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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 760 Structures.

Refinements

Structure Determination Methodology

experimental (760)

Scientific Name of Source Organism

	Homo sapiens (628)
	Severe acute respiratory syndrome coronavirus 2 (118)
	Lama glama (11)
	Bacillus subtilis (5)
	Moorella thermoacetica (4)
	synthetic construct (4)
	Bacillus subtilis subsp. subtilis str. 168 (3)
	Acetivibrio thermocellus (1)
	Moorella thermoacetica ATCC 39073 (1)

Taxonomy

	Eukaryota (628)
	Riboviria (118)
	Bacteria (14)
	other sequences (4)

Experimental Method

X-RAY DIFFRACTION (760)

Polymer Entity Type

	Protein (760)
	DNA (11)

Refinement Resolution (Å)

	1.0 - 1.5 (207)
	1.5 - 2.0 (361)
	2.0 - 2.5 (133)
	2.5 - 3.0 (39)
	3.0 - 3.5 (15)
	3.5 - 4.0 (4)
	> 4.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (27)
	2015 - 2019 (429)
	2020 - 2024 (301)

Enzyme Classification Name

	Hydrolases (566)
	Transferases (27)
	Isomerases (18)
	Oxidoreductases (10)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (733)
	Cyclic (20)
	Dihedral (8)

SCOP Classification

	Alpha and beta proteins (a+b) (376)
	All beta proteins (108)
	All alpha proteins (69)
	Alpha and beta proteins (a/b) (4)
	Artifacts (21)
	Small proteins (7)

AllSelected

1 to 25 of 760 Structures

Page 1 of 31

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2I5B \| pdb_00002i5b	Download File View File

The crystal structure of an ADP complex of Bacillus subtilis pyridoxal kinase provides evidence for the parralel emergence of enzyme activity during evolution

Newman, J.A., Das, S.K., Sedelnikova, S.E., Rice, D.W.

(2006) J Mol Biology 363: 520-530

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus subtilis
Macromolecule	Phosphomethylpyrimidine kinase (protein)
Unique Ligands	ADP

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2VPT \| pdb_00002vpt	Download File View File

Clostridium thermocellum family 3 carbohydrate esterase

Correia, M.A.S., Prates, J.A.M., Bras, J., Fontes, C.M.G.A., Newman, J.A., Lewis, R.J., Gilbert, H.J., Flint, J.E.

(2008) J Mol Biology 379: 64

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus
Macromolecule	LIPOLYTIC ENZYME (protein)
Unique Ligands	CA

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2VY9 \| pdb_00002vy9	Download File View File

Molecular architecture of the stressosome, a signal integration and transduction hub

Marles-Wright, J., Grant, T., Delumeau, O., van Duinen, G., Firbank, S.J., Lewis, P.J., Murray, J.W., Newman, J.A., Quin, M.B., Race, P.R., Rohou, A., Tichelaar, W., van Heel, M., Lewis, R.J.

(2008) Science 322: 92

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (protein)

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3K8Z \| pdb_00003k8z	Download File View File

Crystal Structure of Gudb1 a decryptified secondary glutamate dehydrogenase from B. subtilis

Gunka, K., Newman, J.A., Commichau, F.M., Herzberg, C., Rodrigues, C., Hewitt, L., Lewis, R.J., Stulke, J.

(2010) J Mol Biology 400: 815-827

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	NAD-specific glutamate dehydrogenase (protein)

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3K92 \| pdb_00003k92	Download File View File

Crystal structure of a E93K mutant of the majour Bacillus subtilis glutamate dehydrogenase RocG

Gunka, K., Newman, J.A., Commichau, F.M., Herzberg, C., Rodrigues, C., Hewitt, L., Lewis, R.J., Stulke, J.

(2010) J Mol Biology 400: 815-827

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	NAD-specific glutamate dehydrogenase (protein)
Unique Ligands	PEG

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3ZKC \| pdb_00003zkc	Download File View File

Crystal structure of the master regulator for biofilm formation SinR in complex with DNA.

Newman, J.A., Rodrigues, C., Lewis, R.J.

(2013) J Biological Chem 288: 10766

Released	2013-03-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	HTH-TYPE TRANSCRIPTIONAL REGULATOR SINR (protein) 5'-D(APAPAPGPTPTPCPTPCPTPTPTPAPGP APGPAPAPCPAPAP)-3' (nucleic acid) 5'-D(APTPTPGPTPTPCPTPCPTPAPAPAPGP APGPAPAPCPTPTP)-3' (nucleic acid)

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3ZP5 \| pdb_00003zp5	Download File View File

Crystal structure of the DNA binding ETS domain of the human protein FEV in complex with DNA

Newman, J.A., Cooper, C.D.O., Krojer, T., Shrestha, L., Allerston, C.K., Vollmar, M., Arrowsmith, C.H., Burgess-Brown, N., Edwards, A., von Delft, F., Gileadi, O.

(2015) J Biological Chem 290: 13692

Released	2013-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	PROTEIN FEV (protein) 5'-D(APCPCPGPGPAPAPGPTPGP)-3' (nucleic acid) 5'-D(CPAPCPTPTPCPCPGPGPTP)-3' (nucleic acid)

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3ZQ4 \| pdb_00003zq4	Download File View File

Unusual, dual endo- and exo-nuclease activity in the degradosome explained by crystal structure analysis of RNase J1

Newman, J.A., Hewitt, L., Rodrigues, C., Solovyova, A., Harwood, C.R., Lewis, R.J.

