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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Perrakis, A."

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Search Summary

This query matches 143 Structures.

Refinements

Structure Determination Methodology

experimental (143)

Scientific Name of Source Organism

	Homo sapiens (39)
	Escherichia coli (18)
	Rattus norvegicus (16)
	Serratia marcescens (11)
	Mus musculus (10)
	Mycobacterium tuberculosis (7)
	Influenza A virus (5)
	Respirovirus muris (5)
	synthetic construct (4)
	Aplysia californica (3)

More...

Taxonomy

	Eukaryota (85)
	Bacteria (46)
	Riboviria (23)
	Duplodnaviria (4)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (140)
	SOLUTION NMR (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (143)
	DNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (52)
	2.0 - 2.5 (49)
	2.5 - 3.0 (22)
	3.0 - 3.5 (9)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (19)
	2000 - 2004 (26)
	2005 - 2009 (17)
	2010 - 2014 (17)
	2015 - 2019 (25)
	2020 - 2024 (38)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (53)
	Transferases (21)
	Lyases (8)
	Oxidoreductases (8)
	Ligases (3)
	Translocases (1)

Symmetry Type

	Asymmetric (101)
	Cyclic (33)
	Dihedral (13)

SCOP Classification

	Alpha and beta proteins (a+b) (41)
	All alpha proteins (15)
	All beta proteins (33)
	Alpha and beta proteins (a/b) (20)
	Artifacts (16)
	Multi-domain proteins (alpha and beta) (4)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 143 Structures

Page 1 of 6

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1C7S \| pdb_00001c7s	Download File View File

BETA-N-ACETYLHEXOSAMINIDASE MUTANT D539A COMPLEXED WITH DI-N-ACETYL-BETA-D-GLUCOSAMINE (CHITOBIASE)

Prag, G., Papanikolau, Y., Tavlas, G., Vorgias, C.E., Petratos, K., Oppenheim, A.B.

(2000) J Mol Biology 300: 611-617

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Serratia marcescens
Macromolecule	BETA-N-ACETYLHEXOSAMINIDASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	NAG

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1C7T \| pdb_00001c7t	Download File View File

BETA-N-ACETYLHEXOSAMINIDASE MUTANT E540D COMPLEXED WITH DI-N ACETYL-D-GLUCOSAMINE (CHITOBIASE)

Prag, G., Papanikolau, Y., Tavlas, G., Vorgias, C.E., Petratos, K., Oppenheim, A.B.

(2000) J Mol Biology 300: 611-617

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Serratia marcescens
Macromolecule	BETA-N-ACETYLHEXOSAMINIDASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	NAG

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1CJP \| pdb_00001cjp	Download File View File

CONCANAVALIN A COMPLEX WITH 4'-METHYLUMBELLIFERYL-ALPHA-D-GLUCOPYRANOSIDE

Hamodrakas, S.J., Kanellopoulos, P.N., Tucker, P.A.

(1997) J Struct Biol 118: 23-30

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Canavalia ensiformis
Macromolecule	CONCANAVALIN A (protein)
Unique Ligands	CA, MN, MUG

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1CTN \| pdb_00001ctn	Download File View File

CRYSTAL STRUCTURE OF A BACTERIAL CHITINASE AT 2.3 ANGSTROMS RESOLUTION

Perrakis, A., Tews, I., Dauter, Z., Wilson, K.S., Vorgias, C.E.

(1994) Structure 2: 1169-1180

Released	1995-02-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)

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1DCS \| pdb_00001dcs	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE FROM S. CLAVULIGERUS

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	SO4

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1DEK \| pdb_00001dek	Download File View File

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP

Teplyakov, A., Sebastiao, P.

(1996) EMBO J 15: 3487-3497

Released	1997-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE (protein)
Unique Ligands	DGP, MG

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1DEL \| pdb_00001del	Download File View File

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP AND AMP

Teplyakov, A., Sebastiao, P.

