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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 403 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (403)

Scientific Name of Source Organism

	Homo sapiens (249)
	synthetic construct (37)
	Saccharomyces cerevisiae (16)
	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (10)
	Escherichia coli DH1 (8)
	Xenopus laevis (8)
	Saccharomyces cerevisiae S288C (7)
	Candida albicans SC5314 (5)
	Mus musculus (5)
	Aspergillus fumigatus Af293 (3)

More...

Taxonomy

	Eukaryota (294)
	other sequences (37)
	Eukaryota (eukaryotes) (24)
	Bacteria (19)
	Riboviria (3)
	unclassified sequences (2)
	Archaea (1)
	Riboviria (RNA viruses and viroids) (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (367)
	SOLUTION NMR (23)
	ELECTRON MICROSCOPY (13)

Polymer Entity Type

Protein (403)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (66)
	1.5 - 2.0 (136)
	2.0 - 2.5 (100)
	2.5 - 3.0 (56)
	3.0 - 3.5 (10)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (4)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (42)
	2010 - 2014 (83)
	2015 - 2019 (111)
	2020 - 2024 (156)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (98)
	Lyases (24)
	Hydrolases (13)
	Oxidoreductases (16)
	Isomerases (7)
	Ligases (4)

Symmetry Type

	Asymmetric (339)
	Cyclic (75)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a+b) (66)
	All beta proteins (10)
	Alpha and beta proteins (a/b) (4)
	Artifacts (5)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 403 Polymer Entities

Page 1 of 17

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1E0Z: Entity 1	Download File View File

[2Fe-2S]-Ferredoxin from Halobacterium salinarum

Schweimer, K., Marg, B., Oesterhelt, D., Roesch, P., Sticht, H.

(2005) Biochemistry 44: 29

Released	2001-04-12
Method	SOLUTION NMR
Chain ID	A
Organism	Halobacterium salinarum
Macromolecule	FERREDOXIN

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1E6I: Entity 2	Download File View File

Bromodomain from GCN5 complexed with acetylated H4 peptide

Owen, D.J., Travers, A.A., Evans, P.R.

(2000) EMBO J 19: 6141

Released	2000-11-24
Method	X-RAY DIFFRACTION 1.87 Å
Chain ID	B [auth P]
Organism	Saccharomyces cerevisiae
Macromolecule	HISTONE H4

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1JM4: Entity 1	Download File View File

NMR Structure of P/CAF Bromodomain in Complex with HIV-1 Tat Peptide

Mujtaba, S., He, Y., Zeng, L., Farooq, A., Carlson, J.E., Ott, M., Verdin, E., Zhou, M.-M.

(2002) Mol Cell 9: 575-586

Released	2002-07-17
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)
Macromolecule	HIV-1 Tat Peptide

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1JSP: Entity 1	Download File View File

NMR Structure of CBP Bromodomain in complex with p53 peptide

He, Y., Mujtaba, S., Zeng, L., Yan, S., Zhou, M.-M.

(2004) Mol Cell 13: 251-263

Released	2002-08-17
Method	SOLUTION NMR
Chain ID	A
Organism	Homo sapiens
Macromolecule	tumor protein p53

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1MA3: Entity 2	Download File View File

Structure of a Sir2 enzyme bound to an acetylated p53 peptide

Avalos, J.L., Celic, I., Muhammad, S., Cosgrove, M.S., Boeke, J.D., Wolberger, C.

(2002) Mol Cell 10: 523-535

Released	2002-10-16
Method	X-RAY DIFFRACTION 2 Å
Chain ID	B
Organism	Homo sapiens
Macromolecule	Cellular tumor antigen p53

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1Q1A: Entity 2	Download File View File

Structure of the yeast Hst2 protein deacetylase in ternary complex with 2'-O-acetyl ADP ribose and histone peptide

Zhao, K., Chai, X., Marmorstein, R.

(2003) Structure 11: 1403-1411

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	B
Organism	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Histone H4

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1S5P: Entity 2	Download File View File

Structure and substrate binding properties of cobB, a Sir2 homolog protein deacetylase from Eschericia coli.

Zhao, K., Chai, X., Marmorstein, R.

(2004) J Mol Biology 337: 731-741

Released	2004-03-23
Method	X-RAY DIFFRACTION 1.96 Å
Chain ID	B
Macromolecule	HISTONE H4 (RESIDUES 12-19)

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1SZC: Entity 2	Download File View File

Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD+-dependent Sir2 histone/protein deacetylases

Zhao, K., Harshaw, R., Chai, X., Marmorstein, R.

