RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = 22B

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Natronomonas pharaonis (5)
	Natronomonas pharaonis DSM 2160 (4)
	Halobacterium sp. AUS-2 (3)
	Haloarcula vallismortis (2)
	Natrinema thermotolerans (1)

Taxonomy

Archaea (15)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (10)
	2015 - 2019 (2)

Membrane Protein Annotation

	MemProtMD (11)
	PDBTM (11)
	OPM (4)
	mpstruc (4)

Symmetry Type

	Cyclic (15)
	Asymmetric (1)

SCOP Classification

Membrane and cell surface proteins and peptides (14)

AllSelected

1 to 15 of 15 Structures

Page 1 of 1

Sort by

Explore in 3D

2EI4 \| pdb_00002ei4	Download File View File

Trimeric complex of archaerhodopsin-2

Kouyama, T.

(2008) J Mol Biology 375: 1267-1281

Released	2008-01-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium sp. AUS-2
Macromolecule	Archaerhodopsin-2 (protein)
Unique Ligands	22B, GLC, L2P, RET

Explore in 3D

2Z55 \| pdb_00002z55	Download File View File

Bacterioruberin in the trimeric structure of archaerhodopsin-2

Kouyama, T., Yoshimura, K.

(2008) J Mol Biology 375: 1267-1281

Released	2008-01-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Halobacterium sp. AUS-2
Macromolecule	Archaerhodopsin-2 (protein)
Unique Ligands	22B, L2P, RET
Unique branched monosaccharides	GAL, GLC, MAN

Explore in 3D

3A7K \| pdb_00003a7k	Download File View File

Crystal structure of halorhodopsin from Natronomonas pharaonis

Kouyama, T.

(2010) J Mol Biology 396: 564-579

Released	2009-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Natronomonas pharaonis DSM 2160
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, CL, L1P, L2P, L3P, RET

Explore in 3D

3ABW \| pdb_00003abw	Download File View File

Crystal structure of pharaonis halorhodopsin in complex with azide ion

Kouyama, T., Kanada, S.

To be published

Released	2011-02-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Natronomonas pharaonis DSM 2160
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, AZI, L3P, RET

Explore in 3D

3QBG \| pdb_00003qbg	Download File View File

Anion-free blue form of pharaonis halorhodopsin

Kouyama, T., Kanada, S.

(2011) J Mol Biology 413: 162-176

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Natronomonas pharaonis
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, BNG, RET

Explore in 3D

3QBI \| pdb_00003qbi	Download File View File

Crystal structure of an anion-free yellow form of pharaonis halorhodopsin

Kouyama, T., Kanada, S.

(2011) J Mol Biology 413: 162-176

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Natronomonas pharaonis
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, BNG, RET

Explore in 3D

3QBK \| pdb_00003qbk	Download File View File

Bromide-bound form of pharaonis halorhodopsin

Kouyama, T., Kanada, S.

(2011) J Mol Biology 413: 162-176

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Natronomonas pharaonis
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, BR, RET

Explore in 3D

3QBL \| pdb_00003qbl	Download File View File

Pharaonis halorhodopsin complexed with nitrate

Kouyama, T., Kanada, S.

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Natronomonas pharaonis
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, NO3, RET

Explore in 3D

3VVK \| pdb_00003vvk	Download File View File

An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin

Kouyama, T., Nakanishi, T.

(2013) Biophys J 104: 377-385

Released	2013-06-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Natronomonas pharaonis
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, AZI, BNG, L3P, RET

Explore in 3D

3WQJ \| pdb_00003wqj	Download File View File

Crystal structure of archaerhodopsin-2 at 1.8 angstrom resolution

Kouyama, T.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2692-2701

Released	2014-10-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium sp. AUS-2
Macromolecule	Archaerhodopsin-2 (protein)
Unique Ligands	22B, L2P, L3P, L4P, RET, SO4, SQL

Explore in 3D

4FBZ \| pdb_00004fbz	Download File View File

Crystal structure of deltarhodopsin from Haloterrigena thermotolerans

Kouyama, T.