(2011) Structure 19: 1241

Released	2011-09-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	RIBONUCLEASE J 1 (protein)
Unique Ligands	CA, ZN

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3ZT9 \| pdb_00003zt9	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Moorella thermoacetica
Macromolecule	SERINE PHOSPHATASE (protein)
Unique Ligands	MN, PEG

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3ZTA \| pdb_00003zta	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)

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3ZTB \| pdb_00003ztb	Download File View File

The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Moorella thermoacetica
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)
Unique Ligands	IOD

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3ZXN \| pdb_00003zxn	Download File View File

Moorella thermoacetica RsbS S58E

Quin, M.B., Berrisford, J.M., Newman, J.A., Basle, A., Lewis, R.J., Marles-Wright, J.

(2012) Structure 20: 350

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Moorella thermoacetica ATCC 39073
Macromolecule	ANTI-SIGMA-FACTOR ANTAGONIST (STAS) DOMAIN PROTEIN (protein)
Unique Ligands	SCN

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4A3R \| pdb_00004a3r	Download File View File

Crystal structure of Enolase from Bacillus subtilis.

Newman, J.A., Hewitt, L., Rodrigues, C., Solovyova, A.S., Harwood, C.R., Lewis, R.J.

(2012) J Mol Biology 416: 121

Released	2012-08-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	ENOLASE (protein)
Unique Ligands	CIT, NA

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4A3S \| pdb_00004a3s	Download File View File

Crystal structure of PFK from Bacillus subtilis

Newman, J.A., Hewitt, L., Rodrigues, C., Solovyova, A.S., Harwood, C.R., Lewis, R.J.

(2012) J Mol Biology 416: 121

Released	2012-08-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	6-PHOSPHOFRUCTOKINASE (protein)

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4B2O \| pdb_00004b2o	Download File View File

Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.

Newman, J.A., Diethmaier, C., Kovacs, A.T., Rodrigues, C., Kuipers, O.P., Stulke, J., Lewis, R.J.

(2014) J Bacteriol 196: 265

Released	2013-07-24
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	YMDB PHOSPHODIESTERASE (protein)
Unique Ligands	FE2, PO4

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4BQA \| pdb_00004bqa	Download File View File

Crystal structure of the ETS domain of human ETS2 in complex with DNA

Newman, J.A., Cooper, C.D.O., Krojer, T., Arrowsmith, C.H., Bountra, C., Edwards, A., Gileadi, O.

(2015) J Biological Chem 290: 8539

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN C-ETS-2 (protein) 5'-D(APCPCPGPGPAPAPGPTPGP)-3' (nucleic acid) 5'-D(CPAPCPTPTPCPCPGPGPTP)-3' (nucleic acid)

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4CDG \| pdb_00004cdg	Download File View File

Crystal structure of the Bloom's syndrome helicase BLM in complex with Nanobody

Newman, J.A., Savitsky, P., Allerston, C.K., Pike, A.C.W., Pardon, E., Steyaert, J., Arrowsmith, C.H., von Delft, F., Bountra, C., Edwards, A., Gileadi, O.

(2015) Nucleic Acids Res 43: 5221

Released	2013-11-13
Method	X-RAY DIFFRACTION 2.794 Å
Organisms	Homo sapiens Lama glama
Macromolecule	BLOOM SYNDROME PROTEIN (protein) NANOBODY (protein)
Unique Ligands	ADP, ZN

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4CGZ \| pdb_00004cgz	Download File View File

Crystal structure of the Bloom's syndrome helicase BLM in complex with DNA

Newman, J.A., Savitsky, P., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

(2015) Nucleic Acids Res 43: 5221

Released	2013-12-11
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	BLOOM'S SYNDROME HELICASE (protein) 5'-D(APGPCPGPTPCPGPAPGPAPTPCP)-3' (nucleic acid) 5'-D(GPAPTPCPTPCPGPAPCPGPCPTPCPDT CPCP*CP)-3' (nucleic acid)
Unique Ligands	ADP, ZN

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4CKR \| pdb_00004ckr	Download File View File

Crystal structure of the human DDR1 kinase domain in complex with DDR1-IN-1

Canning, P., Elkins, J.M., Goubin, S., Mahajan, P., Krojer, T., Newman, J.A., Dixon-Clarke, S., Chaikuad, A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.

(2013) ACS Chem Biol 8: 2145

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1 (protein)
Unique Ligands	DI1, EDO

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4CO8 \| pdb_00004co8	Download File View File

Structure of the DNA binding ETS domain of human ETV4

Newman, J.A., Cooper, C.D.O., Shrestha, L., Burgess-Brown, N., Kopec, J., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2015) J Biological Chem 290: 13692

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	ETS TRANSLOCATION VARIANT 4 (protein)
Unique Ligands	EDO

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4COS \| pdb_00004cos	Download File View File

Crystal structure of the PHD-Bromo-PWWP cassette of human PRKCBP1

Krojer, T., Savitsky, P., Newman, J.A., Cooper, C.D.O., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Filippakopoulos, P.

(2016) Cell Rep 17: 2724-2737

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN KINASE C-BINDING PROTEIN 1 (protein)
Unique Ligands	DIO, ZN

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4CRS \| pdb_00004crs	Download File View File

Human Protein Kinase N2 (PKN2, PRKCL2) in complex with ATPgammaS

Mathea, S., Elkins, J.M., Shrestha, L., Szklarz, M., Tallant, C., Newman, J.A., Cooper, C.D., Shrestha, B., Tumber, A., Cocking, R., Salah, E., von Delft, F., Arrowsmith, C., Edwards, A.M., Bountra, C., Knapp, S.

To be published

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE N2 (protein)
Unique Ligands	AGS, MG, SO4