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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yoon, H.J."

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Search Summary

This query matches 177 Structures.

Refinements

Structure Determination Methodology

experimental (177)

Scientific Name of Source Organism

	Helicobacter pylori 26695 (22)
	Campylobacter jejuni (16)
	Homo sapiens (13)
	Pseudomonas aeruginosa PAO1 (11)
	Staphylococcus aureus subsp. aureus USA300 (9)
	Mycobacterium tuberculosis H37Rv (8)
	synthetic construct (8)
	Carboxydothermus hydrogenoformans Z-2901 (6)
	Mycobacterium tuberculosis (6)
	Thermotoga maritima MSB8 (6)

More...

Taxonomy

	Bacteria (141)
	Eukaryota (25)
	Archaea (9)
	other sequences (8)
	Duplodnaviria (2)

Experimental Method

X-RAY DIFFRACTION (177)

Polymer Entity Type

	Protein (177)
	DNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (49)
	2.0 - 2.5 (75)
	2.5 - 3.0 (37)
	3.0 - 3.5 (13)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (6)
	2005 - 2009 (27)
	2010 - 2014 (44)
	2015 - 2019 (44)
	2020 - 2024 (53)

Enzyme Classification Name

	Transferases (33)
	Hydrolases (28)
	Oxidoreductases (18)
	Lyases (12)
	Ligases (4)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Cyclic (84)
	Asymmetric (80)
	Dihedral (19)
	Tetrahedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (25)
	All beta proteins (14)
	Alpha and beta proteins (a+b) (17)
	All alpha proteins (7)
	Artifacts (5)

AllSelected

1 to 25 of 177 Structures

Page 1 of 8

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1B1Y \| pdb_00001b1y	Download File View File

SEVENFOLD MUTANT OF BARLEY BETA-AMYLASE

Mikami, B., Yoon, H.J., Yoshigi, N.

(1999) J Mol Biology 285: 1235-1243

Released	1998-12-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Hordeum vulgare
Macromolecule	PROTEIN (BETA-AMYLASE) (protein)
Unique Ligands	BGC
Unique branched monosaccharides	BGC, GLC

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1CQY \| pdb_00001cqy	Download File View File

STARCH BINDING DOMAIN OF BACILLUS CEREUS BETA-AMYLASE

Yoon, H.J., Hirata, A., Adachi, M., Sekine, A., Utsumi, S., Mikami, B.

To be published

Released	1999-08-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus cereus
Macromolecule	BETA-AMYLASE (protein)

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1HV6 \| pdb_00001hv6	Download File View File

CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III COMPLEXED WITH TRISACCHARIDE PRODUCT.

Yoon, H.-J., Hashimoto, W., Miyake, O., Murata, K., Mikami, B.

(2001) J Mol Biology 307: 9-16

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sphingomonas sp.
Macromolecule	ALGINATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCU, MAV, MAW

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1PX8 \| pdb_00001px8	Download File View File

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase

Yang, J.K., Yoon, H.J., Ahn, H.J., Il Lee, B., Pedelacq, J.D., Liong, E.C., Berendzen, J., Laivenieks, M., Vieille, C., Zeikus, G.J., Vocadlo, D.J., Withers, S.G., Suh, S.W.

(2004) J Mol Biology 335: 155-165

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermoanaerobacterium saccharolyticum
Macromolecule	Beta-xylosidase (protein)
Unique Ligands	XYP

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1Q1Y \| pdb_00001q1y	Download File View File

Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin

Yoon, H.J., Lee, S.K., Kim, H.L., Kim, H.W., Kim, H.W., Lee, J.Y., Mikami, B., Suh, S.W.

(2004) Proteins 57: 639-642

Released	2004-07-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	Peptide deformylase (protein)
Unique Ligands	BB2, ZN

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1QAZ \| pdb_00001qaz	Download File View File

CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III FROM SPHINGOMONAS SPECIES A1 AT 1.78A RESOLUTION

Yoon, H.-J.

(1999) J Mol Biology 290: 505-514

Released	1999-07-19
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Sphingomonas sp.
Macromolecule	PROTEIN (ALGINATE LYASE A1-III) (protein)
Unique Ligands	SO4

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1UHV \| pdb_00001uhv	Download File View File

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase

Yang, J.K., Yoon, H.J., Ahn, H.J., Il Lee, B., Pedelacq, J.D., Liong, E.C., Berendzen, J., Laivenieks, M., Vieille, C., Zeikus, G.J., Vocadlo, D.J., Withers, S.G., Suh, S.W.

(2004) J Mol Biology 335: 155-165

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermoanaerobacterium saccharolyticum
Macromolecule	Beta-xylosidase (protein)
Unique Ligands	DFX

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1UM0 \| pdb_00001um0	Download File View File

Crystal structure of chorismate synthase complexed with FMN

Ahn, H.J., Yoon, H.J., Lee, B., Suh, S.W.

(2004) J Mol Biology 336: 903-915

Released	2004-06-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Helicobacter pylori
Macromolecule	Chorismate synthase (protein)
Unique Ligands	FMN

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1UMF \| pdb_00001umf	Download File View File

crystal structure of chorismate synthase

Ahn, H.J., Yoon, H.J., Lee, B., Suh, S.W.

(2004) J Mol Biology 336: 903-915

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Helicobacter pylori
Macromolecule	Chorismate synthase (protein)

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1WW4 \| pdb_00001ww4	Download File View File

Agrocybe cylindracea galectin complexed with NeuAca2-3lactose

Ban, M., Yoon, H.J., Demirkan, E., Utsumi, S., Mikami, B., Yagi, F.

