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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pache, R.A."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Terribacillus saccharophilus (3)
	Trichophaea saccata (2)
	Bifidobacterium bifidum (1)
	Escherichia coli (1)
	Kionochaeta sp. (1)
	Lactiplantibacillus paraplantarum (1)
	Penicillium virgatum (1)
	Staphylococcus aureus (1)
	Thermothielavioides terrestris (1)
	unidentified (1)

Taxonomy

	Bacteria (7)
	Eukaryota (5)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (6)
	2025 - 2029 (4)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

Asymmetric (11)

AllSelected

1 to 11 of 11 Structures

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6OB5 \| pdb_00006ob5	Download File View File

Computationally-designed, modular sense/response system (S3-2D)

Thompson, M.C., Glasgow, A.A., Huang, Y.M., Fraser, J.S., Kortemme, T.

(2019) Science 366: 1024-1028

Released	2019-12-04
Method	X-RAY DIFFRACTION 2.208 Å
Organisms	Escherichia coli unidentified
Macromolecule	Ankyrin Repeat Domain (AR), S3-2D variant (protein) Maltodextrin-binding protein (protein)
Unique Ligands	FPP
Unique branched monosaccharides	GLC

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7NIT \| pdb_00007nit	Download File View File

X-ray structure of a multidomain BbgIII from Bifidobacterium bifidum

Moroz, O.V., Blagova, E., Lebedev, A.A., Sanchez Rodriguez, F., Rigden, D.J., Tams, J.W., Wilting, R., Vester, J.K., Longhin, E., Krogh, K.B.R., Pache, R.A., Davies, G.J., Wilson, K.S.

(2021) Acta Crystallogr D Struct Biol 77: 1564-1578

Released	2021-12-22
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Bifidobacterium bifidum
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	CA, GOL, SO4

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8B2E \| pdb_00008b2e	Download File View File

Muramidase from Kionochaeta sp natural catalytic core

Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.

(2023) Acta Crystallogr D Struct Biol 79: 706-720

Released	2023-07-19
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Kionochaeta sp.
Macromolecule	Muramidase (protein)
Unique Ligands	CD

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8B2F \| pdb_00008b2f	Download File View File

SH3-like cell wall binding domain of the GH24 family muramidase from Trichophaea saccata in complex with triglycine

Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.

(2023) Acta Crystallogr D Struct Biol 79: 706-720

Released	2023-07-19
Method	X-RAY DIFFRACTION 1.183 Å
Organisms	Staphylococcus aureus Trichophaea saccata
Macromolecule	GLY-GLY-GLY (protein) SH3-like cell wall binding domain-containing protein (protein)
Unique Ligands	EDO, ZN

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8B2G \| pdb_00008b2g	Download File View File

SH3-like domain from Penicillium virgatum muramidase

Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.

(2023) Acta Crystallogr D Struct Biol 79: 706-720

Released	2023-07-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Penicillium virgatum
Macromolecule	SH3b domain-containing protein (protein)
Unique Ligands	EDO, ZN

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8B2H \| pdb_00008b2h	Download File View File

Muramidase from Thermothielavioides terrestris, catalytic domain

Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.

(2023) Acta Crystallogr D Struct Biol 79: 706-720

Released	2023-07-19
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Thermothielavioides terrestris
Macromolecule	SH3b domain-containing protein (protein)
Unique Ligands	EDO, ZN

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8B2S \| pdb_00008b2s	Download File View File

GH24 family muramidase from Trichophaea saccata with an SH3-like cell wall binding domain

Moroz, O.V., Blagova, E., Lebedev, A.A., Skov, L.K., Pache, R.A., Schnorr, K.M., Kiemer, L., Nymand-Grarup, S., Ming, L., Ye, L., Klausen, M., Cohn, M.T., Schmidt, E.G.W., Davies, G.J., Wilson, K.S.

