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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Newman, J."

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Search Summary

This query matches 298 Structures.

Refinements

Structure Determination Methodology

experimental (298)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (73)
	Homo sapiens (62)
	Human immunodeficiency virus (20)
	Pseudomonas sp. ADP (17)
	Bos taurus (14)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (13)
	Sphingomonas paucimobilis (9)
	Pseudomonas (6)
	Clostridium perfringens str. 13 (5)
	Influenza B virus (B/Perth/211/2001) (5)

More...

Taxonomy

	Riboviria (119)
	Eukaryota (96)
	Bacteria (94)
	Archaea (3)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (296)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (298)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (22)
	1.5 - 2.0 (159)
	2.0 - 2.5 (77)
	2.5 - 3.0 (30)
	3.0 - 3.5 (4)
	3.5 - 4.0 (3)
	> 4.5 (2)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (4)
	2000 - 2004 (11)
	2005 - 2009 (1)
	2010 - 2014 (150)
	2015 - 2019 (87)
	2020 - 2024 (38)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (106)
	Hydrolases (78)
	Lyases (9)
	Oxidoreductases (3)

Membrane Protein Annotation

	MemProtMD (3)
	OPM (3)
	PDBTM (3)
	mpstruc (2)

Symmetry Type

	Cyclic (163)
	Asymmetric (107)
	Dihedral (25)
	Icosahedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (122)
	All beta proteins (41)
	Alpha and beta proteins (a+b) (26)
	Artifacts (25)
	All alpha proteins (5)
	Low resolution protein structures (1)
	Small proteins (1)

AllSelected

1 to 25 of 298 Structures

Page 1 of 12

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1BKB \| pdb_00001bkb	Download File View File

INITIATION FACTOR 5A FROM ARCHEBACTERIUM PYROBACULUM AEROPHILUM

Peat, T.S., Newman, J., Waldo, G.S., Berendzen, J., Terwilliger, T.C.

(1998) Structure 6: 1207-1214

Released	1998-11-04
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	TRANSLATION INITIATION FACTOR 5A (protein)

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1BN6 \| pdb_00001bn6	Download File View File

HALOALKANE DEHALOGENASE FROM A RHODOCOCCUS SPECIES

Newman, J., Peat, T.S., Richard, R., Kan, L., Swanson, P.E., Affholter, J.A., Holmes, I.H., Schindler, J.F., Unkefer, C.J., Terwilliger, T.C.

(1999) Biochemistry 38: 16105-16114

Released	2000-02-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1BN7 \| pdb_00001bn7	Download File View File

HALOALKANE DEHALOGENASE FROM A RHODOCOCCUS SPECIES

Newman, J., Peat, T.S., Richard, R., Kan, L., Swanson, P.E., Affholter, J.A., Holmes, I.H., Schindler, J.F., Unkefer, C.J., Terwilliger, T.C.

(1999) Biochemistry 38: 16105-16114

Released	2000-02-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	ACT

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1CQW \| pdb_00001cqw	Download File View File

NAI COCRYSTALLISED WITH HALOALKANE DEHALOGENASE FROM A RHODOCOCCUS SPECIES

Newman, J., Peat, T.S., Richard, R., Kan, L., Swanson, P.E., Affholter, J.A., Holmes, I.H., Schindler, J.F., Unkefer, C.J., Terwilliger, T.C.

(1999) Biochemistry 38: 16105-16114

Released	1999-08-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	HALOALKANE DEHALOGENASE; 1-CHLOROHEXANE HALIDOHYDROLASE (protein)
Unique Ligands	IOD

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1CV2 \| pdb_00001cv2	Download File View File

Hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 AT 1.6 A resolution

Marek, J., Vevodova, J., Damborsky, J., Smatanova, I., Svensson, L.A., Newman, J., Nagata, Y., Takagi, M.

(2000) Biochemistry 39: 14082-14086

Released	2000-09-11
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1D07 \| pdb_00001d07	Download File View File

Hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 with 1,3-propanediol, a product of debromidation of dibrompropane, at 2.0A resolution

Marek, J., Vevodova, J., Damborsky, J., Smatanova, I., Svensson, L.A., Newman, J., Nagata, Y., Takagi, M.

