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240,665
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

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QUERY: BIRD Name HAS EXACT PHRASE "=Pepstatin"

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Streptomyces argenteolus subsp. toyonakensis (20)
	Plasmodium falciparum (7)
	Human immunodeficiency virus 1 (4)
	Homo sapiens (3)
	Streptomyces (3)
	synthetic construct (3)
	Candida albicans (2)
	Candida parapsilosis (2)
	Cryphonectria parasitica (2)
	DG-75 Murine leukemia virus (2)

More...

Taxonomy

	Eukaryota (26)
	Bacteria (25)
	Riboviria (6)
	other sequences (3)

Experimental Method

X-RAY DIFFRACTION (32)

Polymer Entity Type

Protein (32)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (8)
	2.0 - 2.5 (7)
	2.5 - 3.0 (9)
	3.0 - 3.5 (3)

Release Date

	1990 - 1994 (5)
	1995 - 1999 (4)
	2000 - 2004 (4)
	2005 - 2009 (9)
	2010 - 2014 (5)
	2015 - 2019 (4)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (23)
	Transferases (1)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (23)
	Cyclic (18)

SCOP Classification

All beta proteins (22)

AllSelected

1 to 25 of 32 Structures

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1IZE \| pdb_00001ize	Download File View File

Crystal structure of Aspergillus oryzae Aspartic proteinase complexed with pepstatin

Kamitori, S., Ohtaki, A., Ino, H., Takeuchi, M.

(2003) J Mol Biology 326: 1503-1511

Released	2003-03-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus oryzae Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Pepstatin (protein) aspartic proteinase (protein)
Unique Ligands	MAN

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1LS5 \| pdb_00001ls5	Download File View File

Crystal structure of plasmepsin IV from P. falciparum in complex with pepstatin A

Asojo, O.A., Gulnik, S.V., Afonina, E., Yu, B., Ellman, J.A., Haque, T.S., Silva, A.M.

(2003) J Mol Biology 327: 173-181

Released	2002-06-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Plasmodium falciparum Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Pepstatin (protein) plasmepsin IV (protein)

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1LYB \| pdb_00001lyb	Download File View File

CRYSTAL STRUCTURES OF NATIVE AND INHIBITED FORMS OF HUMAN CATHEPSIN D: IMPLICATIONS FOR LYSOSOMAL TARGETING AND DRUG DESIGN

Baldwin, E.T., Bhat, T.N., Gulnik, S., Erickson, J.W.

(1993) Proc Natl Acad Sci U S A 90: 6796-6800

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Streptomyces argenteolus subsp. toyonakensis
Macromolecule	CATHEPSIN D (protein) PEPSTATIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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1M43 \| pdb_00001m43	Download File View File

Crystal structure of PMII in complex with pepstatin a to 2.4 A

Asojo, O.A., Silva, A.M., Gulnik, S.

To be published

Released	2002-07-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Plasmodium falciparum Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Pepstatin (protein) plasmepsin II (protein)

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1PSO \| pdb_00001pso	Download File View File

The crystal structure of human pepsin and its complex with pepstatin

Fujinaga, M., Chernaia, M.M., Tarasova, N., Mosimann, S.C., James, M.N.G.

(1995) Protein Sci 4: 960-972

Released	1995-04-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Streptomyces argenteolus subsp. toyonakensis
Macromolecule	PEPSIN 3A (protein) PEPSTATIN (protein)

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1QS8 \| pdb_00001qs8	Download File View File

Crystal structure of the P. vivax aspartic proteinase plasmepsin complexed with the inhibitor pepstatin A

Khazanovich Bernstein, N., Cherney, M.M., Yowell, C.A., Dame, J.B., James, M.N.G.

(2003) J Mol Biology 329: 505-524

Released	1999-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium vivax Streptomyces argenteolus subsp. toyonakensis
Macromolecule	PEPSTATIN A (protein) PLASMEPSIN (protein)
Unique Ligands	ACT

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1SME \| pdb_00001sme	Download File View File

PLASMEPSIN II, A HEMOGLOBIN-DEGRADING ENZYME FROM PLASMODIUM FALCIPARUM, IN COMPLEX WITH PEPSTATIN A

Silva, A.M., Lee, A.Y., Gulnik, S.V., Goldberg, D.E., Erickson, J.W.

