cloacae MURA in complex with UNAG

Zhu, J.-Y., Yang, Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterobacter cloacae
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	EDO, PGE, UD1

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3V4T \| pdb_00003v4t	Download File View File

E. cloacae C115D MURA liganded with UNAG

Zhu, J.-Y., Yang, Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterobacter cloacae
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	ACT, EDO, UD1

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3V5V \| pdb_00003v5v	Download File View File

UNLIGANDED E.CLOACAE C115D MURA

Zhu, J.-Y., Yang, Y., Schonbrunn, E.

(2012) J Biological Chem 287: 12657-12667

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterobacter cloacae
Macromolecule	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (protein)
Unique Ligands	ACT, EDO, PEG, PGE

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5S9O \| pdb_00005s9o	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN BRD2 BD1 BROMODOMAIN IN COMPLEX WITH 9-(cyclopropylmethyl)-7-[(2R,6S)-2,6-dimethylmorpholine-4-carbonyl]-3-(3,5-dimethyl-1,2-oxazol-4-yl)-9H-carbazole-1-carboxamide

Sheriff, S.

(2021) J Med Chem 64: 14247-14265

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 2 (protein)
Unique Ligands	EDO, YW1

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5S9P \| pdb_00005s9p	Download File View File

CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH 9-benzyl-2-(3,5-dimethyl-1,2-oxazol-4-yl)-7-(2-hydroxypropan-2-yl)-9H-carbazole-4-carboxamide

Sheriff, S.

(2021) J Med Chem 64: 14247-14265

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	EDO, YW4

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5S9Q \| pdb_00005s9q	Download File View File

CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH 2-(3,5-dimethyl-1,2-oxazol-4-yl)-7-(2-hydroxypropan-2-yl)-9-[(S)-(oxan-4-yl)(phenyl)methyl]-9H-carbazole-4-carboxamide

Sheriff, S.

(2021) J Med Chem 64: 14247-14265

Released	2021-09-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	EDO, YW7

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5S9R \| pdb_00005s9r	Download File View File

CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH BMS-986158, 2-{3-(1,4-dimethyl-1H-1,2,3-triazol-5-yl)-5-[(S)-(oxan-4-yl)(phenyl)methyl]-5H-pyrido[3,2-b]indol-7-yl}propan-2-ol

Sheriff, S.

(2021) J Med Chem 64: 14247-14265

Released	2021-09-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	EDO, IOD, YWA

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7KAC \| pdb_00007kac	Download File View File

Crystal structure of HPK1 (MAP4K1) kinase in complex with 5-{[4-{[(1S)-2-HYDROXY-1-PHENYLETHYL]AMINO}-5-(1,3,4-OXADIAZOL-2-YL)PYRIMIDIN-2-YL]AMINO}-3,3-DIMETHYL-2-BENZOFURAN-1(3H)-ONE

Sheriff, S.

(2021) Acta Crystallogr F Struct Biol Commun 77: 22-28

Released	2021-01-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2 of Mitogen-activated protein kinase kinase kinase kinase 1 (protein)
Unique Ligands	W9D