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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mykhaylyk, V."

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Search Summary

This query matches 59 Structures.

Refinements

Structure Determination Methodology

experimental (59)

Scientific Name of Source Organism

	Klebsiella pneumoniae (43)
	Pseudomonas aeruginosa (9)
	Homo sapiens (5)
	Acinetobacter baumannii (1)
	metagenome (1)

Taxonomy

	Bacteria (53)
	Eukaryota (5)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (59)

Polymer Entity Type

Protein (59)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (34)
	2.0 - 2.5 (17)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (55)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (48)

Symmetry Type

	Asymmetric (51)
	Cyclic (8)

SCOP Classification

	Multi-domain proteins (alpha and beta) (42)
	Alpha and beta proteins (a+b) (10)
	Alpha and beta proteins (a/b) (5)

AllSelected

1 to 25 of 59 Structures

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5ACU \| pdb_00005acu	Download File View File

VIM-2-NAT, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening

Christopeit, T., Carlsen, T.J.O., Helland, R., Leiros, H.K.S.

(2015) J Med Chem 58: 8671

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	CL, OH, ZN

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5ACV \| pdb_00005acv	Download File View File

VIM-2-OX, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening

Christopeit, T., Carlsen, T.J.O., Helland, R., Leiros, H.K.S.

(2015) J Med Chem 58: 8671

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.963 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	CL, OH, ZN

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5ACW \| pdb_00005acw	Download File View File

VIM-2-1, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening

Christopeit, T., Carlsen, T.J.O., Helland, R., Leiros, H.K.S.

(2015) J Med Chem 58: 8671

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	CL, OH, RHU, ZN

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5ACX \| pdb_00005acx	Download File View File

VIM-2-2, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening

Christopeit, T., Carlsen, T.J.O., Helland, R., Leiros, H.K.S.

(2015) J Med Chem 58: 8671

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	CL, OH, WL3, ZN

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5BN8 \| pdb_00005bn8	Download File View File

Crystal structure of nucleotide-free human Hsp70 NBD.

Narayanan, D., Engh, R.A.

To be published

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Homo sapiens
Macromolecule	Heat shock 70 kDa protein 1A (protein)
Unique Ligands	CL, EPE, MG, NA, PO4

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5BN9 \| pdb_00005bn9	Download File View File

Crystal structure of ADP bound human Hsp70 NBD mutant R272K.

Narayanan, D., Engh, R.A.

To be published

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.689 Å
Organisms	Homo sapiens
Macromolecule	Heat shock 70 kDa protein 1A (protein)
Unique Ligands	ADP, CL, EPE, NA, PO4

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5BPL \| pdb_00005bpl	Download File View File

Crystal structure of ADP and Pi bound human Hsp70 NBD mutant R272K.

Narayanan, D., Engh, R.A.

To be published

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	Heat shock 70 kDa protein 1A (protein)
Unique Ligands	ADP, CL, EPE, MG, NA, PO4

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5BPM \| pdb_00005bpm	Download File View File

Crystal structure of unhydrolyzed ATP bound human Hsp70 NBD double mutant E268Q+R272K.

Narayanan, D., Engh, R.A.

To be published

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Heat shock 70 kDa protein 1A (protein)
Unique Ligands	ATP, CL, MG, NA

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5BPN \| pdb_00005bpn	Download File View File

Crystal structure of nucleotide-free human Hsp70 NBD double mutant E268Q+R272K.

Narayanan, D., Engh, R.A.

To be published

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Heat shock 70 kDa protein 1A (protein)
Unique Ligands	CL, PO4, TRS

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5DTK \| pdb_00005dtk	Download File View File

Fragments bound to the OXA-48 beta-lactamase: Compound 17

Lund, B.A., Christopeit, T., Leiros, H.-K.S.

(2016) J Med Chem 59: 5542-5554

Released	2016-05-25
Method	X-RAY DIFFRACTION 1.60000241571 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	5F3, CL, EDO

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5DTS \| pdb_00005dts	Download File View File

Fragments bound to the OXA-48 beta-lactamase: Compound 2

Lund, B.A., Christopeit, T., Leiros, H.-K.S.