(2005) J Mol Biology 351: 695-706

Released	2005-08-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cyclocybe cylindracea
Macromolecule	galectin (protein)
Unique branched monosaccharides	BGC, GAL, GLA, GLC, SIA

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1WW5 \| pdb_00001ww5	Download File View File

Agrocybe cylindracea galectin complexed with 3'-sulfonyl lactose

Ban, M., Yoon, H.J., Demirkan, E., Utsumi, S., Mikami, B., Yagi, F.

(2005) J Mol Biology 351: 695-706

Released	2005-08-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cyclocybe cylindracea
Macromolecule	galectin (protein)
Unique branched monosaccharides	BGC, SGA

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1WW6 \| pdb_00001ww6	Download File View File

Agrocybe cylindracea galectin complexed with lactose

Ban, M., Yoon, H.J., Demirkan, E., Utsumi, S., Mikami, B., Yagi, F.

(2005) J Mol Biology 351: 695-706

Released	2005-08-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cyclocybe cylindracea
Macromolecule	galectin (protein)
Unique branched monosaccharides	BGC, GAL

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1WW7 \| pdb_00001ww7	Download File View File

Agrocybe cylindracea galectin (Ligand-free)

Ban, M., Yoon, H.J., Demirkan, E., Utsumi, S., Mikami, B., Yagi, F.

(2005) J Mol Biology 351: 695-706

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cyclocybe cylindracea
Macromolecule	galectin (protein)
Unique Ligands	SO4

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1YUL \| pdb_00001yul	Download File View File

Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa

Yoon, H.J., Kim, H.L., Mikami, B., Suh, S.W.

(2005) J Mol Biology 351: 258-265

Released	2005-11-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	CIT

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1YUM \| pdb_00001yum	Download File View File

Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa

Yoon, H.J., Kim, H.L., Mikami, B., Suh, S.W.

(2005) J Mol Biology 351: 258-265

Released	2005-11-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	'Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	CIT, NCN

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1YUN \| pdb_00001yun	Download File View File

Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa

Yoon, H.J., Kim, H.L., Mikami, B., Suh, S.W.

(2005) J Mol Biology 351: 258-265

Released	2005-11-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	ATP, MG

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2ARS \| pdb_00002ars	Download File View File

Crystal structure of lipoate-protein ligase A From Thermoplasma acidophilum

Kim, D.J., Kim, K.H., Lee, H.H., Lee, S.J., Ha, J.Y., Yoon, H.J., Suh, S.W.

(2005) J Biological Chem 280: 38081-38089

Released	2005-10-04
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Lipoate-protein ligase A (protein)
Unique Ligands	MG

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2ART \| pdb_00002art	Download File View File

Crystal structure of lipoate-protein ligase A bound with lipoyl-AMP

Kim, D.J., Kim, K.H., Lee, H.H., Lee, S.J., Ha, J.Y., Yoon, H.J., Suh, S.W.

(2005) J Biological Chem 280: 38081-38089

Released	2005-10-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Lipoate-protein ligase A (protein)
Unique Ligands	AMP, LPA, MG

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2ARU \| pdb_00002aru	Download File View File

Crystal structure of lipoate-protein ligase A bound with ATP

Kim, D.J., Kim, K.H., Lee, H.H., Lee, S.J., Ha, J.Y., Yoon, H.J., Suh, S.W.

(2005) J Biological Chem 280: 38081-38089

Released	2005-10-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermoplasma acidophilum
Macromolecule	Lipoate-protein ligase A (protein)
Unique Ligands	ATP, MG

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2F4F \| pdb_00002f4f	Download File View File

Crystal structure of IS200 transposase

Lee, H.H., Yoon, J.Y., Kim, H.S., Kang, J.Y., Kim, K.H., Kim, D.J., Suh, S.W.

(2006) J Biological Chem 281: 4261-4266

Released	2005-12-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Transposase, putative (protein)
Unique Ligands	MN

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2F5G \| pdb_00002f5g	Download File View File

Crystal structure of IS200 transposase

Lee, H.H., Yoon, J.Y., Kim, H.S., Kang, J.Y., Kim, K.H., Kim, D.J., Suh, S.W.

(2006) J Biological Chem 281: 4261-4266

Released	2005-12-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Transposase, putative (protein)

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2GJL \| pdb_00002gjl	Download File View File

Crystal Structure of 2-nitropropane dioxygenase

Suh, S.W.

(2006) J Biological Chem 281: 18660-18667

Released	2006-05-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	hypothetical protein PA1024 (protein)
Unique Ligands	FMN

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2GJN \| pdb_00002gjn	Download File View File

crystal structure of 2-nitropropane dioxygenase complexed with FMN and substrate

Suh, S.W.

(2006) J Biological Chem 281: 18660-18667

Released	2006-05-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	hypothetical protein PA1024 (protein)
Unique Ligands	FMN, NIS

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2O4C \| pdb_00002o4c	Download File View File

Crystal Structure of D-Erythronate-4-phosphate Dehydrogenase Complexed with NAD

Ha, J.Y., Lee, J.H., Kim, K.H., Kim, D.J., Lee, H.H., Kim, H.K., Yoon, H.J., Suh, S.W.

(2007) J Mol Biology 366: 1294-1304

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Erythronate-4-phosphate dehydrogenase (protein)
Unique Ligands	GOL, NAD, PO4, TLA