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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wijeyewickrema, L.C."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (10)
	Ananas comosus (3)
	Escherichia coli K-12 (2)
	Helicobacter pylori 26695 (2)
	Dichelobacter nodosus (1)
	Dichelobacter nodosus VCS1703A (1)
	Escherichia coli (1)
	Haementeria ghilianii (1)
	Vibrio cholerae 569B (1)

Taxonomy

	Eukaryota (13)
	Bacteria (8)

Experimental Method

X-RAY DIFFRACTION (21)

Polymer Entity Type

Protein (21)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (12)
	2015 - 2019 (9)

Enzyme Classification Name

Hydrolases (10)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (19)
	Dihedral (2)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	Small proteins (1)

AllSelected

1 to 21 of 21 Structures

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3TI7 \| pdb_00003ti7	Download File View File

Crystal structure of the basic protease BprV from the ovine footrot pathogen, Dichelobacter nodosus

Wong, W., Whisstock, J.C., Porter, C.J.

(2011) J Biological Chem 286: 42180-42187

Released	2011-10-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dichelobacter nodosus VCS1703A
Macromolecule	Basic extracellular subtilisin-like protease BprV (protein)
Unique Ligands	CA

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3TI9 \| pdb_00003ti9	Download File View File

Crystal structure of the basic protease BprB from the ovine footrot pathogen, Dichelobacter nodosus

Wong, W., Whisstock, J.C., Porter, C.J.

(2011) J Biological Chem 286: 42180-42187

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dichelobacter nodosus
Macromolecule	Serine protease (protein)
Unique Ligands	CA, CL, GOL

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4FTF \| pdb_00004ftf	Download File View File

Structure of the Type II secretion system pilotin AspS from Vibrio cholerae

Korotkov, K.V., Evans, T.J.

(2013) PLoS Pathog 9: e1003117-e1003117

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Vibrio cholerae 569B
Macromolecule	Alternate secretin pathway subunit S (VC395_1821, VC1703) (protein)
Unique Ligands	ACT, ZN

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4J1Y \| pdb_00004j1y	Download File View File

The X-ray crystal structure of human complement protease C1s zymogen

Perry, A.J., Wijeyewickrema, L.C., Wilmann, P.G., Gunzburg, M.J., D'Andrea, L., Irving, J.A., Pang, S.S., Duncan, R.C., Wilce, J.A., Whisstock, J.C., Pike, R.N.

(2013) J Biological Chem 288: 15821-15829

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.6645 Å
Organisms	Homo sapiens
Macromolecule	Complement C1s subcomponent (protein)

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4KKD \| pdb_00004kkd	Download File View File

The X-ray crystal structure of Mannose-binding lectin-associated serine proteinase-3 reveals the structural basis for enzyme inactivity associated with the 3MC syndrome

Yongqing, T., Wilmann, P.G., Reeve, S.B., Coetzer, T.H., Smith, A.I., Whisstock, J.C., Pike, R.N., Wijeyewickrema, L.C.

(2013) J Biological Chem 288: 22399-22407

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.5991 Å
Organisms	Homo sapiens
Macromolecule	Mannan-binding lectin serine protease 1 (protein)
Unique Ligands	IMD

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4MCY \| pdb_00004mcy	Download File View File

Immune Receptor

Scally, S.W., Rossjohn, J.

(2013) J Exp Medicine 210: 2569-2582

Released	2013-11-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Citrullinated Vimentin (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein)
Unique Ligands	EDO, NAG

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4MCZ \| pdb_00004mcz	Download File View File

Immune Receptor

Scally, S.W., Rossjohn, J.

(2013) J Exp Medicine 210: 2569-2582

Released	2013-12-04
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	Citrullinated Vimentin (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein)
Unique Ligands	NAG

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4MD0 \| pdb_00004md0	Download File View File

Immune Receptor

Scally, S.W., Rossjohn, J.

(2013) J Exp Medicine 210: 2569-2582

Released	2013-12-04
Method	X-RAY DIFFRACTION 2.194 Å
Organisms	Homo sapiens
Macromolecule	Citrullinated Vimentin (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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4MD4 \| pdb_00004md4	Download File View File

Immune Receptor

Scally, S.W., Rossjohn, J.

(2013) J Exp Medicine 210: 2569-2582

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Aggrecan core protein (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein)
Unique Ligands	EDO, NAG
Unique branched monosaccharides	NAG

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4MD5 \| pdb_00004md5	Download File View File

Immune Receptor

Scally, S.W., Rossjohn, J.

(2013) J Exp Medicine 210: 2569-2582

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Citrullinated Vimentin (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein)
Unique Ligands	EDO, NAG, PGE
Unique branched monosaccharides	NAG

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4MDI \| pdb_00004mdi	Download File View File

Immune Receptor

Scally, S.W., Rossjohn, J.

(2013) J Exp Medicine 210: 2569-2582

Released	2013-12-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Citrullinated Vimentin (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein)
Unique Ligands	EDO, NAG
Unique branched monosaccharides	NAG

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4MDJ \| pdb_00004mdj	Download File View File

Immune Receptor

Scally, S.W., Rossjohn, J.

(2013) J Exp Medicine 210: 2569-2582

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein) Vimentin (protein)
Unique Ligands	EDO, NAG
Unique branched monosaccharides	NAG

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4ZI6 \| pdb_00004zi6	Download File View File

Crystal structure of leucine aminopeptidase from Helicobacter pylori

Modak, J.K., Roujeinikova, A.

(2016) Biochimie 121: 60-71

Released	2015-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Cytosol aminopeptidase (protein)
Unique Ligands	BCT, NA, ZN

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4ZLA \| pdb_00004zla	Download File View File

Bestatin complex structure of leucine aminopeptidase from Helicobacter pylori

Modak, J.K., Roujeinikova, A.

(2016) Biochimie 121: 60-71

Released	2015-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Cytosol aminopeptidase (protein)
Unique Ligands	BCT, BES, NA, ZN

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5UBM \| pdb_00005ubm	Download File View File

Crystal structure of human C1s in complex with inhibitor gigastasin

Pang, S.S., Whisstock, J.C.

(2017) J Immunol 199: 3883-3891

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Haementeria ghilianii Homo sapiens
Macromolecule	Complement C1s subcomponent (protein) Gigastasin (protein)
Unique branched monosaccharides	NAG

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6MIS \| pdb_00006mis	Download File View File

Native ananain in complex with E-64

Yongqing, T., Wilmann, P.G., Pike, R.N., Wijeyewickrema, L.C.

(2019) Biochimie 166: 194-202

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Ananas comosus
Macromolecule	Ananain (protein)
Unique Ligands	E64

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6OFR \| pdb_00006ofr	Download File View File

The crystal structure of the outer membrane transporter YddB from Escherichia coli

Grinter, R.

(2019) PLoS Genet 15: e1008435-e1008435

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	TonB-dependent outer membrane receptor (protein)
Unique Ligands	BOG, GOL, MG

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6OFS \| pdb_00006ofs	Download File View File

The crystal structure of the periplasmic protease PqqL from Escherichia coli

Grinter, R.

(2019) PLoS Genet 15: e1008435-e1008435

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Probable zinc protease PqqL (protein)
Unique Ligands	CL, ZN

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6OFT \| pdb_00006oft	Download File View File

The crystal structure of the first half of the periplasmic protease PqqL from Escherichia coli

Grinter, R.

(2019) PLoS Genet 15: e1008435-e1008435

Released	2019-10-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Probable zinc protease PqqL (protein)
Unique Ligands	CL, GOL, PO4