RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Serpersu, E.H."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Enterobacter cloacae (13)
	Pseudomonas aeruginosa (6)
	Bacillus sp. (in: firmicutes) (4)
	Enterobacteriaceae (3)
	Geobacillus stearothermophilus (3)
	Enterococcus casseliflavus (2)
	Homo sapiens (1)
	Staphylococcus aureus (1)

Taxonomy

	Bacteria (32)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (32)
	NEUTRON DIFFRACTION (4)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (8)
	2.0 - 2.5 (18)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2015 - 2019 (24)
	2020 - 2024 (8)

Enzyme Classification Name

Transferases (30)

Symmetry Type

	Asymmetric (19)
	Cyclic (14)

SCOP Classification

	All alpha proteins (8)
	Alpha and beta proteins (a+b) (8)
	Alpha and beta proteins (a/b) (13)
	Small proteins (1)

AllSelected

1 to 25 of 33 Structures

Page 1 of 2

Sort by

Explore in 3D

1S4G \| pdb_00001s4g	Download File View File

Somatomedin-B Domain of human plasma vitronectin.

Mayasundari, A., Whittemore, N.A., Serpersu, E.H., Peterson, C.B.

(2004) J Biological Chem 279: 29359-29366

Released	2004-06-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Vitronectin (protein)

Explore in 3D

5C4K \| pdb_00005c4k	Download File View File

APH(2")-IVa in complex with GET (G418) at room temperature

Kaplan, E., Guichou, J.F., Berrou, K., Chaloin, L., Leban, N., Lallemand, P., Barman, T., Serpersu, E.H., Lionne, C.

(2016) Biochim Biophys Acta 1860: 802-813

Released	2016-02-03
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Enterococcus casseliflavus
Macromolecule	APH(2'')-Id (protein)
Unique Ligands	GET

Explore in 3D

5C4L \| pdb_00005c4l	Download File View File

Conformational alternate of sisomicin in complex with APH(2")-IVa

Kaplan, E., Guichou, J.F., Berrou, K., Chaloin, L., Leban, N., Lallemand, P., Barman, T., Serpersu, E.H., Lionne, C.

(2016) Biochim Biophys Acta 1860: 802-813

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Enterococcus casseliflavus
Macromolecule	APH(2'')-Id (protein)
Unique Ligands	4XR, SIS

Explore in 3D

6BBR \| pdb_00006bbr	Download File View File

Room temperature neutron/X-ray structure of AAC-VIa

Cuneo, M.J., Kumar, P., Serpersu, E.H.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.002 Å NEUTRON DIFFRACTION 2.3 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	MG

Explore in 3D

6BBZ \| pdb_00006bbz	Download File View File

Room temperature neutron/X-ray structure of sisomicin bound AAC-VIa

Cuneo, M.J., Kumar, P.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.9 Å NEUTRON DIFFRACTION 2.2 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	MG, SIS

Explore in 3D

6BC2 \| pdb_00006bc2	Download File View File

Cryo X-ray structure of acetylsisomicin bound AAC-VIa

Cuneo, M.J., Kumar, P., Serpersu, E.H.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.195 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	DVM, MG

Explore in 3D

6BC3 \| pdb_00006bc3	Download File View File

Cryo X-ray structure of sisomicin bound AAC-VIa

Cuneo, M.J., Kumar, P., Serpersu, E.H.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.047 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	COA, SIS

Explore in 3D

6BC4 \| pdb_00006bc4	Download File View File

Cryo X-ray structure of acetyl coenzyme A bound AAC-VIa

Cuneo, M.J., Kumar, P., Serpersu, E.H.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.049 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	ACO

Explore in 3D

6BC5 \| pdb_00006bc5	Download File View File

Cryo X-ray structure of coenzyme A bound AAC-VIa

Cuneo, M.J., Kumar, P., Serpersu, E.H.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	COA

Explore in 3D

6BC6 \| pdb_00006bc6	Download File View File

Cryo X-ray structure of apo AAC-VIa

Cuneo, M.J., Kumar, P.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	MG

Explore in 3D

6BC7 \| pdb_00006bc7	Download File View File

Cryo X-ray structure of sisomicin bound AAC-VIa

Cuneo, M.J., Kumar, P.

(2018) Sci Adv 4: eaas8667-eaas8667

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterobacter cloacae
Macromolecule	AAC 3-VI protein (protein)
Unique Ligands	ACT, SIS

Explore in 3D

6MB4 \| pdb_00006mb4	Download File View File

Binary (sisomicin) structure of AAC-IIIb

Cuneo, M.J., Kumar, P.

(2018) J Med Chem 61: 10218-10227

Released	2018-11-07
Method	X-RAY DIFFRACTION 2.302 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Aac(3)-IIIb protein (protein)
Unique Ligands	SIS

Explore in 3D

6MB5 \| pdb_00006mb5	Download File View File

AAC-IIIb binary with NEOMYCIN

Cuneo, M.J., Kumar, P.

