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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Perry, A.J."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Escherichia coli (6)
	Oryctolagus cuniculus (6)
	Hyphochytrium catenoides (3)
	Thermus thermophilus (3)
	Thermus thermophilus HB8 (3)
	Dokdonia eikasta (2)
	Pyrococcus horikoshii (2)
	Saccharomyces cerevisiae (2)
	Aspergillus luchuensis (1)
	Bdellovibrio (1)

More...

Taxonomy

	Bacteria (19)
	Eukaryota (15)
	Archaea (5)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (33)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (39)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (18)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (11)
	2000 - 2004 (6)
	2005 - 2009 (7)
	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (10)
	2025 - 2029 (1)

Enzyme Classification Name

	Isomerases (12)
	Ligases (9)
	Hydrolases (2)
	Transferases (2)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (8)
	OPM (7)
	mpstruc (5)
	MemProtMD (4)

Symmetry Type

	Asymmetric (26)
	Cyclic (15)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	Alpha and beta proteins (a+b) (7)
	All beta proteins (8)
	All alpha proteins (8)
	Membrane and cell surface proteins and peptides (2)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (1)

AllSelected

1 to 25 of 39 Structures

Page 1 of 2

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1A8H \| pdb_00001a8h	Download File View File

METHIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Sugiura, I., Nureki, O., Ugaji, Y., Kuwabara, S., Lober, B., Giege, R., Moras, D., Yokoyama, S., Konno, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) Structure 8: 197-208

Released	1999-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	METHIONYL-TRNA SYNTHETASE (protein)
Unique Ligands	ZN

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1BK1 \| pdb_00001bk1	Download File View File

ENDO-1,4-BETA-XYLANASE C

Fushinobu, S., Ito, K., Konno, M., Wakagi, T., Matsuzawa, H.

(1998) Protein Eng 11: 1121-1128

Released	1999-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aspergillus luchuensis
Macromolecule	ENDO-1,4-B-XYLANASE C (protein)

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1BZA \| pdb_00001bza	Download File View File

BETA-LACTAMASE TOHO-1 FROM ESCHERICHIA COLI TUH12191

Ibuka, A., Taguchi, A., Ishiguro, M., Fushinobu, S., Ishii, Y., Kamitori, S., Okuyama, K., Yamaguchi, K., Konno, M., Matsuzawa, H.

(1999) J Mol Biology 285: 2079-2087

Released	1999-04-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	SO4

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1C47 \| pdb_00001c47	Download File View File

BINDING DRIVEN STRUCTURAL CHANGES IN CRYSTALINE PHOSPHOGLUCOMUTASE ASSOCIATED WITH CHEMICAL REACTION

Baranidharan, S., Ray Jr., W.J.

To be published

Released	1999-08-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE PHOSPHOTRANSFERASE (protein)
Unique Ligands	CD, G16

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1C4G \| pdb_00001c4g	Download File View File

PHOSPHOGLUCOMUTASE VANADATE BASED TRANSITION STATE ANALOG COMPLEX

Baranidharan, S., Ray Jr., W.J.

To be published

Released	1999-08-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (ALPHA-D-GLUCOSE 1-PHOSPHATE PHOSPHOGLUCOMUTASE) (protein)
Unique Ligands	CO, VG1

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1EZ4 \| pdb_00001ez4	Download File View File

CRYSTAL STRUCTURE OF NON-ALLOSTERIC L-LACTATE DEHYDROGENASE FROM LACTOBACILLUS PENTOSUS AT 2.3 ANGSTROM RESOLUTION

Uchikoba, H., Fushinobu, S., Wakagi, T., Konno, M., Taguchi, H., Matsuzawa, H.

(2002) Proteins 46: 206-214

Released	2001-12-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactiplantibacillus pentosus
Macromolecule	LACTATE DEHYDROGENASE (protein)
Unique Ligands	NAD

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1ILE \| pdb_00001ile	Download File View File

ISOLEUCYL-TRNA SYNTHETASE

Nureki, O., Vassylyev, D.G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Schimmel, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1998) Science 280: 578-582

Released	1999-04-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ISOLEUCYL-TRNA SYNTHETASE (protein)
Unique Ligands	ZN

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1IST \| pdb_00001ist	Download File View File

Crystal structure of yeast cyclophilin A, CPR1

Konno, M., Kashima, A., Yoshikawa-Fujioka, S.

To be published

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cyclophilin A (protein)

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1J2A \| pdb_00001j2a	Download File View File

Structure of E. coli cyclophilin B K163T mutant

Konno, M., Sano, Y., Okudaira, K., Kawaguchi, Y., Yamagishi-Ohmori, Y., Fushinobu, S., Matsuzawa, H.

(2004) Eur J Biochem 271: 3794-3803

Released	2004-02-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	cyclophilin B (protein)

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1JDY \| pdb_00001jdy	Download File View File

RABBIT MUSCLE PHOSPHOGLUCOMUTASE

Ray Junior, W.J., Baranidharan, S., Liu, Y.

