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QUERY: BIRD Name HAS EXACT PHRASE "=alpha-cyclodextrin"
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Search Summary This query matches 22 Structures.
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1 to 22 of 22 Structures
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1BTC | pdb_00001btc

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THREE-DIMENSIONAL STRUCTURE OF SOYBEAN BETA-AMYLASE DETERMINED AT 3.0 ANGSTROMS RESOLUTION: PRELIMINARY CHAIN TRACING OF THE COMPLEX WITH ALPHA-CYCLODEXTRIN

Mikami, B., Hehre, E.J., Sato, M., Katsube, Y., Hirose, M., Morita, Y., Sacchettini, J.C.

(1993) Biochemistry 32: 6836-6845

Released1993-10-31
Method
X-RAY DIFFRACTION 2 Å
Organisms
Glycine max
Macromolecule
BETA-AMYLASE (protein)
Unique LigandsBME, SO4
Unique branched monosaccharidesGLC
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1CXF | pdb_00001cxf

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COMPLEX OF A (D229N/E257Q) DOUBLE MUTANT CGTASE FROM BACILLUS CIRCULANS STRAIN 251 WITH MALTOTETRAOSE AT 120 K AND PH 9.1 OBTAINED AFTER SOAKING THE CRYSTAL WITH ALPHA-CYCLODEXTRIN

Knegtel, R.M.A., Strokopytov, B.V., Dijkstra, B.W.

(1995) J Biological Chem 270: 29256-29264

Released1995-12-15
Method
X-RAY DIFFRACTION 2.1 Å
Organisms
Niallia circulans
Macromolecule
CYCLODEXTRIN GLYCOSYLTRANSFERASE (protein)
Unique LigandsCA
Unique branched monosaccharidesGLC
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1VFM | pdb_00001vfm

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Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/alpha-cyclodextrin complex

Ohtaki, A., Mizuno, M., Tonozuka, T., Sakano, Y., Kamitori, S.

(2004) J Biological Chem 279: 31033-31040

Released2005-02-08
Method
X-RAY DIFFRACTION 2.9 Å
Organisms
Thermoactinomyces vulgaris
Macromolecule
Neopullulanase 2 (protein)
Unique LigandsCA
Unique branched monosaccharidesBGC, GLC
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2E8Z | pdb_00002e8z

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Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with alpha-cyclodextrin

Mikami, B., Malle, D., Utsumi, S., Iwamoto, H., Katsuya, Y.

To be published

Released2008-02-19
Method
X-RAY DIFFRACTION 2.2 Å
Organisms
Bacillus subtilis
Macromolecule
AmyX protein (protein)
Unique LigandsACT, CA, GOL
Unique branched monosaccharidesGLC
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2XFY | pdb_00002xfy

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Crystal structure of Barley Beta-Amylase complexed with alpha- cyclodextrin

Rejzek, M., Stevenson, C.E.M., Southard, A.M., Stanley, D., Denyer, K., Smith, A.M., Naldrett, M.J., Lawson, D.M., Field, R.A.

(2011) Mol Biosyst 7: 718

Released2010-12-01
Method
X-RAY DIFFRACTION 1.207 Å
Organisms
Hordeum vulgare
Macromolecule
BETA-AMYLASE (protein)
Unique LigandsEDO
Unique branched monosaccharidesGLC
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2Y5E | pdb_00002y5e

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BARLEY LIMIT DEXTRINASE IN COMPLEX WITH ALPHA-CYCLODEXTRIN

Vester-Christensen, M.B., Hachem, M.A., Svensson, B., Henriksen, A.

(2010) J Mol Biology 403: 739

Released2011-01-26
Method
X-RAY DIFFRACTION 2.49 Å
Organisms
Hordeum vulgare
Macromolecule
LIMIT DEXTRINASE (protein)
Unique LigandsCA, GOL, IOD
Unique branched monosaccharidesGLC
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2ZYM | pdb_00002zym

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Crystal structure of cyclo/maltodextrin-binding protein complexed with alpha-cyclodextrin

Matsumoto, M., Yamada, M., Kurakata, Y., Yoshida, H., Kamitori, S., Nishikawa, A., Tonozuka, T.

