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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sorigue, D."

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Search Summary

This query matches 316 Structures.

Refinements

Structure Determination Methodology

experimental (316)

Scientific Name of Source Organism

	synthetic construct (198)
	Homo sapiens (100)
	Geobacillus stearothermophilus (31)
	Bos taurus (28)
	Escherichia coli (14)
	Mus musculus (14)
	Rattus norvegicus (14)
	Lama glama (6)
	Rattus (2)
	Severe acute respiratory syndrome coronavirus 2 (2)

More...

Taxonomy

	other sequences (198)
	Eukaryota (114)
	Bacteria (46)
	Riboviria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (232)
	ELECTRON MICROSCOPY (84)

Polymer Entity Type

	DNA (196)
	Protein (150)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (28)
	2.0 - 2.5 (38)
	2.5 - 3.0 (49)
	3.0 - 3.5 (47)
	3.5 - 4.0 (28)
	4.0 - 4.5 (40)
	> 4.5 (84)

Release Date

	1995 - 1999 (16)
	2000 - 2004 (30)
	2005 - 2009 (8)
	2010 - 2014 (10)
	2015 - 2019 (7)
	2020 - 2024 (241)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (83)
	Transferases (63)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (81)
	mpstruc (68)
	OPM (61)
	MemProtMD (46)

Symmetry Type

	Asymmetric (129)
	Cyclic (24)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (52)
	Multi-domain proteins (alpha and beta) (32)
	All beta proteins (8)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (5)

AllSelected

1 to 25 of 316 Structures

Page 1 of 13

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1A9O \| pdb_00001a9o	Download File View File

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH PHOSPHATE

Mao, C., Cook, W.J., Zhou, M., Fedorov, A.A., Almo, S.C., Ealick, S.E.

(1998) Biochemistry 37: 7135-7146

Released	1998-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	PO4

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1A9P \| pdb_00001a9p	Download File View File

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE

Mao, C., Cook, W.J., Zhou, M., Fedorov, A.A., Almo, S.C., Ealick, S.E.

(1998) Biochemistry 37: 7135-7146

Released	1998-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	9DI, PO4

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1A9Q \| pdb_00001a9q	Download File View File

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH INOSINE

Mao, C., Cook, W.J., Zhou, M., Fedorov, A.A., Almo, S.C., Ealick, S.E.

(1998) Biochemistry 37: 7135-7146

Released	1998-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	HPA, SO4

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1A9R \| pdb_00001a9r	Download File View File

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH HYPOXANTHINE AND SULFATE

Mao, C., Cook, W.J., Zhou, M., Fedorov, A.A., Almo, S.C., Ealick, S.E.

(1998) Biochemistry 37: 7135-7146

Released	1998-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	HPA, SO4

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1A9S \| pdb_00001a9s	Download File View File

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH INOSINE AND SULFATE

Mao, C., Cook, W.J., Zhou, M., Fedorov, A.A., Almo, S.C., Ealick, S.E.

(1998) Biochemistry 37: 7135-7146

Released	1998-07-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	NOS, SO4

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1A9T \| pdb_00001a9t	Download File View File

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE

Mao, C., Cook, W.J., Zhou, M., Fedorov, A.A., Almo, S.C., Ealick, S.E.

(1998) Biochemistry 37: 7135-7146

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	HPA, R1P

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1B8N \| pdb_00001b8n	Download File View File

PURINE NUCLEOSIDE PHOSPHORYLASE

Fedorov, A.A., Kicska, G.A., Fedorov, E.V., Strokopytov, B.V., Tyler, P.C., Furneaux, R.H., Schramm, V.L., Almo, S.C.

(2002) Biochemistry 41: 14489-14498

Released	1999-02-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	IMG, MG, PO4

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1B8O \| pdb_00001b8o	Download File View File

PURINE NUCLEOSIDE PHOSPHORYLASE

Fedorov, A.A., Kicska, G.A., Fedorov, E.V., Shi, W., Tyler, P.C., Furneaux, R.H., Schramm, V.L., Almo, S.C.

(2001) Biochemistry 40: 853-860

Released	1999-02-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	IMH, MG, PO4

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1ECP \| pdb_00001ecp	Download File View File

PURINE NUCLEOSIDE PHOSPHORYLASE

Mao, C., Ealick, S.E.

(1997) Structure 5: 1373-1383

Released	1996-06-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)

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1K2P \| pdb_00001k2p	Download File View File

Crystal structure of Bruton's tyrosine kinase domain

Mao, C., Zhou, M., Uckun, F.M.

(2001) J Biological Chem 276: 41435-41443

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)

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1K3F \| pdb_00001k3f	Download File View File

Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice

Morgunova, E.Yu., Mikhailov, A.M., Popov, A.N., Blagova, E.V., Smirnova, E.A., Vainshtein, B.K., Mao, C., Armstrong, S.R., Ealick, S.E., Komissarov, A.A., Linkova, E.V., Burlakova, A.A., Mironov, A.S., Debabov, V.G.

