RCSB PDB: Search

3LHC \| pdb_00003lhc	Download File View File

Crystal structure of cyanovirin-n swapping domain b mutant

Matei, E., Zheng, A., Furey, W., Rose, J., Aiken, C., Gronenborn, A.M.

(2010) J Biological Chem 285: 13057-13065

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)
Unique Ligands	NA, PO4

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3WBI \| pdb_00003wbi	Download File View File

Crystal structure analysis of eukaryotic translation initiation factor 5B structure I

Zheng, A., Yamamoto, R., Ose, T., Yu, J., Tanaka, I., Yao, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 3090-3098

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Eukaryotic translation initiation factor 5B (protein)

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3WBJ \| pdb_00003wbj	Download File View File

Crystal structure analysis of eukaryotic translation initiation factor 5B structure II

Zheng, A., Yamamoto, R., Ose, T., Yu, J., Tanaka, I., Yao, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 3090-3098

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.495 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Eukaryotic translation initiation factor 5B (protein)

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3WBK \| pdb_00003wbk	Download File View File

crystal structure analysis of eukaryotic translation initiation factor 5B and 1A complex

Zheng, A., Yamamoto, R., Ose, T., Yu, J., Tanaka, I., Yao, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 3090-3098

Released	2014-11-19
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Eukaryotic translation initiation factor 1A (protein) Eukaryotic translation initiation factor 5B (protein)

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4I3R \| pdb_00004i3r	Download File View File

Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221

Joyce, M.G., Biertumpfel, C., Nabel, G.J., Kwong, P.D.

(2013) J Virol 87: 2294-2306

Released	2013-01-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	Heavy chain of VRC-PG04 Fab (protein) Light chain of VRC-PG04 Fab (protein) Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) (protein)
Unique Ligands	NAG

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4I3S \| pdb_00004i3s	Download File View File

Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21

Joyce, M.G., Biertumpfel, C., Nabel, G.J., Kwong, P.D.

(2013) J Virol 87: 2294-2306

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	Heavy chain of VRC-PG04 Fab (protein) Light chain of VRC-PG04 Fab (protein) Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) (protein)
Unique Ligands	CA

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4JAM \| pdb_00004jam	Download File View File

Crystal structure of broadly neutralizing anti-hiv-1 antibody ch103

Zhou, T., Moquin, S., Zheng, A., Srivatsan, S., Kwong, P.D.

(2013) Nature 496: 469-476

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN of CH103 (protein) ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN of CH103 (protein)
Unique Ligands	EDO, GOL, SO4

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4JAN \| pdb_00004jan	Download File View File

crystal structure of broadly neutralizing antibody CH103 in complex with HIV-1 gp120

Zhou, T., Moquin, S., Zheng, A., Srivatsan, S., Kwong, P.D.

(2013) Nature 496: 469-476

Released	2013-04-03
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN of CH103 (protein) ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN of CH103 (protein) ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C (protein)
Unique Ligands	GOL, NA, NAG

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4JPW \| pdb_00004jpw	Download File View File

Crystal structure of broadly and potently neutralizing antibody 12a21 in complex with hiv-1 strain 93th057 gp120 mutant

Acharya, P., Luongo, T., Zhou, T., Kwong, P.D.

(2013) Cell 153: 126-138

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.904 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY 12A21 (protein) HIV-1 CLADE A/E STRAIN 73TH057 GP120 WITH MUTATION H375S (protein) LIGHT CHAIN OF ANTIBODY 12A21 (protein)
Unique Ligands	EPE, NAG

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4LSP \| pdb_00004lsp	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) HIV-1 CLADE A/E STRAIN 93TH057 GP120 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 (protein)
Unique Ligands	EDO, NA, NAG, PEG, SO4
Unique branched monosaccharides	BMA, NAG

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4LSQ \| pdb_00004lsq	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057 with LOOP D and Loop V5 from clade A strain 3415_v1_c1

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN 3415_V1_C1 (protein) HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 WITH N70D MUTATION (protein)
Unique Ligands	BU3, CD, CL, NA, NAG

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4LSR \| pdb_00004lsr	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E stran 93TH057 gp120 with LOOP D and Loop V5 from clade A strain KER_2018_11

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN ker_2018_11 (protein) HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 (N70D MUTATION) (protein)
Unique Ligands	NAG, SO4

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4LSS \| pdb_00004lss	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade A strain KER_2018_11 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC01 (protein) LIGHT CHAIN OF ANTIBODY VRC01 with N72T mutation (protein) envelope glycoprotein GP120 (protein)
Unique Ligands	EPE, IPA, NA, NAG

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4LST \| pdb_00004lst	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade C strain ZM176.66 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C (protein) HEAVY CHAIN OF ANTIBODY VRC01 (protein) LIGHT CHAIN OF ANTIBODY VRC01 (protein)
Unique Ligands	NAG

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4LSU \| pdb_00004lsu	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-PG20 in complex with HIV-1 clade A/E 93TH057 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC-PG20 (protein) HIV-1 CLADE A/E STRAIN 93TH057 GP120 (protein) LIGHT CHAIN OF ANTIBODY VRC-PG20 (protein)
Unique Ligands	CL, EDO, EPE, NAG

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4LSV \| pdb_00004lsv	Download File View File

Crystal structure of broadly and potently neutralizing antibody 3BNC117 in complex with HIV-1 clade C C1086 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY 3BNC117 (protein) LIGHT CHAIN OF ANTIBODY 3BNC117 (protein) envelope glycoprotein GP120 (protein)
Unique Ligands	IMD, NAG

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4MMQ \| pdb_00004mmq	Download File View File

Crystal Structure of Prefusion-stabilized RSV F Variant DS

Mclellan, J.S., Joyce, M.G., Stewart-Jones, G.B.E., Sastry, M., Yang, Y., Graham, B.S., Kwong, P.D.