(2009) FEBS J 276: 3008-3019

Released2009-03-31
Method
X-RAY DIFFRACTION 1.8 Å
Organisms
Thermoactinomyces vulgaris
Macromolecule
Solute-binding protein (protein)
Unique branched monosaccharidesGLC
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3BCD | pdb_00003bcd

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Alpha-amylase B in complex with maltotetraose and alpha-cyclodextrin

Tan, T.-C., Mijts, B.N., Swaminathan, K., Patel, B.K.C., Divne, C.

(2008) J Mol Biology 378: 850-868

Released2008-04-22
Method
X-RAY DIFFRACTION 2.2 Å
Organisms
Halothermothrix orenii H 168
Macromolecule
Alpha amylase, catalytic region (protein)
Unique LigandsCA, NA
Unique branched monosaccharidesBGC, GLC
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3CK7 | pdb_00003ck7

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B. thetaiotaomicron SusD with alpha-cyclodextrin

Koropatkin, N.M., Martens, E.C., Gordon, J.I., Smith, T.J.

(2008) Structure 16: 1105-1115

Released2008-04-01
Method
X-RAY DIFFRACTION 2.1 Å
Organisms
Bacteroides thetaiotaomicron VPI-5482
Macromolecule
SusD (protein)
Unique LigandsCA
Unique branched monosaccharidesGLC
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3EDD | pdb_00003edd

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Structural base for cyclodextrin hydrolysis

Buedenbender, S., Schulz, G.E.

(2009) J Mol Biology 385: 606-617

Released2009-03-03
Method
X-RAY DIFFRACTION 2.65 Å
Organisms
Flavobacterium sp. 92
Macromolecule
Cyclomaltodextrinase (protein)
Unique LigandsCA
Unique branched monosaccharidesGLC
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3EDF | pdb_00003edf

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Structural base for cyclodextrin hydrolysis

Buedenbender, S., Schulz, G.E.

(2009) J Mol Biology 385: 606-617

Released2009-03-03
Method
X-RAY DIFFRACTION 1.65 Å
Organisms
Flavobacterium sp. 92
Macromolecule
Cyclomaltodextrinase (protein)
Unique LigandsCA, GOL
Unique branched monosaccharidesBGC, GLC
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3L2M | pdb_00003l2m

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X-ray Crystallographic Analysis of Pig Pancreatic Alpha-Amylase with Alpha-cyclodextrin

Larson, S.B., Day, J.S., McPherson, A.

(2010) Biochemistry 49: 3101-3115

Released2010-04-14
Method
X-RAY DIFFRACTION 1.97 Å
Organisms
Sus scrofa
Macromolecule
Pancreatic alpha-amylase (protein)
Unique LigandsCA, CL
Unique branched monosaccharidesGLC
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3ZST | pdb_00003zst

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GlgE isoform 1 from Streptomyces coelicolor with alpha-cyclodextrin bound

Syson, K., Stevenson, C.E.M., Rejzek, M., Fairhurst, S.A., Nair, A., Bruton, C.J., Field, R.A., Chater, K.F., Lawson, D.M., Bornemann, S.

(2011) J Biological Chem 286: 38298

Released2011-09-14
Method
X-RAY DIFFRACTION 2.3 Å
Organisms
Streptomyces coelicolor
Macromolecule
PUTATIVE GLUCANOHYDROLASE PEP1A GLGE ISOFORM 1 (protein)
Unique LigandsEDO
Unique branched monosaccharidesGLC
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3ZT6 | pdb_00003zt6

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GlgE isoform 1 from Streptomyces coelicolor with alpha-cyclodextrin and maltose bound

Syson, K., Stevenson, C.E.M., Rejzek, M., Fairhurst, S.A., Nair, A., Bruton, C.J., Field, R.A., Chater, K.F., Lawson, D.M., Bornemann, S.

(2011) J Biological Chem 286: 38298

Released2011-09-14
Method
X-RAY DIFFRACTION 2.19 Å
Organisms
Streptomyces coelicolor
Macromolecule
PUTATIVE GLUCANOHYDROLASE PEP1A (protein)
Unique branched monosaccharidesGLC
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4D5B | pdb_00004d5b

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Crystal structure of CymA from Klebsiella oxytoca

van den Berg, B., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.

