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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Tanaka, T."

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Search Summary

This query matches 326 Structures.

Refinements

Structure Determination Methodology

experimental (326)

Scientific Name of Source Organism

	Homo sapiens (96)
	Methanosarcina mazei Go1 (41)
	synthetic construct (24)
	Gallus gallus (23)
	Mus musculus (21)
	Halobacterium salinarum NRC-1 (19)
	Bos taurus (17)
	Escherichia coli (14)
	Rattus norvegicus (14)
	Escherichia coli K-12 (9)

More...

Taxonomy

	Eukaryota (163)
	Archaea (82)
	Bacteria (79)
	other sequences (24)
	Riboviria (4)
	Eukaryota (eukaryotes) (3)
	Riboviria (RNA viruses and viroids) (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (283)
	ELECTRON MICROSCOPY (21)
	SOLUTION NMR (21)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (323)
	DNA (29)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (14)
	1.5 - 2.0 (72)
	2.0 - 2.5 (135)
	2.5 - 3.0 (50)
	3.0 - 3.5 (20)
	3.5 - 4.0 (9)
	> 4.5 (4)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (1)
	1995 - 1999 (11)
	2000 - 2004 (8)
	2005 - 2009 (43)
	2010 - 2014 (42)
	2015 - 2019 (78)
	2020 - 2024 (130)
	2025 - 2029 (12)

Enzyme Classification Name

	Hydrolases (80)
	Transferases (48)
	Lyases (43)
	Oxidoreductases (10)
	Translocases (3)
	Isomerases (7)
	Ligases (4)

Membrane Protein Annotation

	PDBTM (72)
	MemProtMD (48)
	mpstruc (44)
	OPM (15)

Symmetry Type

	Asymmetric (214)
	Cyclic (100)
	Dihedral (16)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (49)
	Artifacts (19)
	All beta proteins (30)
	Alpha and beta proteins (a/b) (20)
	All alpha proteins (17)
	Membrane and cell surface proteins and peptides (19)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (2)

AllSelected

1 to 25 of 326 Structures

Page 1 of 14

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1BXD \| pdb_00001bxd	Download File View File

NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ

Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., Park, H., Dutta, R., Qin, L., Swindells, M.B., Yamazaki, T., Ono, A.M., Kainosho, M., Inouye, M., Ikura, M.

(1998) Nature 396: 88-92

Released	1999-10-02
Method	SOLUTION NMR
Organisms	Escherichia coli BL21(DE3)
Macromolecule	PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)) (protein)
Unique Ligands	ANP

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1DLF \| pdb_00001dlf	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25

Nakasako, M., Takahashi, H., Shimada, I., Arata, Y.

(1999) J Mol Biology 291: 117-134

Released	1999-07-26
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mus musculus
Macromolecule	ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (protein)
Unique Ligands	SO4

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1DMO \| pdb_00001dmo	Download File View File

CALMODULIN, NMR, 30 STRUCTURES

Zhang, M., Tanaka, T., Ikura, M.

(1995) Nat Struct Biol 2: 758-767

Released	1996-08-01
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1GLV \| pdb_00001glv	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE SYNTHETASE FROM ESCHERICHIA COLI B AT 2.0 ANGSTROMS RESOLUTION

Yamaguchi, H., Kato, H., Tanaka, T., Katsube, Y.

(1993) J Mol Biology 229: 1083-1100

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	GLUTATHIONE SYNTHASE (protein)

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1GSA \| pdb_00001gsa	Download File View File

STRUCTURE OF GLUTATHIONE SYNTHETASE COMPLEXED WITH ADP AND GLUTATHIONE

Hara, T., Kato, H., Nishioka, T., Katsube, Y., Oda, J.

(1996) Biochemistry 35: 11967-11974

Released	1996-06-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli B
Macromolecule	GLUTATHIONE SYNTHETASE (protein)
Unique Ligands	ADP, GSH, MG, SO4

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1GSH \| pdb_00001gsh	Download File View File

STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5

Matsuda, K., Kato, H., Yamaguchi, H., Nishioka, T., Katsube, Y., Oda, J.

(1996) Protein Eng 9: 1083-1092

Released	1996-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli B
Macromolecule	GLUTATHIONE BIOSYNTHETIC LIGASE (protein)

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1HZK \| pdb_00001hzk	Download File View File

SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE

Tanaka, T., Fukuda-Ishisaka, S., Hirama, M., Otani, T.

(2001) J Mol Biology 309: 267-283

Released	2001-05-23
Method	SOLUTION NMR
Organisms	Streptomyces globisporus
Macromolecule	C-1027 APOPROTEIN (protein)

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1HZL \| pdb_00001hzl	Download File View File

SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE

Tanaka, T., Fukuda-Ishisaka, S., Hirama, M., Otani, T.

(2001) J Mol Biology 309: 267-283

Released	2001-05-23
Method	SOLUTION NMR
Organisms	Streptomyces globisporus
Macromolecule	C-1027 APOPROTEIN (protein)
Unique Ligands	ROM

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1IKU \| pdb_00001iku	Download File View File

myristoylated recoverin in the calcium-free state, NMR, 22 structures

Tanaka, T., Ames, J.B., Harvey, T.S., Stryer, L., Ikura, M.

(1995) Nature 376: 444-447

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	RECOVERIN (protein)
Unique Ligands	MYR

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1JOY \| pdb_00001joy	Download File View File

SOLUTION STRUCTURE OF THE HOMODIMERIC DOMAIN OF ENVZ FROM ESCHERICHIA COLI BY MULTI-DIMENSIONAL NMR.

Tomomori, C., Tanaka, T., Dutta, R., Park, H., Saha, S.K., Zhu, Y., Ishima, R., Liu, D., Tong, K.I., Kurokawa, H., Qian, H., Inouye, M., Ikura, M.

