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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wickstrand, C."

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Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Homo sapiens (44)
	Mycoplana ramosa (6)
	synthetic construct (3)
	unidentified (2)
	Photorhabdus laumondii subsp. laumondii TTO1 (1)
	Serratia marcescens (1)

Taxonomy

	Eukaryota (44)
	Bacteria (8)
	other sequences (3)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (50)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (52)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (19)
	2.0 - 2.5 (15)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (21)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (32)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (45)
	Cyclic (12)

SCOP Classification

	Alpha and beta proteins (a/b) (18)
	Artifacts (13)
	Alpha and beta proteins (a+b) (6)
	All beta proteins (1)

AllSelected

1 to 25 of 52 Structures

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4QA0 \| pdb_00004qa0	Download File View File

Crystal structure of C153F HDAC8 in complex with SAHA

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.242 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, SHH, ZN

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4QA1 \| pdb_00004qa1	Download File View File

Crystal structure of A188T HDAC8 in complex with M344

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, GOL, K, ZN

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4QA2 \| pdb_00004qa2	Download File View File

Crystal structure of I243N HDAC8 in complex with SAHA

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.377 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, SHH, ZN

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4QA3 \| pdb_00004qa3	Download File View File

Crystal structure of T311M HDAC8 in complex with Trichostatin A (TSA)

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.876 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, TSN, ZN

Explore in 3D

4QA4 \| pdb_00004qa4	Download File View File

Crystal structure of H334R HDAC8 in complex with M344

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, GOL, K, ZN

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4QA5 \| pdb_00004qa5	Download File View File

Crystal structure of A188T/Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein) tetrapeptide substrate (protein)
Unique Ligands	GOL, K, MCM, MG, ZN

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4QA6 \| pdb_00004qa6	Download File View File

Crystal structure of I243N/Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.053 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein) tetrapeptide substrate (protein)
Unique Ligands	GOL, K, MCM, ZN

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4QA7 \| pdb_00004qa7	Download File View File

Crystal structure of H334R/Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein) tetrapeptide substrate (protein)
Unique Ligands	GOL, K, MCM, ZN

Explore in 3D

4RN0 \| pdb_00004rn0	Download File View File

Crystal structure of S39D HDAC8 in complex with a largazole analogue.

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 2126-2135

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.761 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, IMD, K, L6G, ZN

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4RN1 \| pdb_00004rn1	Download File View File

Crystal structure of S39D HDAC8 in complex with a largazole analogue.

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 2126-2135

Released	2015-04-08
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, IMD, K, L8G, ZN

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4RN2 \| pdb_00004rn2	Download File View File

Crystal structure of S39D HDAC8 in complex with a largazole analogue.

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 2126-2135

Released	2015-04-08
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	K, L7G, ZN

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4ZUM \| pdb_00004zum	Download File View File

Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a trifluoromethylketone inhibitor

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 4692-4703

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Mycoplana ramosa
Macromolecule	Acetylpolyamine aminohydrolase (protein)
Unique Ligands	FKS, GOL, K, NA, NO3, ZN

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4ZUN \| pdb_00004zun	Download File View File

Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a thiol inhibitor

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 4692-4703

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Mycoplana ramosa
Macromolecule	Acetylpolyamine aminohydrolase (protein)
Unique Ligands	GOL, K, NA, SS9, ZN

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4ZUO \| pdb_00004zuo	Download File View File

Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a hydroxamate inhibitor

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 4692-4703

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Mycoplana ramosa
Macromolecule	Acetylpolyamine aminohydrolase (protein)
Unique Ligands	GOL, K, NH4, XS6, ZN

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4ZUP \| pdb_00004zup	Download File View File

Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a hydroxamate inhibitor

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 4692-4703

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.421 Å
Organisms	Mycoplana ramosa
Macromolecule	Acetylpolyamine aminohydrolase (protein)
Unique Ligands	5XA, GOL, K, NO3, ZN

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4ZUQ \| pdb_00004zuq	Download File View File

Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a hydroxamate inhibitor

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 4692-4703

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Mycoplana ramosa
Macromolecule	Acetylpolyamine aminohydrolase (protein)
Unique Ligands	6XA, GOL, K, NA, ZN

Explore in 3D

4ZUR \| pdb_00004zur	Download File View File

Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a hydroxamate inhibitor

Decroos, C., Christianson, D.W.