(2013) Proteins 81: 1585-1592

Released	2013-05-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Natrinema thermotolerans
Macromolecule	deltarhodopsin (protein)
Unique Ligands	22B, BNG, L2P, RET, SO4, SQL

Explore in 3D

4JR8 \| pdb_00004jr8	Download File View File

Crystal structure of cruxrhodopsin-3 from Haloarcula vallismortis at 2.3 angstrom resolution

Kouyama, T., Chan, S.K.

(2014) PLoS One 9: e108362-e108362

Released	2014-03-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haloarcula vallismortis
Macromolecule	Cruxrhodopsin-3 (protein)
Unique Ligands	22B, RET

Explore in 3D

4L35 \| pdb_00004l35	Download File View File

Crystal structure of cruxrhodopsin-3 at pH5 from Haloarcula vallismortis at 2.1 angstrom resolution

Kouyama, T., Chan, S.K.

(2014) PLoS One 9: e108362-e108362

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Haloarcula vallismortis
Macromolecule	Cruxrhodopsin-3 (protein)
Unique Ligands	22B, RET

Explore in 3D

5B0W \| pdb_00005b0w	Download File View File

Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions

Kouyama, T., Chan, S.K.

(2016) Biochemistry 55: 4092-4104

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Natronomonas pharaonis DSM 2160
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, BNG, ILE, L3P, RET

Explore in 3D

5ETZ \| pdb_00005etz	Download File View File

Structure of the all-trans isomer of pharaonis halorhodopsin in the absence of halide ions

Kouyama, T.

(2016) Biochemistry 55: 4092-4104

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Natronomonas pharaonis DSM 2160
Macromolecule	Halorhodopsin (protein)
Unique Ligands	22B, BNG, L3P, RET

1 to 15 of 15 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2EI4 | pdb_00002ei4

Trimeric complex of archaerhodopsin-2

2Z55 | pdb_00002z55

Bacterioruberin in the trimeric structure of archaerhodopsin-2

3A7K | pdb_00003a7k

Crystal structure of halorhodopsin from Natronomonas pharaonis

3ABW | pdb_00003abw

Crystal structure of pharaonis halorhodopsin in complex with azide ion

3QBG | pdb_00003qbg

Anion-free blue form of pharaonis halorhodopsin

3QBI | pdb_00003qbi

Crystal structure of an anion-free yellow form of pharaonis halorhodopsin

3QBK | pdb_00003qbk

Bromide-bound form of pharaonis halorhodopsin

3QBL | pdb_00003qbl

Pharaonis halorhodopsin complexed with nitrate

3VVK | pdb_00003vvk

An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin

3WQJ | pdb_00003wqj

Crystal structure of archaerhodopsin-2 at 1.8 angstrom resolution

4FBZ | pdb_00004fbz

Crystal structure of deltarhodopsin from Haloterrigena thermotolerans

4JR8 | pdb_00004jr8

Crystal structure of cruxrhodopsin-3 from Haloarcula vallismortis at 2.3 angstrom resolution

4L35 | pdb_00004l35

Crystal structure of cruxrhodopsin-3 at pH5 from Haloarcula vallismortis at 2.1 angstrom resolution

5B0W | pdb_00005b0w

Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions

5ETZ | pdb_00005etz

Structure of the all-trans isomer of pharaonis halorhodopsin in the absence of halide ions

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2EI4 | pdb_00002ei4

2Z55 | pdb_00002z55

3A7K | pdb_00003a7k

3ABW | pdb_00003abw

3QBG | pdb_00003qbg

3QBI | pdb_00003qbi

3QBK | pdb_00003qbk

3QBL | pdb_00003qbl

3VVK | pdb_00003vvk

3WQJ | pdb_00003wqj

4FBZ | pdb_00004fbz

4JR8 | pdb_00004jr8

4L35 | pdb_00004l35

5B0W | pdb_00005b0w

5ETZ | pdb_00005etz