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237,777
Structures from the PDB archive

1,068,577
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QUERY: BIRD Name HAS EXACT PHRASE "=Actinomycin D"

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Streptomyces antibioticus (13)
	synthetic construct (9)
	Streptomyces (5)
	Streptomyces sp. (3)
	Streptomyces parvulus (1)

Taxonomy

	Bacteria (22)
	other sequences (9)

Experimental Method

	X-RAY DIFFRACTION (17)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (22)
	DNA (21)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (5)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (7)
	2000 - 2004 (4)
	2010 - 2014 (1)
	2015 - 2019 (1)
	2020 - 2024 (6)
	2025 - 2029 (2)

Symmetry Type

	Asymmetric (17)
	Cyclic (5)

AllSelected

1 to 22 of 22 Structures

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173D \| pdb_0000173d	Download File View File

MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA

Kamitori, S., Takusagawa, F.

(1994) J Am Chem Soc 116: 4154

Released	1994-10-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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1A7Y \| pdb_00001a7y	Download File View File

CRYSTAL STRUCTURE OF ACTINOMYCIN D

Schafer, M., Sheldrick, G.M., Bahner, I., Lackner, H.

(1998) Angew Chem Int Ed Engl 37: 2381-2384

Released	1999-03-23
Method	X-RAY DIFFRACTION 0.94 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein)
Unique Ligands	EEE, MOH

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1DSC \| pdb_00001dsc	Download File View File

NMR STUDY OF DNA (5'-D(GPAPAPGPCPTPTPC)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE

Lian, C., Robinson, H., Wang, A.H.-J.

(1996) J Am Chem Soc 118: 8791

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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1DSD \| pdb_00001dsd	Download File View File

NMR STUDY OF DNA (5'-D(GPAPTPGPCPTPTPC)-3') T:T MISMATCHED DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE

Lian, C., Robinson, H., Wang, A.H.-J.

(1996) J Am Chem Soc 118: 8791

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPTPGPCPTPTPC)-3') (nucleic acid)

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1FJA \| pdb_00001fja	Download File View File

NMR STUDY OF DEOXYRIBONUCLEIC ACID COMPLEXED WITH ACTINOMYCIN D

Chen, H., Liu, X., Patel, D.J.

(1996) J Mol Biology 258: 457

Released	1996-06-10
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(APAPGPCPGPCPTPT)-3') (nucleic acid)

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1I3W \| pdb_00001i3w	Download File View File

ACTINOMYCIN D BINDING TO CGATCGATCG

Robinson, H., Gao, Y.-G., Yang, X.-L., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2001) Biochemistry 40: 5587

Released	2001-05-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(CGPAPTPCPGPAP(BRU)PCPGP)-3' (nucleic acid)

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1L1V \| pdb_00001l1v	Download File View File

UNUSUAL ACTD/DNA_TA COMPLEX STRUCTURE

Chou, S.-H., Chin, K.-H., Chen, F.-M.

(2002) Proc Natl Acad Sci U S A 99: 6625

Released	2002-03-06
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(GPTPCPAPCPCPGPAP*C)-3' (nucleic acid)

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1MNV \| pdb_00001mnv	Download File View File

Actinomycin D binding to ATGCTGCAT

Hou, M.-H., Robinson, H., Gao, Y.-G., Wang, A.H.-J.

(2002) Nucleic Acids Res 30: 4910

Released	2002-11-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(APTPGPCPTPGPCPAP*T)-3' (nucleic acid)

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1OVF \| pdb_00001ovf	Download File View File

NMR Structure of ActD/5'-CCGTTTTGTGG-3' Complex

Chin, K.-H., Chou, S.-H., Chen, F.-M.

(2003) Nucleic Acids Res 31: 2622

Released	2003-05-27
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) (5'-D(CPCPGPTPTPTPTPGPTPGP*G)-3') (nucleic acid)

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2D55 \| pdb_00002d55	Download File View File

Structural, physical and biological characteristics of RNA.DNA binding agent N8-actinomycin D

Shinomiya, M., Chu, W., Carlson, R.G., Weaver, R.F., Takusagawa, F.

(1992) J Mol Biology 225: 445

Released	1995-10-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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4HIV \| pdb_00004hiv	Download File View File

Structure of actinomycin D d(ATGCGGCAT) complex

Lo, Y.S., Tseng, W.H., Hou, M.H.

(2013) Nucleic Acids Res 41: 4284-4294

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(APTPGPCPGPGPCPAP*T)-3') (nucleic acid)

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6J0H \| pdb_00006j0h	Download File View File

Crystal structure of Actinomycin D- d(TTGGCGAA) complex

Satange, R.B., Hou, M.H.

(2019) Nucleic Acids Res 47: 8899-8912

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Streptomyces sp. synthetic construct
Macromolecule	Actinomycin D (protein) DNA (5'-D(PTPTPGPGPCPGPAPA)-3') (nucleic acid)
Unique Ligands	NA

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7DQ0 \| pdb_00007dq0	Download File View File

Crystal structure of actinomycin D-echinomycin-d(ACGTGCT/AGCTCGT) complex

Satange, R.B., Hou, M.H.

(2023) Nucleic Acids Res

Released	2021-12-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces sp. synthetic construct
Macromolecule	Actinomycin D (protein) Echinomycin (protein) DNA (5'-D(PAPGPCPTPCPGP*T)-3') (nucleic acid)
Unique Ligands	CL, QUI, ZN

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7DQ8 \| pdb_00007dq8	Download File View File

Crystal structure of actinomycin D-echinomycin-d(ACGCGCT/AGCTCGT) complex

Satange, R.B., Hou, M.H.