(1996) EMBO J 15: 3487-3497

Released	1997-01-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tequatrovirus T4
Macromolecule	DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE (protein)
Unique Ligands	AMP, DGP, MG

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1DW9 \| pdb_00001dw9	Download File View File

Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site

Walsh, M.A., Otwinowski, Z., Perrakis, A., Anderson, P.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2000) Structure 8: 505

Released	2000-05-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	CYANATE LYASE (protein)
Unique Ligands	CL, SO4

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1DWK \| pdb_00001dwk	Download File View File

STRUCTURE OF CYANASE WITH THE DI-ANION OXALATE BOUND AT THE ENZYME ACTIVE SITE

Walsh, M.A., Otwinowski, Z., Perrakis, A., Anderson, P.M., Joachimiak, A.

(2000) Structure 8: 505

Released	2000-05-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	CYANATE HYDRATASE (protein)
Unique Ligands	OXL, SO4

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1E3M \| pdb_00001e3m	Download File View File

The crystal structure of E. coli MutS binding to DNA with a G:T mismatch

Lamers, M.H., Perrakis, A., Enzlin, J.H., Winterwerp, H.H.K., De Wind, N., Sixma, T.K.

(2000) Nature 407: 711

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	DNA MISMATCH REPAIR PROTEIN MUTS (protein) 5'-D(APGPCPTPGPCPCPAPGPGPCPAPCPCPAP GPTPGPTPCPAPGPCPGPTPCPCPTPAPT)-3' (nucleic acid) 5'-D(APTPAPGPGPAPCPGPCPTPGPAPCPAPCP TPGPGPTPGPCPTPTPGPGPCPAPGPCPT)-3' (nucleic acid)
Unique Ligands	ADP, MG

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1EDQ \| pdb_00001edq	Download File View File

CRYSTAL STRUCTURE OF CHITINASE A FROM S. MARCESCENS AT 1.55 ANGSTROMS

Papanikolau, Y., Petratos, K.

(2003) Acta Crystallogr D Biol Crystallogr 59: 400-403

Released	2000-02-18
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)

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1EHN \| pdb_00001ehn	Download File View File

CRYSTAL STRUCTURE OF CHITINASE A MUTANT E315Q COMPLEXED WITH OCTA-N-ACETYLCHITOOCTAOSE (NAG)8.

Papanikolau, Y., Prag, G., Tavlas, G., Vorgias, C.E., Oppenheim, A.B., Petratos, K.

(2001) Biochemistry 40: 11338-11343

Released	2001-02-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)
Unique branched monosaccharides	NAG

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1EIB \| pdb_00001eib	Download File View File

CRYSTAL STRUCTURE OF CHITINASE A MUTANT D313A COMPLEXED WITH OCTA-N-ACETYLCHITOOCTAOSE (NAG)8.

Papanikolau, Y., Prag, G., Tavlas, G., Vorgias, C.E., Oppenheim, A.B., Petratos, K.

(2001) Biochemistry 40: 11338-11343

Released	2001-02-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)
Unique branched monosaccharides	NAG

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1EJC \| pdb_00001ejc	Download File View File

Crystal structure of unliganded mura (type2)

Eschenburg, S., Schonbrunn, E.

(2000) Proteins 40: 290-298

Released	2000-10-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterobacter cloacae
Macromolecule	UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFERASE (protein)
Unique Ligands	GOL, PO4

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1EJD \| pdb_00001ejd	Download File View File

Crystal structure of unliganded mura (type1)

Eschenburg, S., Schonbrunn, E.

(2000) Proteins 40: 290-298

Released	2000-10-25
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Enterobacter cloacae
Macromolecule	UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFERASE (protein)
Unique Ligands	HAI, PO4

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1EPU \| pdb_00001epu	Download File View File

X-RAY crystal structure of neuronal SEC1 from squid

Bracher, A., Perrakis, A., Dresbach, T., Betz, H., Weissenhorn, W.

(2000) Structure 8: 685-694

Released	2000-08-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Doryteuthis pealeii
Macromolecule	S-SEC1 (protein)

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1FFQ \| pdb_00001ffq	Download File View File

CRYSTAL STRUCTURE OF CHITINASE A COMPLEXED WITH ALLOSAMIDIN

Papanikolau, Y., Tavlas, G., Vorgias, C.E., Petratos, K.