(2000) Biochemistry 39: 14082-14086

Released	2000-09-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	BR, PDO

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1FMD \| pdb_00001fmd	Download File View File

THE STRUCTURE AND ANTIGENICITY OF A TYPE C FOOT-AND-MOUTH DISEASE VIRUS

Lea, S., Fry, E., Stuart, D.

(1994) Structure 2: 123-139

Released	1994-08-31
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Foot-and-mouth disease virus
Macromolecule	FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) (protein) FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) (protein)

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1FOD \| pdb_00001fod	Download File View File

STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS

Logan, D.T., Lea, S., Lewis, R., Stuart, D., Fry, E.

(1993) Nature 362: 566-568

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Foot-and-mouth disease virus
Macromolecule	FOOT AND MOUTH DISEASE VIRUS (protein)

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1G42 \| pdb_00001g42	Download File View File

STRUCTURE OF 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE (LINB) FROM SPHINGOMONAS PAUCIMOBILIS COMPLEXED WITH 1,2-DICHLOROPROPANE

Oakley, A.J., Prokop, Z., Bohac, M., Kmunicek, J., Jedlicka, T., Monincova, M., Kuta-Smatanova, I., Nagata, Y., Damborsky, J., Wilce, M.C.J.

(2002) Biochemistry 41: 4847-4855

Released	2001-10-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE (protein)
Unique Ligands	ACT, CA, CL, CP2

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1G4H \| pdb_00001g4h	Download File View File

LINB COMPLEXED WITH BUTAN-1-OL

Oakley, A.J., Prokop, Z., Bohac, M., Kmunicek, J., Jedlicka, T., Monincova, M., Kuta-Smatanova, I., Nagata, Y., Damborsky, J., Wilce, M.C.J.

(2002) Biochemistry 41: 4847-4855

Released	2001-10-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE (protein)
Unique Ligands	1BO, CA, CL

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1G5F \| pdb_00001g5f	Download File View File

STRUCTURE OF LINB COMPLEXED WITH 1,2-DICHLOROETHANE

Oakley, A.J., Prokop, Z., Bohac, M., Kmunicek, J., Jedlicka, T., Monincova, M., Kuta-Smatanova, I., Nagata, Y., Damborsky, J., Wilce, M.C.J.

(2002) Biochemistry 41: 4847-4855

Released	2001-11-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE (protein)
Unique Ligands	CA, CL, DCE

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1IZ7 \| pdb_00001iz7	Download File View File

Re-refinement of the structure of hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 AT 1.6 A resolution

Streltsov, V.A.

(2003) Biochemistry 42: 10104-10112

Released	2002-10-16
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	HALOALKANE DEHALOGENASE, LINB (protein)
Unique Ligands	CA, CL

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1IZ8 \| pdb_00001iz8	Download File View File

Re-refinement of the structure of hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 with 1,3-propanediol, a product of debromidation of dibrompropane, at 2.0A resolution

Streltsov, V.A.

(2003) Biochemistry 42: 10104-10112

Released	2002-10-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	HALOALKANE DEHALOGENASE, LINB (protein)
Unique Ligands	BR, CA, PDO

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1MJ5 \| pdb_00001mj5	Download File View File

LINB (haloalkane dehalogenase) from sphingomonas paucimobilis UT26 at atomic resolution

Oakley, A.J., Damborsky, J., Wilce, M.C.

(2004) Biochemistry 43: 870-878

Released	2003-08-27
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase (protein)
Unique Ligands	CL, MG

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1QGC \| pdb_00001qgc	Download File View File

STRUCTURE OF THE COMPLEX OF A FAB FRAGMENT OF A NEUTRALIZING ANTIBODY WITH FOOT AND MOUTH DISEASE VIRUS

Fita, I.

(1997) EMBO J 16: 1492-1500

Released	2000-01-26
Method	ELECTRON MICROSCOPY 30 Å
Organisms	Foot and mouth disease virus C Mus musculus
Macromolecule	Unique protein chains: 6

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1QP8 \| pdb_00001qp8	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE FORMATE DEHYDROGENASE FROM PYROBACULUM AEROPHILUM

Peat, T.S., Newman, J., Waldo, G.S., Terwilliger, T.C.