(2016) J Med Chem 59: 5542-5554

Released	2016-05-25
Method	X-RAY DIFFRACTION 1.94015871727 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	5F8, CL

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5DTT \| pdb_00005dtt	Download File View File

Fragments bound to the OXA-48 beta-lactamase: Compound 3

Lund, B.A., Christopeit, T., Leiros, H.-K.S.

(2016) J Med Chem 59: 5542-5554

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.10000527 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	5F5, CL, EDO

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5DVA \| pdb_00005dva	Download File View File

Fragments bound to the OXA-48 beta-lactamase: Compound 1

Lund, B.A., Christopeit, T., Leiros, H.-K.S.

(2016) J Med Chem 59: 5542-5554

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.50003891197 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	5FL, CL

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5LSC \| pdb_00005lsc	Download File View File

The structure of the metallo-beta-lactamase VIM-2 in complex with a triazolylthioacetamide inhibitor

Christopeit, T., Yang, K.-W., Yang, S.-K., Leiros, H.-K.S.

(2016) Acta Crystallogr F Struct Biol Commun 72: 813-819

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.497 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Metallo-beta-lactamase VIM-2-like protein (protein)
Unique Ligands	752, CL, ZN

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5MMD \| pdb_00005mmd	Download File View File

TMB-1. Structural insights into TMB-1 and the role of residue 119 and 228 in substrate and inhibitor binding

Skagseth, S., Christopeit, T., Akhter, S., Bayer, A., Samuelsen, O., Leiros, H.-K.S.

(2017) Antimicrob Agents Chemother 61:

Released	2017-03-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Acinetobacter baumannii
Macromolecule	Metallo-beta-lactamase 1 (protein)
Unique Ligands	CL, ZN

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5OFT \| pdb_00005oft	Download File View File

Structural basis for OXA-48 dimerization

Lund, B.A., Nesheim, B.H.B., Leiros, H.K.S.

(2018) FEBS J 285: 4214-4228

Released	2018-08-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)

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5QA4 \| pdb_00005qa4	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 3a

Lund, B.A.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, EDO, TI7

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5QA5 \| pdb_00005qa5	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 3b

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, EDO, L5D

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5QA6 \| pdb_00005qa6	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 4a

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	AUV, CL, EDO

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5QA7 \| pdb_00005qa7	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 4b

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, EDO, IQQ

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5QA8 \| pdb_00005qa8	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 4c

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, JSX

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5QA9 \| pdb_00005qa9	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 5

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, EDO, QKU

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5QAA \| pdb_00005qaa	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 6a

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, EAJ, EDO

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5QAB \| pdb_00005qab	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 6b

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, EDO, XEV

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5QAC \| pdb_00005qac	Download File View File

OXA-48 IN COMPLEX WITH COMPOUND 6c

Lund, B.A., Leiros, H.K.S.

(2018) Eur J Med Chem 145: 634-648

Released	2018-01-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, EDO, U4J

1 to 25 of 59 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5ACU | pdb_00005acu

5ACV | pdb_00005acv

5ACW | pdb_00005acw

5ACX | pdb_00005acx

5BN8 | pdb_00005bn8

5BN9 | pdb_00005bn9

5BPL | pdb_00005bpl

5BPM | pdb_00005bpm

5BPN | pdb_00005bpn

5DTK | pdb_00005dtk

5DTS | pdb_00005dts

5DTT | pdb_00005dtt

5DVA | pdb_00005dva

5LSC | pdb_00005lsc

5MMD | pdb_00005mmd

5OFT | pdb_00005oft

5QA4 | pdb_00005qa4

5QA5 | pdb_00005qa5

5QA6 | pdb_00005qa6

5QA7 | pdb_00005qa7

5QA8 | pdb_00005qa8

5QA9 | pdb_00005qa9

5QAA | pdb_00005qaa

5QAB | pdb_00005qab

5QAC | pdb_00005qac