(1996) Proc Natl Acad Sci U S A 93: 10034-10039

Released	1997-01-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium falciparum Streptomyces argenteolus subsp. toyonakensis
Macromolecule	PLASMEPSIN II (protein) Pepstatin (protein)

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1W6I \| pdb_00001w6i	Download File View File

plasmepsin II-pepstatin A complex

Lindberg, J., Johansson, P.-O., Rosenquist, A., Kvarnstroem, I., Vrang, L., Samuelsson, B., Unge, T.

To be published

Released	2006-07-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium falciparum Streptomyces argenteolus subsp. toyonakensis
Macromolecule	PEPSTATIN (protein) PLASMEPSIN 2 PRECURSOR (protein)

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1WKR \| pdb_00001wkr	Download File View File

Crystal structure of aspartic proteinase from Irpex lacteus

Fujimoto, Z., Fujii, Y., Kaneko, S., Kobayashi, H., Mizuno, H.

(2004) J Mol Biology 341: 1227-1235

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Irpex lacteus Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Polyporopepsin (protein) pepstatin (protein)
Unique Ligands	SO4

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1XDH \| pdb_00001xdh	Download File View File

Structure of plasmepsin II in complex with pepstatin A

Prade, L.

To be published

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Plasmodium falciparum Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Pepstatin (protein) Plasmepsin 2 (protein)

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2H6T \| pdb_00002h6t	Download File View File

Secreted aspartic proteinase (Sap) 3 from Candida albicans complexed with pepstatin A

Ruge, E., Borelli, C., Maskos, K., Huber, R.

(2007) Proteins 68: 738-748

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Candida albicans Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Candidapepsin-3 (protein) pepstatin A (protein)
Unique Ligands	ZN

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2QZX \| pdb_00002qzx	Download File View File

Secreted aspartic proteinase (Sap) 5 from Candida albicans

Lee, J.H., Ruge, E., Borelli, C., Maskos, K., Huber, R.

(2008) Proteins 72: 1308-1319

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Candida albicans Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Candidapepsin-5 (protein) Pepstatin (protein)

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2RMP \| pdb_00002rmp	Download File View File

RMP-pepstatin A complex

Yang, J., Quail, J.W.

(1999) Acta Crystallogr D Biol Crystallogr 55: 625-630

Released	1997-09-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rhizomucor miehei Streptomyces
Macromolecule	MUCOROPEPSIN (protein) PEPSTATIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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3EMY \| pdb_00003emy	Download File View File

Crystal structure of Trichoderma reesei aspartic proteinase complexed with pepstatin A

Nascimento, A.S., Krauchenco, S., Golubev, A.M., Gustchina, A., Wlodawer, A., Polikarpov, I.

(2008) J Mol Biology 382: 763-778

Released	2008-10-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces argenteolus subsp. toyonakensis Trichoderma reesei
Macromolecule	Pepstatin (protein) Trichoderma reesei Aspartic protease (protein)

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3FNT \| pdb_00003fnt	Download File View File

Crystal structure of pepstatin A bound histo-aspartic protease (HAP) from Plasmodium falciparum

Bhaumik, P., Gustchina, A., Wlodawer, A.

(2009) J Mol Biology 388: 520-540

Released	2009-05-12
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Plasmodium falciparum 3D7 Streptomyces argenteolus subsp. toyonakensis
Macromolecule	HAP protein (protein) Inhibitor, (IVA)VV(STA)A(STA) (protein)
Unique Ligands	EDO

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3FV3 \| pdb_00003fv3	Download File View File

Secreted aspartic protease 1 from Candida parapsilosis in complex with pepstatin A

Dostal, J., Brynda, J., Hruskova-Heidingsfeldova, O., Sieglova, I., Pichova, I., Rezacova, P.

(2009) J Struct Biol 167: 145-152

Released	2009-05-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Candida parapsilosis Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Sapp1p-secreted aspartic protease 1 (protein) pepstatin A (protein)
Unique Ligands	GOL, SO4

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3SM1 \| pdb_00003sm1	Download File View File

The crystal structure of XMRV protease complexed with pepstatin A

Li, M., Gustchina, A., Wlodawer, A.

(2011) FEBS J 278: 4413-4424

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	DG-75 Murine leukemia virus Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Pepstatin A (protein) gag-pro-pol polyprotein (protein)
Unique Ligands	FMT

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4EJD \| pdb_00004ejd	Download File View File

HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment 1F1 in the outside/top of flap

Tiefenbrunn, T., Stout, C.D.