(2015) Biochemistry 54: 4692-4703

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Mycoplana ramosa
Macromolecule	Acetylpolyamine aminohydrolase (protein)
Unique Ligands	7XA, GOL, K, NH4, ZN

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5BWZ \| pdb_00005bwz	Download File View File

Crystal structure of S39E HDAC8 in complex with Droxinostat

Decroos, C., Christianson, D.W.

(2019) Biochemistry 58: 4480-4493

Released	2016-06-08
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, XCH, ZN

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5D1B \| pdb_00005d1b	Download File View File

Crystal structure of G117E HDAC8 in complex with TSA

Decroos, C., Christianson, N.H., Gullett, L.E., Bowman, C.M., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2015) Biochemistry 54: 6501-6513

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	K, TSN, ZN

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5D1C \| pdb_00005d1c	Download File View File

Crystal structure of D233G-Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Christianson, N.H., Gullett, L.E., Bowman, C.M., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2015) Biochemistry 54: 6501-6513

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.422 Å
Organisms	Homo sapiens unidentified
Macromolecule	HDAC8 Fluor de Lys tetrapeptide substrate (protein) Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, ZN

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5D1D \| pdb_00005d1d	Download File View File

Crystal structure of P91L-Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Christianson, N.H., Gullett, L.E., Bowman, C.M., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2015) Biochemistry 54: 6501-6513

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.011 Å
Organisms	Homo sapiens unidentified
Macromolecule	HDAC8 Fluor de Lys tetrapeptide substrate (protein) Histone deacetylase 8 (protein)
Unique Ligands	K, ZN

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5DC5 \| pdb_00005dc5	Download File View File

Crystal structure of D176N HDAC8 in complex with M344

Decroos, C., Lee, M.S., Christianson, D.W.

(2016) Biochemistry 55: 820-832

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, K, ZN

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5DC6 \| pdb_00005dc6	Download File View File

Crystal structure of D176N-Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Lee, M.S., Christianson, D.W.

(2016) Biochemistry 55: 820-832

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.553 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Fluor-de-Lys tetrapeptide assay substrate (protein) Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, ZN

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5DC7 \| pdb_00005dc7	Download File View File

Crystal structure of D176A-Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Lee, M.S., Christianson, D.W.

(2016) Biochemistry 55: 820-832

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Fluor-de-Lys tetrapeptide assay substrate (protein) Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, ZN

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5DC8 \| pdb_00005dc8	Download File View File

Crystal structure of H142A-Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Lee, M.S., Christianson, D.W.

(2016) Biochemistry 55: 820-832

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Fluor-de-Lys tetrapeptide assay substrate (protein) Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, ZN

1 to 25 of 52 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4QA0 | pdb_00004qa0

4QA1 | pdb_00004qa1

4QA2 | pdb_00004qa2

4QA3 | pdb_00004qa3

4QA4 | pdb_00004qa4

4QA5 | pdb_00004qa5

4QA6 | pdb_00004qa6

4QA7 | pdb_00004qa7

4RN0 | pdb_00004rn0

4RN1 | pdb_00004rn1

4RN2 | pdb_00004rn2

4ZUM | pdb_00004zum

4ZUN | pdb_00004zun

4ZUO | pdb_00004zuo

4ZUP | pdb_00004zup

4ZUQ | pdb_00004zuq

4ZUR | pdb_00004zur

5BWZ | pdb_00005bwz

5D1B | pdb_00005d1b

5D1C | pdb_00005d1c

5D1D | pdb_00005d1d

5DC5 | pdb_00005dc5

5DC6 | pdb_00005dc6

5DC7 | pdb_00005dc7

5DC8 | pdb_00005dc8