(1995) FEBS Lett 367: 183-187

Released	2001-10-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	uridine phosphorylase (protein)

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1L3S \| pdb_00001l3s	Download File View File

Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA.

Johnson, S.J., Taylor, J.S., Beese, L.S.

(2003) Proc Natl Acad Sci U S A 100: 3895-3900

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA Polymerase I (protein) 5'-D(GPACPGPTPAPCPGPTPGPAPTPCPGPCPA)-3' (nucleic acid) 5'-D(GPCPGPAPTPCPAPCP*G)-3' (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1L3T \| pdb_00001l3t	Download File View File

Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue

Johnson, S.J., Taylor, J.S., Beese, L.S.

(2003) Proc Natl Acad Sci U S A 100: 3895-3900

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA Polymerase I (protein) 5'-D(GPAPCPGTPAPCPGPTPGPAPTPCPGPCPA)-3' (nucleic acid) 5'-D(GPCPGPAPTPCPAPCPGPT)-3' (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1L3U \| pdb_00001l3u	Download File View File

Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 11 base pairs of duplex DNA following addition of a dTTP and a dATP residue.

Johnson, S.J., Taylor, J.S., Beese, L.S.

(2003) Proc Natl Acad Sci U S A 100: 3895-3900

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA Polymerase I (protein) 5'-D(GPAPCGPTPAPCPGPTPGPAPTPCPGPCPA)-3' (nucleic acid) 5'-D(GPCPGPAPTPCPAPCPGPTP*A)-3' (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1L3V \| pdb_00001l3v	Download File View File

Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 15 base pairs of duplex DNA following addition of dTTP, dATP, dCTP, and dGTP residues.

Johnson, S.J., Taylor, J.S., Beese, L.S.

(2003) Proc Natl Acad Sci U S A 100: 3895-3900

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA Polymerase I (protein) 5'-D(GPAPCPGPTPAPCPGPTPGPAPTPCPGPCPA)-3' (nucleic acid) 5'-D(GPCPGPAPTPCPAPCPGPTPAPCPGPTP*C)-3' (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1L5U \| pdb_00001l5u	Download File View File

Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 12 base pairs of duplex DNA following addition of a dTTP, a dATP, and a dCTP residue.

Johnson, S.J., Taylor, J.S., Beese, L.S.

(2003) Proc Natl Acad Sci U S A 100: 3895-3900

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA Polymerase I (protein) 5'-D(GPACPGPTPAPCPGPTPGPAPTPCPGPCPA)-3' (nucleic acid) 5'-D(GPCPGPAPTPCPAPCPGPTPAPC)-3' (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1LV5 \| pdb_00001lv5	Download File View File

Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP

Johnson, S.J., Taylor, J.S., Beese, L.S.

(2003) Proc Natl Acad Sci U S A 100: 3895-3900

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) 5'-D(APCPGPTPCPGPCPTPGPAPTPCPCPG)-3' (nucleic acid) 5'-D(GPGPAPTPCPAPGPCPGPA)-3' (nucleic acid)
Unique Ligands	DCP, MG, MN, SO4

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1NJW \| pdb_00001njw	Download File View File

GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1NJX \| pdb_00001njx	Download File View File

THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1NJY \| pdb_00001njy	Download File View File

THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	MG, SO4, TTP
Unique branched monosaccharides	FRU, GLC

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1NJZ \| pdb_00001njz	Download File View File

CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1NK0 \| pdb_00001nk0	Download File View File

ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	MES, SO4
Unique branched monosaccharides	FRU, GLC

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1NK4 \| pdb_00001nk4	Download File View File

GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1NK5 \| pdb_00001nk5	Download File View File

ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	MG, SO4
Unique branched monosaccharides	FRU, GLC

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1NK6 \| pdb_00001nk6	Download File View File

CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE

Johnson, S.J., Beese, L.S.

(2004) Cell 116: 803-816

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	DNA POLYMERASE I (protein) DNA PRIMER STRAND (nucleic acid) DNA TEMPLATE STRAND (nucleic acid)
Unique Ligands	SO4
Unique branched monosaccharides	FRU, GLC

1 to 25 of 316 Structures

Page 1 of 13

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A9O | pdb_00001a9o

1A9P | pdb_00001a9p

1A9Q | pdb_00001a9q

1A9R | pdb_00001a9r

1A9S | pdb_00001a9s

1A9T | pdb_00001a9t

1B8N | pdb_00001b8n

1B8O | pdb_00001b8o

1ECP | pdb_00001ecp

1K2P | pdb_00001k2p

1K3F | pdb_00001k3f

1L3S | pdb_00001l3s

1L3T | pdb_00001l3t

1L3U | pdb_00001l3u

1L3V | pdb_00001l3v

1L5U | pdb_00001l5u

1LV5 | pdb_00001lv5

1NJW | pdb_00001njw

1NJX | pdb_00001njx

1NJY | pdb_00001njy

1NJZ | pdb_00001njz

1NK0 | pdb_00001nk0

1NK4 | pdb_00001nk4

1NK5 | pdb_00001nk5

1NK6 | pdb_00001nk6