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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 78N

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Streptococcus thermophilus LMG 18311 (10)
	Escherichia coli K-12 (4)
	Pseudomonas aeruginosa PAO1 (4)
	Streptococcus thermophilus (2)
	synthetic construct (2)
	Halalkalibacterium halodurans C-125 (1)
	Pseudomonas aeruginosa (1)
	Shewanella oneidensis MR-1 (1)

Taxonomy

	Bacteria (23)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (12)
	2.5 - 3.0 (7)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (12)
	2020 - 2024 (1)

Enzyme Classification Name

Transferases (4)

Membrane Protein Annotation

	MemProtMD (23)
	PDBTM (23)
	mpstruc (16)
	OPM (8)

Symmetry Type

	Asymmetric (19)
	Cyclic (4)

SCOP Classification

Membrane and cell surface proteins and peptides (5)

AllSelected

1 to 23 of 23 Structures

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3ZE3 \| pdb_00003ze3	Download File View File

Crystal structure of the integral membrane diacylglycerol kinase - delta7

Li, D., Pye, V.E., Lyons, J.A., Vogeley, L., Aragao, D., Caffrey, M.

(2013) Nature 497: 521

Released	2013-05-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli K-12
Macromolecule	DIACYLGLYCEROL KINASE (protein)
Unique Ligands	78M, 78N, ACT, FLC, NA, ZN

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4AFK \| pdb_00004afk	Download File View File

In meso structure of alginate transporter, AlgE, from Pseudomonas aeruginosa, PAO1

Tan, J., Pye, V.E., Aragao, D., Caffrey, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2054

Released	2013-02-06
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	ALGINATE PRODUCTION PROTEIN ALGE (protein)
Unique Ligands	78M, 78N, CA, FLC, LDA, NA, PE5

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4AZL \| pdb_00004azl	Download File View File

In meso structure of alginate transporter, AlgE, from Pseudomoas aeruginosa, PAO1, crystal form 2.

Tan, J., Pye, V.E., Aragao, D., Caffrey, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2054

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	ALGINATE PRODUCTION PROTEIN ALGE (protein)
Unique Ligands	78M, 78N, CA

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4B61 \| pdb_00004b61	Download File View File

In meso structure of alginate transporter, AlgE, from Pseudomoas aeruginosa, PAO1. Crystal form 3.

Tan, J., Pye, V.E., Aragao, D., Caffrey, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2054

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	ALGINATE PRODUCTION PROTEIN ALGE (protein)
Unique Ligands	78M, 78N, ACT, CU, LDA, MG

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4BRB \| pdb_00004brb	Download File View File

Crystal structure of the integral membrane enzyme DgkA-ref, delta 7

Li, D., Caffrey, M.

(2014) Sci Rep 4: 5806

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli K-12
Macromolecule	DIACYLGLYCEROL KINASE (protein)
Unique Ligands	78N, ACT, FLC, ZN

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4D2B \| pdb_00004d2b	Download File View File

Structure of a ligand free POT family peptide transporter

Lyons, J.A., Parker, J.L., Solcan, N., Brinth, A., Li, D., Shah, S.T.A., Caffrey, M., Newstead, S.

(2014) EMBO Rep 15: 886

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	DI-OR TRIPEPTIDE\:H+ SYMPORTER (protein)
Unique Ligands	78M, 78N, PO4

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4D2C \| pdb_00004d2c	Download File View File

Structure of a di peptide bound POT family peptide transporter

Lyons, J.A., Parker, J.L., Solcan, N., Brinth, A., Li, D., Shah, S.T.A., Caffrey, M., Newstead, S.

(2014) EMBO Rep 15: 886

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, 78N, ALA, PHE, PO4

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4D2D \| pdb_00004d2d	Download File View File

Structure of a tri peptide bound POT family peptide transporter

Lyons, J.A., Parker, J.L., Solcan, N., Brinth, A., Li, D., Shah, S.T.A., Caffrey, M., Newstead, S.

(2014) EMBO Rep 15: 886

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.522 Å
Organisms	Streptococcus thermophilus LMG 18311 synthetic construct
Macromolecule	ALANINE-TRIPEPTIDE (protein) DI-OR TRIPEPTIDE\:H+ SYMPORTER (protein)
Unique Ligands	78M, 78N, PO4

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4D2E \| pdb_00004d2e	Download File View File

Crystal structure of an integral membrane kinase - v2.3

Li, D., Boland, C., Caffrey, M.

