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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Tsybrov, F."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Bacillus coahuilensis (13)
	Organic Lake phycodnavirus (3)
	Sphingomonas paucimobilis (1)

Taxonomy

	Bacteria (14)
	Varidnaviria (3)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (7)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)

Release Date

	2020 - 2024 (14)
	2025 - 2029 (3)

Membrane Protein Annotation

	OPM (1)
	PDBTM (1)

Symmetry Type

	Cyclic (14)
	Asymmetric (3)

AllSelected

1 to 17 of 17 Structures

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7ZMY	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the ground state at pH 8.2 in the presence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, NA, OLA, OLC, PO4

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7ZN0	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the M state at pH 8.2 in the presence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, NA, OLA, PO4

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7ZN3	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the L state at pH 8.2 in the presence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, NA, OLA, PO4

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7ZN8	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the ground state at pH 7.0 in the presence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, NA, OLA, OLC, PO4

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7ZN9	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the M state at pH 7.0 in the presence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, PO4

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7ZNA	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the ground state at pH 5.2 in the presence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, NA, OLA, OLC, PO4

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7ZNB	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the M state at pH 5.2 in the presence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, PO4

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7ZNC	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the ground state at pH 7.6 in the absence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, OLC, PO4

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7ZND	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the M state at pH 7.6 in the absence of sodium at 100K

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 1.985 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, OLC, PO4

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7ZNE	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the ground state at pH 8.2 at room temperature, 7.5-ms-long snapshots

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, PO4

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7ZNG	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the ground state at pH 8.2 at room temperature, 500-mks-long snapshots

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, PO4

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7ZNH	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the activated state at pH 8.2 at room temperature, 250-750-mks-snapshot

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, PO4

Explore in 3D

7ZNI	Download File View File

Crystal structure of the light-driven inward proton pump xenorhodopsin BcXeR in the activated state at pH 8.2 at room temperature, 7.5-15-ms-snapshot

Kovalev, K., Tsybrov, F., Alekseev, A., Bourenkov, G., Gordeliy, V.

(2023) Nat Struct Mol Biol 30: 970-979

Released	2023-05-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus coahuilensis
Macromolecule	xenorhodopsin (protein)
Unique Ligands	LFA, OLA, PO4

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8ANQ	Download File View File

Crystal structure of the microbial rhodopsin from Sphingomonas paucimobilis (SpaR)

Kovalev, K., Okhrimenko, I., Marin, E., Gordeliy, V.

(2023) Commun Chem 6: 88-88

Released	2023-05-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Sphingomonas paucimobilis
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LFA

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9IN7	Download File View File

True-atomic resolution crystal structure of the closed state of the viral channelrhodopsin OLPVR1

Bukhdruker, S., Zabelskii, D., Astashkin, R., Gordeliy, V.

(2025) Nat Struct Mol Biol

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Organic Lake phycodnavirus
Macromolecule	Viral rhodopsin OLPVR1 (protein)
Unique Ligands	97N, GOL, LFA, NA, OLC, RET

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9IN8	Download File View File

True-atomic resolution crystal structure of the open state of the viral channelrhodopsin OLPVR1

Bukhdruker, S., Zabelskii, D., Astashkin, R., Bourenkov, G., Gordeliy, V.

(2025) Nat Struct Mol Biol

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Organic Lake phycodnavirus
Macromolecule	Viral rhodopsin OLPVR1 (protein)
Unique Ligands	97N, GOL, LFA, NA, OLC, RET

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9IN9	Download File View File

Structure of the viral channelrhodopsin OLPVR1 at low pH obtained by soaking

Bukhdruker, S., Zabelskii, D., Astashkin, R., Gordeliy, V.

(2025) Nat Struct Mol Biol

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Organic Lake phycodnavirus
Macromolecule	Viral rhodopsin OLPVR1 (protein)
Unique Ligands	97N, LFA, OLC, RET