(1999) Nat Struct Biol 6: 729-734

Released	2000-01-12
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PROTEIN (ENVZ_ECOLI) (protein)

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1JSA \| pdb_00001jsa	Download File View File

MYRISTOYLATED RECOVERIN WITH TWO CALCIUMS BOUND, NMR, 24 STRUCTURES

Ames, J.B., Ishima, R., Tanaka, T., Gordon, J.I., Stryer, L., Ikura, M.

(1997) Nature 389: 198-202

Released	1997-10-15
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	RECOVERIN (protein)
Unique Ligands	CA, MYR

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1K1V \| pdb_00001k1v	Download File View File

Solution Structure of the DNA-Binding Domain of MafG

Kusunoki, H., Motohashi, H., Katsuoka, F., Morohashi, A., Yamamoto, M., Tanaka, T.

(2002) Nat Struct Biol 9: 252-256

Released	2002-04-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	MafG (protein)

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1MUX \| pdb_00001mux	Download File View File

SOLUTION NMR STRUCTURE OF CALMODULIN/W-7 COMPLEX: THE BASIS OF DIVERSITY IN MOLECULAR RECOGNITION, 30 STRUCTURES

Osawa, M., Swindells, M.B., Tanikawa, J., Tanaka, T., Mase, T., Furuya, T., Ikura, M.

(1998) J Mol Biology 276: 165-176

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA, WW7

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1TO4 \| pdb_00001to4	Download File View File

Structure of the cytosolic Cu,Zn SOD from S. mansoni

Cardoso, R.M.F., Silva, C.H.T.P., Ulian de Araujo, A.P., Tanaka, T., Tanaka, M., Garratt, R.C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1569-1578

Released	2004-08-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Schistosoma mansoni
Macromolecule	Superoxide dismutase (protein)
Unique Ligands	CU, ZN

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1TO5 \| pdb_00001to5	Download File View File

Structure of the cytosolic Cu,Zn SOD from S. mansoni

Cardoso, R.M.F., Silva, C.H.T.P., Ulian de Araujo, A.P., Tanaka, T., Tanaka, M., Garratt, R.C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1569-1578

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Schistosoma mansoni
Macromolecule	Superoxide dismutase (protein)
Unique Ligands	ACT, CU, ZN

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1UDY \| pdb_00001udy	Download File View File

Medium-Chain Acyl-CoA Dehydrogenase with 3-Thiaoctanoyl-CoA

Satoh, A., Nakajima, Y., Miyahara, I., Hirotsu, K., Tanaka, T., Nishina, Y., Shiga, K., Tamaoki, H., Setoyama, C., Miura, R.

(2003) J Biochem 134: 297-304

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sus scrofa
Macromolecule	Acyl-CoA dehydrogenase, medium-chain specific (protein)
Unique Ligands	CS8, FAD

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1V4R \| pdb_00001v4r	Download File View File

Solution structure of Streptmycal repressor TraR

Tanaka, T., Komatsu, C., Kobayashi, K., Sugai, M., Kataoka, M., Kohno, T.

To be published

Released	2005-03-01
Method	SOLUTION NMR
Organisms	Streptomyces
Macromolecule	Transcriptional Repressor (protein)

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1WLJ \| pdb_00001wlj	Download File View File

human ISG20

Horio, T., Murai, M., Inoue, T., Hamasaki, T., Tanaka, T., Ohgi, T.

(2004) FEBS Lett 577: 111-116

Released	2004-12-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	interferon stimulated gene 20kDa (protein)
Unique Ligands	ACT, MN, U5P

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2CY1 \| pdb_00002cy1	Download File View File

Crystal structure of APE1850

Shibata, R., Bessho, Y., Umehara, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 69-73

Released	2006-01-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aeropyrum pernix K1
Macromolecule	NusA protein homolog (protein)

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2CZT \| pdb_00002czt	Download File View File

lipocalin-type prostaglandin D synthase

Kumasaka, T., Irikura, D., Ago, H., Aritake, K., Yamamoto, M., Inoue, T., Miyano, M., Urade, Y., Hayaishi, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) J Biological Chem 284: 22344-22352

Released	2006-10-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Prostaglandin-H2 D-isomerase (protein)

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2CZU \| pdb_00002czu	Download File View File

lipocalin-type prostaglandin D synthase

Kumasaka, T., Irikura, D., Ago, H., Aritake, K., Yamamoto, M., Inoue, T., Miyano, M., Urade, Y., Hayaishi, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) J Biological Chem 284: 22344-22352

Released	2006-10-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Prostaglandin-H2 D-isomerase (protein)

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2D7E \| pdb_00002d7e	Download File View File

Crystal structure of N-terminal domain of PriA from E.coli

Sasaki, K., Ose, T., Maenaka, K., Masai, H., Kohda, D.

(2007) EMBO J 26: 2584-2593

Released	2006-11-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Primosomal protein N' (protein)

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2D7G \| pdb_00002d7g	Download File View File

Crystal structure of the aa complex of the N-terminal domain of PriA

Sasaki, K., Ose, T., Maenaka, K., Masai, H., Kohda, D.

(2007) EMBO J 26: 2584-2593

Released	2006-11-07
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Primosomal protein N' (protein) DNA (5'-D(PAPA)-3') (nucleic acid)

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2D7H \| pdb_00002d7h	Download File View File

Crystal structure of the ccc complex of the N-terminal domain of PriA

Sasaki, K., Ose, T., Maenaka, K., Masai, H., Kohda, D.

(2007) EMBO J 26: 2584-2593

Released	2006-11-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Primosomal protein N' (protein) DNA (5'-D(PCPCP*C)-3') (nucleic acid)