(2013) ACS Chem Biol 8: 1223-1231

Released	2013-05-01
Method	X-RAY DIFFRACTION 1.103 Å
Organisms	Human immunodeficiency virus 1 Streptomyces argenteolus subsp. toyonakensis
Macromolecule	Protease (protein) pepstatin (protein)
Unique Ligands	1F1, BME, GOL

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4EJK \| pdb_00004ejk	Download File View File

HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment 1F1-N in the outside/top of flap

Tiefenbrunn, T., Stout, C.D.

(2013) ACS Chem Biol 8: 1223-1231

Released	2013-05-01
Method	X-RAY DIFFRACTION 1.794 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein) pepstatin (protein)
Unique Ligands	IOP

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4ER2 \| pdb_00004er2	Download File View File

The active site of aspartic proteinases

Bailey, D., Veerapandian, B., Cooper, J.B., Blundell, T.L.

(1984) FEBS Lett 174: 96-101

Released	1991-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica Streptomyces argenteolus subsp. toyonakensis
Macromolecule	ENDOTHIAPEPSIN (protein) PEPSTATIN (protein)
Unique Ligands	SO4

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4TVG \| pdb_00004tvg	Download File View File

HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment AK-2097 in the outside/top of flap

Tiefenbrunn, T., Kislukhin, A., Finn, M.G., Stout, C.D.

(2015) J Phys Chem B 119: 976-988

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Human immunodeficiency virus 1 synthetic construct
Macromolecule	HIV Protease (protein) Pepstatin (protein)
Unique Ligands	GOL, K97

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4Y9W \| pdb_00004y9w	Download File View File

Aspartic Proteinase Sapp2 Secreted from Candida Parapsilosis at 0.82 A Resolution.

Dostal, J., Brynda, J., Hruskova-Heidingsfeldova, O., Rezacova, P., Mareckova, L., Pichova, I.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2494-2504

Released	2016-11-30
Method	X-RAY DIFFRACTION 0.83 Å
Organisms	Candida parapsilosis synthetic construct
Macromolecule	Aspartic acid endopeptidase Sapp2 (protein) PEPTIDE (protein)

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5I70 \| pdb_00005i70	Download File View File

Crystal Structure of plasmepsin IV

Asojo, O.A.

To be published

Released	2016-03-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Actinomyces Plasmodium falciparum 7G8
Macromolecule	Pepstatin A (protein) Plasmepsin IV (protein)

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5LW1 \| pdb_00005lw1	Download File View File

Crystal structure of DARPin-DARPin rigid fusion, variant DD_232_11_D12 in complex JNK1a1 and JIP1 peptide

Wu, Y., Batyuk, A., Mittl, P.R., Honegger, A., Plueckthun, A.

(2018) J Mol Biology 430: 2128-2138

Released	2017-12-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	C-Jun-amino-terminal kinase-interacting protein 1 (protein) DD_232_11_D12 (protein) Mitogen-activated protein kinase 8 (protein) Pepstatin (protein)
Unique Ligands	ADN, SO4

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5N7Q \| pdb_00005n7q	Download File View File

CRYSTAL STRUCTURE OF MATURE CATHEPSIN D FROM THE TICK IXODES RICINUS (IRCD1) IN COMPLEX WITH THE INHIBITOR PEPSTATIN A

Brynda, J., Hanova, I., Hobizalova, R., Mares, M.

(2018) Cell Chem Biol 25: 318-329.e4

Released	2017-12-27
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Actinomycetes Ixodes ricinus
Macromolecule	PEPSTATIN A (protein) Putative cathepsin d (protein)
Unique Ligands	GOL, PEG

1 to 25 of 32 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1IZE | pdb_00001ize

1LS5 | pdb_00001ls5

1LYB | pdb_00001lyb

1M43 | pdb_00001m43

1PSO | pdb_00001pso

1QS8 | pdb_00001qs8

1SME | pdb_00001sme

1W6I | pdb_00001w6i

1WKR | pdb_00001wkr

1XDH | pdb_00001xdh

2H6T | pdb_00002h6t

2QZX | pdb_00002qzx

2RMP | pdb_00002rmp

3EMY | pdb_00003emy

3FNT | pdb_00003fnt

3FV3 | pdb_00003fv3

3SM1 | pdb_00003sm1

4EJD | pdb_00004ejd

4EJK | pdb_00004ejk

4ER2 | pdb_00004er2

4TVG | pdb_00004tvg

4Y9W | pdb_00004y9w

5I70 | pdb_00005i70

5LW1 | pdb_00005lw1

5N7Q | pdb_00005n7q