(2004) Proc Natl Acad Sci U S A 101: 8563-8568

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.75 Å
Chain ID	B
Organism	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Histone H4 peptide

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1SZD: Entity 2	Download File View File

Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD+-dependent Sir2 histone/protein deacetylases

Zhao, K., Harshaw, R., Chai, X., Marmorstein, R.

(2004) Proc Natl Acad Sci U S A 101: 8563-8568

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	B
Organism	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Histone H4 peptide

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1YC5: Entity 2	Download File View File

Sir2-p53 peptide-nicotinamide

Avalos, J.L., Bever, M.K., Wolberger, C.

(2005) Mol Cell 17: 855-868

Released	2005-04-26
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	B
Organism	Homo sapiens
Macromolecule	Cellular tumor antigen p53 peptide

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2B4D: Entity 2	Download File View File

SSAT+COA+SP- SP disordered

Bewley, M.C., Graziano, V., Jiang, J.S., Matz, E., Studier, F.W., Pegg, A.P., Coleman, C.S., Flanagan, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2006) Proc Natl Acad Sci U S A 103: 2063-2068

Released	2006-01-17
Method	X-RAY DIFFRACTION 2 Å
Chain ID	B
Organism	Homo sapiens
Macromolecule	Diamine acetyltransferase 1

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2B5G: Entity 2	Download File View File

Wild Type SSAT- 1.7A structure

Bewley, M.C., Graziano, V., Jiang, J.S., Matz, E., Studier, F.W., Pegg, A.P., Coleman, C.S., Flanagan, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2006) Proc Natl Acad Sci U S A 103: 2063-2068

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	B
Organism	Homo sapiens
Macromolecule	Diamine acetyltransferase 1

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2C1J: Entity 2	Download File View File

Molecular basis for the recognition of phosphorylated and phosphoacetylated histone H3 by 14-3-3

Welburn, J.P.I., Macdonald, N., Noble, M.E.M., Nguyen, A., Yaffe, M.B., Clynes, D., Moggs, J.G., Orphanides, G., Thomson, S., Edmunds, J.W., Clayton, A.L., Endicott, J.A., Mahadevan, L.C.

(2005) Mol Cell 20: 199

Released	2005-11-02
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	C, D
Organism	Homo sapiens
Macromolecule	HISTONE H3 ACETYLPHOSPHOPEPTIDE

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2DVQ: Entity 2	Download File View File

Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide

Nakamura, Y., Umehara, T., Shirouzu, M., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2010) J Biological Chem 285: 7610-7618

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.04 Å
Chain IDs	D [auth P], E [auth Q]
Organism	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	histone H4

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2DVR: Entity 2	Download File View File

Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide

Nakamura, Y., Umehara, T., Shirouzu, M., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2010) J Biological Chem 285: 7610-7618

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	D [auth P], E [auth Q]
Organism	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	histone H4

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2DVS: Entity 2	Download File View File

Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide

Nakamura, Y., Umehara, T., Shirouzu, M., Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2010) J Biological Chem 285: 7610-7618

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.04 Å
Chain IDs	D [auth P], E [auth Q]
Macromolecule	histone H4

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2E3K: Entity 2	Download File View File

Crystal structure of the human Brd2 second bromodomain in complexed with the acetylated histone H4 peptide

Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	E [auth Q], F [auth R]
Organism	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	15-mer peptide from Histone H4

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2GIV: Entity 1	Download File View File

Human MYST histone acetyltransferase 1

Min, J., Wu, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

To be published

Released	2006-04-11
Method	X-RAY DIFFRACTION 1.94 Å
Chain ID	A
Organism	Homo sapiens
Macromolecule	Probable histone acetyltransferase MYST1

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2H2D: Entity 2	Download File View File

The Structural Basis for Sirtuin Substrate Affinity

Cosgrove, M.S., Wolberger, C.

(2006) Biochemistry 45: 7511-7521

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	B
Organism	Homo sapiens
Macromolecule	Cellular tumor antigen p53 peptide

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2H2G: Entity 2	Download File View File

The Structural Basis of Sirtuin substrate affinity

Cosgrove, M.S., Wolberger, C.

(2006) Biochemistry 45: 7511-7521

Released	2006-11-28
Method	X-RAY DIFFRACTION 1.63 Å
Chain ID	B
Organism	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	HISTONE H3 PEPTIDE