(2013) Science 342: 592-598

Released	2013-11-20
Method	X-RAY DIFFRACTION 3.253 Å
Organisms	Human respiratory syncytial virus A2 Tequatrovirus T4
Macromolecule	Fusion glycoprotein F1 fused with Fibritin trimerization domain (protein) Fusion glycoprotein F2 (protein)
Unique Ligands	SO4

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4MMR \| pdb_00004mmr	Download File View File

Crystal Structure of Prefusion-stabilized RSV F Variant Cav1 at pH 9.5

Stewart-Jones, G.B.E., McLellan, J.S., Joyce, M.G., Sastry, M., Yang, Y., Graham, B.S., Kwong, P.D.

(2013) Science 342: 592-598

Released	2013-11-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Human respiratory syncytial virus A2 Tequatrovirus T4
Macromolecule	Fusion glycoprotein F1 fused with Fibritin trimerization domain (protein) Fusion glycoprotein F2 (protein)

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4MMS \| pdb_00004mms	Download File View File

Crystal Structure of Prefusion-stabilized RSV F Variant Cav1 at pH 5.5

Mclellan, J.S., Joyce, M.G., Stewart-Jones, G.B.E., Sastry, M., Yang, Y., Graham, B.S., Kwong, P.D.

(2013) Science 342: 592-598

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.397 Å
Organisms	Human respiratory syncytial virus A2 Tequatrovirus T4
Macromolecule	Fusion glycoprotein F1 fused with Fibritin trimerization domain (protein) Fusion glycoprotein F2 (protein)
Unique Ligands	SO4

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4MMT \| pdb_00004mmt	Download File View File

Crystal Structure of Prefusion-stabilized RSV F Variant DS-Cav1 at pH 9.5

Joyce, M.G., Mclellan, J.S., Stewart-Jones, G.B.E., Sastry, M., Yang, Y., Graham, B.S., Kwong, P.D.

(2013) Science 342: 592-598

Released	2013-11-20
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Human respiratory syncytial virus A2 Tequatrovirus T4
Macromolecule	Fusion glycoprotein F1 fused with Fibritin trimerization domain (protein) Fusion glycoprotein F2 (protein)

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4MMU \| pdb_00004mmu	Download File View File

Crystal Structure of Prefusion-stabilized RSV F Variant DS-Cav1 at pH 5.5

Joyce, M.G., Mclellan, J.S., Stewart-Jones, G.B.E., Sastry, M., Yang, Y., Graham, B.S., Kwong, P.D.

(2013) Science 342: 592-598

Released	2013-11-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human respiratory syncytial virus A2 Tequatrovirus T4
Macromolecule	Fusion glycoprotein F1 fused with Fibritin trimerization domain (protein) Fusion glycoprotein F2 (protein)
Unique Ligands	NAG, PO4, SO4

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4MMV \| pdb_00004mmv	Download File View File

Crystal Structure of Prefusion-stabilized RSV F Variant DS-Cav1-TriC at pH 9.5

Stewart-Jones, G.B.E., McLellan, J.S., Joyce, M.G., Sastry, M., Yang, Y., Graham, B.S., Kwong, P.D.

(2013) Science 342: 592-598

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Human respiratory syncytial virus A2 Tequatrovirus T4
Macromolecule	Fusion glycoprotein F1 fused with Fibritin trimerization domain (protein) Fusion glycoprotein F2 (protein)

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4QMG \| pdb_00004qmg	Download File View File

The Structure of MTDH-SND1 Complex Reveals Novel Cancer-Promoting Interactions

Guo, F., Stanevich, V., Wan, L., Satyshur, K., Kang, Y., Xing, Y.

(2014) Cell Rep 8: 1704-1713

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.701 Å
Organisms	Homo sapiens
Macromolecule	Protein LYRIC (protein) Staphylococcal nuclease domain-containing protein 1 (protein)
Unique Ligands	CS, GOL, SO4

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4RWY \| pdb_00004rwy	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC131 in complex with HIV-1 clade B YU2 gp120

Acharya, P., Luongo, T.S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.128 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody 8ANC131 Heavy chain (protein) Antibody 8ANC131 Light chain (protein) HIV-1 YU2 gp120 (protein)
Unique Ligands	EDO, EPE, NA, NAG

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4RX4 \| pdb_00004rx4	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC134 in complex with HIV-1 clade A Q842.d12 gp120

Zhou, T., Acharya, P., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	8ANC134 Heavy chain (protein) 8ANC134 Light Chain (protein) HIV-1 Clade A Q842.d12 gp120 (protein)
Unique Ligands	EDO, NAG, SO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3LHC | pdb_00003lhc

3WBI | pdb_00003wbi

3WBJ | pdb_00003wbj

3WBK | pdb_00003wbk

4I3R | pdb_00004i3r

4I3S | pdb_00004i3s

4JAM | pdb_00004jam

4JAN | pdb_00004jan

4JPW | pdb_00004jpw

4LSP | pdb_00004lsp

4LSQ | pdb_00004lsq

4LSR | pdb_00004lsr

4LSS | pdb_00004lss

4LST | pdb_00004lst

4LSU | pdb_00004lsu

4LSV | pdb_00004lsv

4MMQ | pdb_00004mmq

4MMR | pdb_00004mmr

4MMS | pdb_00004mms

4MMT | pdb_00004mmt

4MMU | pdb_00004mmu

4MMV | pdb_00004mmv

4QMG | pdb_00004qmg

4RWY | pdb_00004rwy

4RX4 | pdb_00004rx4