(2023) Nucleic Acids Res

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces sp. synthetic construct
Macromolecule	Actinomycin D (protein) Echinomycin (protein) DNA (5'-D(PAPCPGPCPGPCPT)-3') (nucleic acid) DNA (5'-D(PAPGPCPTPCPGPT)-3') (nucleic acid)
Unique Ligands	MG, QUI

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7X6R \| pdb_00007x6r	Download File View File

Crystal structure of actinomycin D-echinomycin-d(AGCACGT/ACGGGCT) complex

Kao, S.H., Satange, R.B., Hou, M.H.

(2022) Nucleic Acids Res 50: 8867-8881

Released	2022-12-14
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Streptomyces synthetic construct
Macromolecule	Actinomycin D (protein) DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA (protein) DNA (5'-D(PAPCPGPGPGPCPT)-3') (nucleic acid) DNA (5'-D(PAPGPCPAPCPGPT)-3') (nucleic acid)
Unique Ligands	CO, QUI

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7X97 \| pdb_00007x97	Download File View File

Crystal structure of actinomycin D-echinomycin-d(AGCCCGT/ACGGGCT) complex

Kao, S.H., Satange, R.B., Hou, M.H.

(2022) Nucleic Acids Res 50: 8867-8881

Released	2022-12-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces synthetic construct
Macromolecule	Actinomycin D (protein) DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA (protein) DNA (5'-D(PAPCPGPGPGPCPT)-3') (nucleic acid) DNA (5'-D(PAPGPCPCPCPGPT)-3') (nucleic acid)
Unique Ligands	CL, K, QUI, ZN

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7X9F \| pdb_00007x9f	Download File View File

Crystal structure of actinomycin D-echinomycin-d(AGCGCGT/ACGCGCT) complex

Kao, S.H., Satange, R.B., Hou, M.H.

(2022) Nucleic Acids Res 50: 8867-8881

Released	2022-12-14
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Streptomyces synthetic construct
Macromolecule	DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA (protein) THR-DVA-PRO-SAR-MVA-PXF-THR-DVA-PRO-SAR-MVA (protein) DNA (5'-D(PAPCPGPCPGPCPT)-3') (nucleic acid) DNA (5'-D(PAPGPCPGPCPGPT)-3') (nucleic acid)
Unique Ligands	MN, QUI

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7XDJ \| pdb_00007xdj	Download File View File

Crystal structure of actinomycin D-echinomycin-d(AGCGCGT/ACGAGCT) complex

Chien, C.M., Satange, R.B., Hou, M.H.

(2022) Nucleic Acids Res 50: 8867-8881

Released	2022-12-14
Method	X-RAY DIFFRACTION 2.435 Å
Organisms	Streptomyces synthetic construct
Macromolecule	DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA (protein) THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA (protein) DNA (5'-D(PAPCPGPAPGPCP(BRU))-3') (nucleic acid) DNA (5'-D(PAPGPCPGPCPGPT)-3') (nucleic acid)
Unique Ligands	CL, MG, QUI

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8YS7 \| pdb_00008ys7	Download File View File

Crystal structure of actinomycin D and Echinomycin-d(ACGGGCT/AGCCCCGT) complex

Lee, Y.Y., Hou, M.H.

To be published

Released	2025-04-09
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Streptomyces synthetic construct
Macromolecule	Echinomycin (protein) actinomycin D (protein) DNA (5'-D(PAPCPGPGPGPCPT)-3') (nucleic acid) DNA (5'-D(PAPGPCPCPCPCPGP*T)-3') (nucleic acid)
Unique Ligands	QUI

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9JL7 \| pdb_00009jl7	Download File View File

Crystal structure of Actinomycin D-Doxorubicin-d(AGCCGT)2 DNA ternary complex

Li, H.J., Satange, R.B., Hou, M.H.

(2025) J Med Chem 68: 6601-6615

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Streptomyces parvulus synthetic construct
Macromolecule	Actinomycin D (protein) DNA (5'-D(PAPCPGPGPCPT)-3') (nucleic acid) DNA (5'-D(PAPGPCPCPGPT)-3') (nucleic acid)
Unique Ligands	CL, DM2, MN

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209D \| pdb_0000209d	Download File View File

Structural, physical and biological characteristics of RNA:DNA binding agent N8-actinomycin D

Shinomiya, M., Chu, W., Carlson, R.G., Weaver, R.F., Takusagawa, F.

(1995) Biochemistry 34: 8481

Released	1995-10-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptomyces antibioticus
Macromolecule	N8-ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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316D \| pdb_0000316d	Download File View File

Selectivity of F8-actinomycin D for RNA:DNA hybrids and its anti-leukemia activity

Takusagawa, F., Takusagawa, K.T., Carlson, R.G., Weaver, R.F.

(1997) Bioorg Med Chem 5: 1197

Released	1997-11-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptomyces antibioticus
Macromolecule	8-FLUORO-ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

173D | pdb_0000173d

1A7Y | pdb_00001a7y

1DSC | pdb_00001dsc

1DSD | pdb_00001dsd

1FJA | pdb_00001fja

1I3W | pdb_00001i3w

1L1V | pdb_00001l1v

1MNV | pdb_00001mnv

1OVF | pdb_00001ovf

2D55 | pdb_00002d55

4HIV | pdb_00004hiv

6J0H | pdb_00006j0h

7DQ0 | pdb_00007dq0

7DQ8 | pdb_00007dq8

7X6R | pdb_00007x6r

7X97 | pdb_00007x97

7X9F | pdb_00007x9f

7XDJ | pdb_00007xdj

8YS7 | pdb_00008ys7

9JL7 | pdb_00009jl7

209D | pdb_0000209d

316D | pdb_0000316d