(2023) Acta Crystallogr D Struct Biol 79: 706-720

Released	2023-07-19
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Trichophaea saccata
Macromolecule	GH24 family muramidase (protein)
Unique Ligands	K

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8QAK \| pdb_00008qak	Download File View File

Dispersin from Terribacillus saccharophilus DispTs3

Males, A., Moroz, O.V., Blagova, E., Munch, A., Hansen, G.H., Johansen, A.H., Ostergaard, L.H., Segura, D.R., Eddenden, A., Due, A.V., Gudmand, M., Salomon, J., Sorensen, S.R., Cairo, J.L.F., Pache, R.A., Vejborg, R.M., Davies, G.J., Wilson, K.S.

(2025) Acta Crystallogr D Struct Biol 81: 130-146

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Terribacillus saccharophilus
Macromolecule	Glycoside hydrolase family 20 catalytic domain-containing protein (protein)
Unique Ligands	ACT

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8QB6 \| pdb_00008qb6	Download File View File

Dispersin from Terribacillus saccharophilus DispTs2

(2025) Acta Crystallogr D Struct Biol 81: 130-146

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Terribacillus saccharophilus
Macromolecule	Dispersin (protein)
Unique Ligands	GC2, MPD

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8QCE \| pdb_00008qce	Download File View File

Dispersin from Lactiplantibacillus paraplantarum DispLp

(2025) Acta Crystallogr D Struct Biol 81: 130-146

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Lactiplantibacillus paraplantarum
Macromolecule	N-acetyl-beta-hexosaminidase (protein)
Unique Ligands	EDO, GC2, PEG

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9HTA \| pdb_00009hta	Download File View File

Dispersin from Terribacillus saccharophilus Dispts2 in complex with NAG-thiazoline

Males, A., Moroz, O.V., Blagova, E., Munch, A., Hansen, G.H., Johansen, A.H., Ostergaard, L.H., Segura, D.R., Eddenden, A., Due, A.V., Gudmand, M., Salomon, J., Sorensen, S.R., Franco Cairo, J.P.L., Pache, R.A., Vejborg, R.M., Bhosale, S., Vocadlo, D., Davies, G.J., Wilson, K.S.

(2025) Acta Crystallogr D Struct Biol 81: 130-146

Released	2025-03-12
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Terribacillus saccharophilus
Macromolecule	Dispersin (protein)
Unique Ligands	NGT

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6OB5 | pdb_00006ob5

Computationally-designed, modular sense/response system (S3-2D)

7NIT | pdb_00007nit

X-ray structure of a multidomain BbgIII from Bifidobacterium bifidum

8B2E | pdb_00008b2e

Muramidase from Kionochaeta sp natural catalytic core

8B2F | pdb_00008b2f

SH3-like cell wall binding domain of the GH24 family muramidase from Trichophaea saccata in complex with triglycine

8B2G | pdb_00008b2g

SH3-like domain from Penicillium virgatum muramidase

8B2H | pdb_00008b2h

Muramidase from Thermothielavioides terrestris, catalytic domain

8B2S | pdb_00008b2s

GH24 family muramidase from Trichophaea saccata with an SH3-like cell wall binding domain

8QAK | pdb_00008qak

Dispersin from Terribacillus saccharophilus DispTs3

8QB6 | pdb_00008qb6

Dispersin from Terribacillus saccharophilus DispTs2

8QCE | pdb_00008qce

Dispersin from Lactiplantibacillus paraplantarum DispLp

9HTA | pdb_00009hta

Dispersin from Terribacillus saccharophilus Dispts2 in complex with NAG-thiazoline

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6OB5 | pdb_00006ob5

7NIT | pdb_00007nit

8B2E | pdb_00008b2e

8B2F | pdb_00008b2f

8B2G | pdb_00008b2g

8B2H | pdb_00008b2h

8B2S | pdb_00008b2s

8QAK | pdb_00008qak

8QB6 | pdb_00008qb6

8QCE | pdb_00008qce

9HTA | pdb_00009hta