To be published

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PHOSPHOGLUCOMUTASE (protein)
Unique Ligands	CD, SO4

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1LOP \| pdb_00001lop	Download File View File

CYCLOPHILIN A COMPLEXED WITH SUCCINYL-ALA-PRO-ALA-P-NITROANILIDE

Konno, M.

(1996) J Mol Biology 256: 897-908

Released	1996-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	CYCLOPHILIN A (protein) SUCCINYL-ALA-PRO-ALA-P-NITROANILIDE (protein)

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1LXT \| pdb_00001lxt	Download File View File

STRUCTURE OF PHOSPHOTRANSFERASE PHOSPHOGLUCOMUTASE FROM RABBIT

Ray Junior, W.J., Baranidharan, S., Liu, Y.

(1997) Acta Crystallogr D Biol Crystallogr 53: 392-405

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PHOSPHOGLUCOMUTASE (DEPHOSPHO FORM) (protein)
Unique Ligands	CD, SO4

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1QQT \| pdb_00001qqt	Download File View File

METHIONYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI

Mechulam, Y., Schmitt, E., Maveyraud, L., Zelwer, C., Nureki, O., Yokoyama, S., Konno, M., Blanquet, S.

(1999) J Mol Biology 294: 1287-1297

Released	2000-01-01
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Escherichia coli
Macromolecule	METHIONYL-TRNA SYNTHETASE (protein)
Unique Ligands	ZN

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1V9T \| pdb_00001v9t	Download File View File

Structure of E. coli cyclophilin B K163T mutant bound to succinyl-ALA-PRO-ALA-P-nitroanilide

Konno, M., Sano, Y., Okudaira, K., Kawaguchi, Y., Yamagishi-Ohmori, Y., Fushinobu, S., Matsuzawa, H.

(2004) Eur J Biochem 271: 3794-3803

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	(SIN)APA(NIT) (protein) cyclophilin B (protein)

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1VAI \| pdb_00001vai	Download File View File

Structure of e. coli cyclophilin B K163T mutant bound to n-acetyl-ala-ala-pro-ala-7-amino-4-methylcoumarin

Konno, M., Sano, Y., Okudaira, K., Kawaguchi, Y., Yamagishi-Ohmori, Y., Fushinobu, S., Matsuzawa, H.

(2004) Eur J Biochem 271: 3794-3803

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	(ACE)AAPA(MCM) (protein) cyclophilin B (protein)

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1VDN \| pdb_00001vdn	Download File View File

Crystal Structure Of Yeast Cyclophilin A Complexed With ACE-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin

Konno, M., Shibano, T., Okudaira, K., Takahashi, N.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	(ACE)AAPA(MCM) (protein) Cyclophilin A (protein)

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1VKL \| pdb_00001vkl	Download File View File

RABBIT MUSCLE PHOSPHOGLUCOMUTASE

Ray Junior, W.J., Baranidharan, S., Liu, Y.

(1993) Biochemistry 32: 48-57

Released	1997-01-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PHOSPHOGLUCOMUTASE (protein)
Unique Ligands	NI

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1WOY \| pdb_00001woy	Download File View File

Crystal structure of methionyl tRNA synthetase Y225F mutant from Thermus thermophilus

Konno, M., Takeda, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-09-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	Methionyl-tRNA synthetase (protein)
Unique Ligands	ZN

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2D54 \| pdb_00002d54	Download File View File

Crystal Structure of Methionyl tRNA Synthetase Y225A Mutant from Thermus Thermophilus

Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-12-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	Methionyl-tRNA synthetase (protein)
Unique Ligands	ZN

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2D5B \| pdb_00002d5b	Download File View File

Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000

Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-11-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus
Macromolecule	Methionyl-tRNA Synthetase (protein)
Unique Ligands	ZN

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2ZOC \| pdb_00002zoc	Download File View File

Crystal structure of recombinant human annexin IV

Konno, M., Kaneko-Kanzaki, Y., Fushinobu-Okushi, N., Mochizuki, K., Uchikaw, E., Satoh, A., Aikawa, K.

To be published

Released	2009-04-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Annexin A4 (protein)
Unique Ligands	CA

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2ZUE \| pdb_00002zue	Download File View File

Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg) and an ATP analog (ANP)

Konno, M., Sumida, T., Uchikawa, E., Mori, Y., Yanagisawa, T., Sekine, S., Yokoyama, S.

(2009) FEBS J 276: 4763-4779

Released	2009-08-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Arginyl-tRNA synthetase (protein) tRNA-Arg (nucleic acid)
Unique Ligands	ANP, MG

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2ZUF \| pdb_00002zuf	Download File View File

Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg)

Konno, M., Sumida, T., Uchikawa, E., Mori, Y., Yanagisawa, T., Sekine, S., Yokoyama, S.

(2009) FEBS J 276: 4763-4779

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii synthetic construct
Macromolecule	Arginyl-tRNA synthetase (protein) tRNA-Arg (nucleic acid)