(2018) J Med Chem 61: 10218-10227

Released	2018-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Aac(3)-IIIb protein (protein)
Unique Ligands	NMY

Explore in 3D

6MB6 \| pdb_00006mb6	Download File View File

AAC-IIIb binary with CoASH

Cuneo, M.J., Kumar, P.

(2018) J Med Chem 61: 10218-10227

Released	2018-11-07
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Aac(3)-IIIb protein (protein)
Unique Ligands	COA, MLI

Explore in 3D

6MB7 \| pdb_00006mb7	Download File View File

Binary (paromomycin) structure of AAC-IIIb

Cuneo, M.J., Kumar, P.

(2018) J Med Chem 61: 10218-10227

Released	2018-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Aac(3)-IIIb protein (protein)
Unique Ligands	PAR

Explore in 3D

6MB8 \| pdb_00006mb8	Download File View File

Apo structure of AAC-IIIb

Cuneo, M.J., Kumar, P.

(2018) J Med Chem 61: 10218-10227

Released	2018-11-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Aac(3)-IIIb protein (protein)
Unique Ligands	CL

Explore in 3D

6MB9 \| pdb_00006mb9	Download File View File

Ternary (neomycin/CoA) structure of AAC-IIIb

Cuneo, M.J., Kumar, P.

(2018) J Med Chem 61: 10218-10227

Released	2018-11-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Aac(3)-IIIb protein (protein)
Unique Ligands	2PE, COA, NMY

Explore in 3D

6NMK \| pdb_00006nmk	Download File View File

Binary complex structure of the T130K mutant of ANT-4'' with Neomycin

Cuneo, M.J., Selvaraj, B.

(2020) ACS Catal

Released	2020-01-15
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Kanamycin nucleotidyltransferase (protein)
Unique Ligands	CA, MG, NMY

Explore in 3D

6NML \| pdb_00006nml	Download File View File

Ternary structure of the T130K mutant of ANT-4'' with Neomycin and AMPCPP

Cuneo, M.J., Selvaraj, B.

(2020) ACS Catal

Released	2020-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Kanamycin nucleotidyltransferase (protein)
Unique Ligands	APC, MG, NMY

Explore in 3D

6NMM \| pdb_00006nmm	Download File View File

Ternary complex structure of the T130K mutant of ANT-4 with Neomycin, AMPCPP and Pyrophosphate

Cuneo, M.J., Selvaraj, B.

(2020) ACS Catal

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Kanamycin nucleotidyltransferase (protein)
Unique Ligands	AMP, MG, NMY, PPV

Explore in 3D

6NP1 \| pdb_00006np1	Download File View File

Product state mimicry leads to aminoglycoside discrimination in an antibiotic acetyltransferase

Kumar, P., Cuneo, M.J.

(2019) Angew Chem Int Ed Engl 58: 16260-16266

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Enterobacter cloacae
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	MG

Explore in 3D

6NP2 \| pdb_00006np2	Download File View File

AAC-VIa bound to Sisomicin

Kumar, P., Cuneo, M.J.

(2019) Angew Chem Int Ed Engl 58: 16260-16266

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Enterobacter cloacae
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	MG, SIS

Explore in 3D

6NP3 \| pdb_00006np3	Download File View File

AAC-VIa bound to Gentamicin

Kumar, P., Cuneo, M.J.

(2019) Angew Chem Int Ed Engl 58: 16260-16266

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Enterobacter cloacae
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	LLL, MG

Explore in 3D

6NP4 \| pdb_00006np4	Download File View File

AAC-VIa bound to Tobramycin

Kumar, P., Cuneo, M.J.

(2019) Angew Chem Int Ed Engl 58: 16260-16266

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.151 Å
Organisms	Enterobacter cloacae
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	MG, TOY

Explore in 3D

6NP5 \| pdb_00006np5	Download File View File

AAC-VIa bound to Kanamycin B

Kumar, P., Cuneo, M.J.

(2019) Angew Chem Int Ed Engl 58: 16260-16266

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.353 Å
Organisms	Enterobacter cloacae
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	9CS, MG

1 to 25 of 33 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1S4G | pdb_00001s4g

5C4K | pdb_00005c4k

5C4L | pdb_00005c4l

6BBR | pdb_00006bbr

6BBZ | pdb_00006bbz

6BC2 | pdb_00006bc2

6BC3 | pdb_00006bc3

6BC4 | pdb_00006bc4

6BC5 | pdb_00006bc5

6BC6 | pdb_00006bc6

6BC7 | pdb_00006bc7

6MB4 | pdb_00006mb4

6MB5 | pdb_00006mb5

6MB6 | pdb_00006mb6

6MB7 | pdb_00006mb7

6MB8 | pdb_00006mb8

6MB9 | pdb_00006mb9

6NMK | pdb_00006nmk

6NML | pdb_00006nml

6NMM | pdb_00006nmm

6NP1 | pdb_00006np1

6NP2 | pdb_00006np2

6NP3 | pdb_00006np3

6NP4 | pdb_00006np4

6NP5 | pdb_00006np5