(2015) Proc Natl Acad Sci U S A 112: E2991-E2999

Released2015-06-03
Method
X-RAY DIFFRACTION 1.702 Å
Organisms
Klebsiella oxytoca
Macromolecule
CYMA (protein)
Unique LigandsC8E
Unique branched monosaccharidesGLC
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4D5D | pdb_00004d5d

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Crystal structure of CymA from Klebsiella oxytoca

van den Berg, B., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.

(2015) Proc Natl Acad Sci U S A 112: E2991-E2999

Released2015-06-03
Method
X-RAY DIFFRACTION 1.902 Å
Organisms
Klebsiella oxytoca
Macromolecule
CYMA (protein)
Unique LigandsC8E
Unique branched monosaccharidesGLC
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4FEM | pdb_00004fem

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Structure of SusE with alpha-cyclodextrin

Koropatkin, N.M., Cameron, E.A., Martens, E.C.

(2012) J Biological Chem 287: 34614-34625

Released2012-08-29
Method
X-RAY DIFFRACTION 2.5 Å
Organisms
Bacteroides thetaiotaomicron VPI-5482
Macromolecule
Outer membrane protein SusE (protein)
Unique LigandsEDO
Unique branched monosaccharidesGLC
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5E6Y | pdb_00005e6y

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Crystal structure of E.Coli branching enzyme in complex with alpha cyclodextrin

Feng, L., Nosrati, M., Geiger, J.H.

(2016) Acta Crystallogr D Struct Biol 72: 641-647

Released2015-12-16
Method
X-RAY DIFFRACTION 2.6 Å
Organisms
Escherichia coli O139:H28 str. E24377A
Macromolecule
1,4-alpha-glucan branching enzyme GlgB (protein)
Unique LigandsGOL
Unique branched monosaccharidesGLC
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5MTU | pdb_00005mtu

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Maltodextrin binding protein MalE1 from L. casei BL23 bound to alpha-cyclodextrin

Homburg, C., Bommer, M., Wuttge, S., Hobe, C., Beck, S., Dobbek, H., Deutscher, J., Licht, A., Schneider, E.

(2017) Mol Microbiol 105: 25-45

Released2017-07-05
Method
X-RAY DIFFRACTION 0.999 Å
Organisms
Lacticaseibacillus casei BL23
Macromolecule
MalE1 (protein)
Unique branched monosaccharidesGLC
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5YNA | pdb_00005yna

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Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM alpha-cyclodextrin

Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.

(2018) Acta Crystallogr D Struct Biol 74: 1115-1123

Released2018-10-24
Method
X-RAY DIFFRACTION 1.96 Å
Organisms
Klebsiella pneumoniae
Macromolecule
PulA protein (protein)
Unique LigandsACT, CA, GOL, PEG
Unique branched monosaccharidesGLC
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5YNE | pdb_00005yne

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Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM alpha-cyclodextrin

Saka, N., Iwamoto, H., Takahashi, N., Mizutani, K., Mikami, B.

(2018) Acta Crystallogr D Struct Biol 74: 1115-1123

Released2018-10-24
Method
X-RAY DIFFRACTION 2.199 Å
Organisms
Klebsiella pneumoniae
Macromolecule
PulA protein (protein)
Unique LigandsCA, GOL, PEG
Unique branched monosaccharidesGLC
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9JLT | pdb_00009jlt

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GH57 family amylopullulanase D352N mutant from Aquifex aeolicus complex with alpha-cyclodextrin

Zhu, Z.M., Wang, W.W., Li, M.J., Xu, Q., Zhou, H., Huang, L.Q., Wang, Q.S., Yu, F.

(2025) J Struct Biol 217: 108199-108199

Released2025-06-04
Method
X-RAY DIFFRACTION 1.56 Å
Organisms
Aquifex aeolicus VF5
Macromolecule
Glycoside hydrolase family 57 N-terminal domain-containing protein (protein)
Unique LigandsGOL
Unique branched monosaccharidesGLC
1 to 22 of 22 Structures
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