(2003) Acta Crystallogr D Biol Crystallogr 59: 400-403

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)
Unique Ligands	AMI
Unique branched monosaccharides	NAA

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1FFR \| pdb_00001ffr	Download File View File

CRYSTAL STRUCTURE OF CHITINASE A MUTANT Y390F COMPLEXED WITH HEXA-N-ACETYLCHITOHEXAOSE (NAG)6

Papanikolau, Y., Prag, G., Tavlas, G., Vorgias, C.E., Oppenheim, A.B., Petratos, K.

(2001) Biochemistry 40: 11338-11343

Released	2001-09-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)
Unique branched monosaccharides	NAG

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1FVF \| pdb_00001fvf	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF NEURONAL SEC1 FROM THE SQUID L. PEALEI

Bracher, A., Weissenhorn, W.

(2001) J Mol Biology 306: 7-13

Released	2001-01-31
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Doryteuthis pealeii
Macromolecule	SEC1 (protein)

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1FVH \| pdb_00001fvh	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF NEURONAL SEC1 FROM THE SQUID L. PEALEI

Bracher, A., Weissenhorn, W.

(2001) J Mol Biology 306: 7-13

Released	2001-01-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Doryteuthis pealeii
Macromolecule	SEC1 (protein)

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1K9T \| pdb_00001k9t	Download File View File

Chitinase a complexed with tetra-N-acetylchitotriose

Prag, G., Tucker, P.A., Oppenheim, A.B.

To be published

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Serratia marcescens
Macromolecule	CHITINASE A (protein)
Unique branched monosaccharides	NAG

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1LTM \| pdb_00001ltm	Download File View File

ACCELERATED X-RAY STRUCTURE ELUCIDATION OF A 36 KDA MURAMIDASE/TRANSGLYCOSYLASE USING WARP

Van Asselt, E.J., Dijkstra, B.W.

(1998) Acta Crystallogr D Biol Crystallogr 54: 58-73

Released	1998-11-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	36 KDA SOLUBLE LYTIC TRANSGLYCOSYLASE (protein)
Unique Ligands	BCN, EDO, NA

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1MQS \| pdb_00001mqs	Download File View File

Crystal structure of Sly1p in complex with an N-terminal peptide of Sed5p

Bracher, A., Weissenhorn, W.

(2002) EMBO J 21: 6114-6124

Released	2002-11-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Integral Membrane Protein SED5 (protein) Sly1 Protein (protein)

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1NAW \| pdb_00001naw	Download File View File

ENOLPYRUVYL TRANSFERASE

Schoenbrunn, E., Sack, S., Eschenburg, S., Perrakis, A., Krekel, F., Amrhein, N., Mandelkow, E.

(1996) Structure 4: 1065-1075

Released	1997-07-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterobacter cloacae
Macromolecule	UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYL-TRANSFERASE (protein)
Unique Ligands	HAI

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1O9K \| pdb_00001o9k	Download File View File

Crystal structure of the retinoblastoma tumour suppressor protein bound to E2F peptide

Xiao, B., Spencer, J., Clements, A., Ali-Khan, N., Mittnacht, S., Broceno, C., Burghammer, M., Perrakis, A., Marmorstein, R., Gamblin, S.J.

(2003) Proc Natl Acad Sci U S A 100: 2363

Released	2003-03-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	RETINOBLASTOMA-ASSOCIATED PROTEIN (protein) TRANSCRIPTION FACTOR E2F1 (protein)

1 to 25 of 143 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1C7S | pdb_00001c7s

1C7T | pdb_00001c7t

1CJP | pdb_00001cjp

1CTN | pdb_00001ctn

1DCS | pdb_00001dcs

1DEK | pdb_00001dek

1DEL | pdb_00001del

1DW9 | pdb_00001dw9

1DWK | pdb_00001dwk

1E3M | pdb_00001e3m

1EDQ | pdb_00001edq

1EHN | pdb_00001ehn

1EIB | pdb_00001eib

1EJC | pdb_00001ejc

1EJD | pdb_00001ejd

1EPU | pdb_00001epu

1FFQ | pdb_00001ffq

1FFR | pdb_00001ffr

1FVF | pdb_00001fvf

1FVH | pdb_00001fvh

1K9T | pdb_00001k9t

1LTM | pdb_00001ltm

1MQS | pdb_00001mqs

1NAW | pdb_00001naw

1O9K | pdb_00001o9k