To be published

Released	1999-06-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	FORMATE DEHYDROGENASE (protein)
Unique Ligands	NDP

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1RBL \| pdb_00001rbl	Download File View File

STRUCTURE DETERMINATION AND REFINEMENT OF RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE FROM SYNECHOCOCCUS PCC6301

Newman, J., Gutteridge, S., Branden, C.-I., Jones, T.A.

(1993) Acta Crystallogr D Biol Crystallogr 49: 548-560

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Synechococcus elongatus PCC 6301
Macromolecule	RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) (protein) RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) (protein)
Unique Ligands	CAP, FMT, MG

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1RSC \| pdb_00001rsc	Download File View File

STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULOSE BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEX BETWEEN ENZYME AND XYLULOSE BISPHOSPHATE

Newman, J., Gutteridge, S.

(1994) Structure 2: 495-502

Released	1995-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Synechococcus elongatus PCC 6301
Macromolecule	RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) (protein) RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) (protein)
Unique Ligands	XBP

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2BFN \| pdb_00002bfn	Download File View File

The crystal structure of the complex of the haloalkane dehalogenase LinB with the product of dehalogenation reaction 1,2-dichloropropane.

Banas, P., Otyepka, M., Jerabek, P., Vevodova, J., Bohac, M., Damborsky, J.

(2007) Appl Environ Microbiol 73: 2005

Released	2006-06-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	HALOGENALKANE DEHALOGENASE (protein)
Unique Ligands	CA, CL, D2P

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2WZR \| pdb_00002wzr	Download File View File

The Structure of Foot and Mouth Disease Virus Serotype SAT1

Adams, P., Lea, S., Newman, J., Blakemore, W., King, A., Stuart, D., Fry, E.

To be published

Released	2010-12-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Foot-and-mouth disease virus SAT 1
Macromolecule	POLYPROTEIN (protein)

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3AAZ \| pdb_00003aaz	Download File View File

Crystal structure of the humanized recombinant Fab fragment of a murine; antibody

Streltsov, V.A.

(2010) Protein Sci 19: 299-308

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Humanized recombinant Fab fragment of a murine; antibody (protein)

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3ALA \| pdb_00003ala	Download File View File

Crystal structure of vascular adhesion protein-1 in space group C2

Ernberg, K.E., McGrath, A.P., Guss, J.M.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1572-1578

Released	2010-12-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Membrane primary amine oxidase (protein)
Unique Ligands	CA, CU, GOL, NAG
Unique branched monosaccharides	BMA, FUC, FUL, NAG

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3AV9 \| pdb_00003av9	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

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3AVA \| pdb_00003ava	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

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3AVB \| pdb_00003avb	Download File View File

Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Peat, T.S., Deadman, J.J., Newman, J., Rhodes, D.I.

(2011) Chembiochem 12: 2311-2315

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Integrase (protein) LEDGF peptide (protein)
Unique Ligands	ACY, CL, SO4

1 to 25 of 298 Structures

Page 1 of 12

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BKB | pdb_00001bkb

1BN6 | pdb_00001bn6

1BN7 | pdb_00001bn7

1CQW | pdb_00001cqw

1CV2 | pdb_00001cv2

1D07 | pdb_00001d07

1FMD | pdb_00001fmd

1FOD | pdb_00001fod

1G42 | pdb_00001g42

1G4H | pdb_00001g4h

1G5F | pdb_00001g5f

1IZ7 | pdb_00001iz7

1IZ8 | pdb_00001iz8

1MJ5 | pdb_00001mj5

1QGC | pdb_00001qgc

1QP8 | pdb_00001qp8

1RBL | pdb_00001rbl

1RSC | pdb_00001rsc

2BFN | pdb_00002bfn

2WZR | pdb_00002wzr

3AAZ | pdb_00003aaz

3ALA | pdb_00003ala

3AV9 | pdb_00003av9

3AVA | pdb_00003ava

3AVB | pdb_00003avb