(2014) Cell Mol Life Sci 71: 4895

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Escherichia coli K-12
Macromolecule	DIACYLGLYCEROL KINASE (protein)
Unique Ligands	78M, 78N, FLC, NA, ZN

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4US4 \| pdb_00004us4	Download File View File

Crystal Structure of the Bacterial NSS Member MhsT in an Occluded Inward-Facing State (lipidic cubic phase form)

Malinauskaite, L., Quick, M., Reinhard, L., Lyons, J.A., Yano, H., Javitch, J.A., Nissen, P.

(2014) Nat Struct Mol Biol 21: 1006

Released	2014-09-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	TRANSPORTER (protein)
Unique Ligands	78M, 78N, NA, TRP

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4UVM \| pdb_00004uvm	Download File View File

In meso crystal structure of the POT family transporter PepTSo

Lyons, J.A., Solcan, N., Caffrey, M., Newstead, S.

(2015) Structure 23: 290

Released	2015-02-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	GLUTATHIONE UPTAKE TRANSPORTER (protein)
Unique Ligands	78M, 78N

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4XNL \| pdb_00004xnl	Download File View File

X-ray structure of AlgE2

Ma, P., Huang, C.Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1238-1256

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	78M, 78N, CA, LDA, PE5

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5DWK \| pdb_00005dwk	Download File View File

Diacylglycerol Kinase solved by multi crystal multi orientation native SAD

Weinert, T., Olieric, V., Finke, A.D., Li, D., Caffrey, M., Wang, M.

(2016) Acta Crystallogr D Struct Biol 72: 421-429

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Escherichia coli K-12
Macromolecule	Diacylglycerol kinase (protein)
Unique Ligands	78M, 78N, ACT, CIT, NA, ZN

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5OXK \| pdb_00005oxk	Download File View File

PepTSt in complex with dipeptide Ala-Gln

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	1PE, 78M, 78N, ALA, GLN, PO4

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5OXL \| pdb_00005oxl	Download File View File

PepTSt in complex with dipeptide Ala-Leu

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	1PE, 78M, 78N, ALA, EPE, LEU, PO4

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5OXM \| pdb_00005oxm	Download File View File

PepTSt in complex with dipeptide Asp-Glu

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.295 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, 78N, ASP, GLU, PO4

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5OXN \| pdb_00005oxn	Download File View File

PepTSt in complex with dipeptide Phe-Ala

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.196 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, 78N, ALA, NA, PHE, PO4

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5OXO \| pdb_00005oxo	Download File View File

PepTSt apo structure

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	1PE, 78M, 78N, CIT, NA

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5OXP \| pdb_00005oxp	Download File View File

PepTSt in occluded conformation with phosphate ion bound

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.372 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	1PE, 78M, 78N, PO4

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5OXQ \| pdb_00005oxq	Download File View File

PepTSt in complex with HEPES (300 mM)

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.195 Å
Organisms	Streptococcus thermophilus
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	1PE, 78M, 78N, EPE, NA, PO4

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6EIA \| pdb_00006eia	Download File View File

PepTSt in complex with HEPES (100 mM)

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) Structure 26: 467-476.e4

Released	2018-02-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus thermophilus
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, 78N, EPE, PG4, PO4

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6GHJ \| pdb_00006ghj	Download File View File

PepTSt in complex with tripeptide Phe-Ala-Gln

Martinez Molledo, M., Quistgaard, E.M., Loew, C.

(2018) FEBS Lett 592: 3239-3247

Released	2018-09-19
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Streptococcus thermophilus LMG 18311 synthetic construct
Macromolecule	Di-or tripeptide:H+ symporter (protein) PHE-ALA-GLN (protein)
Unique Ligands	1PE, 78M, 78N, EPE, NA, PO4

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8PZ4 \| pdb_00008pz4	Download File View File

Structure of alginate transporter, AlgE, solved at wavelength 2.755 A

Duman, R., El Omari, K., Mykhaylyk, V., Orr, C., Wagner, A., Vogeley, L., Brown, D.G.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	78M, 78N, CA, FLC, LDA, PE5, SO4

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3ZE3 | pdb_00003ze3

4AFK | pdb_00004afk

4AZL | pdb_00004azl

4B61 | pdb_00004b61

4BRB | pdb_00004brb

4D2B | pdb_00004d2b

4D2C | pdb_00004d2c

4D2D | pdb_00004d2d

4D2E | pdb_00004d2e

4US4 | pdb_00004us4

4UVM | pdb_00004uvm

4XNL | pdb_00004xnl

5DWK | pdb_00005dwk

5OXK | pdb_00005oxk

5OXL | pdb_00005oxl

5OXM | pdb_00005oxm

5OXN | pdb_00005oxn

5OXO | pdb_00005oxo

5OXP | pdb_00005oxp

5OXQ | pdb_00005oxq

6EIA | pdb_00006eia

6GHJ | pdb_00006ghj

8PZ4 | pdb_00008pz4