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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Azotobacter vinelandii (4)
	Thermotoga maritima MSB8 (4)
	Thermotoga maritima (2)

Taxonomy

Bacteria (10)

Experimental Method

	X-RAY DIFFRACTION (6)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)
	3.5 - 4.0 (1)

Release Date

	2020 - 2024 (6)
	2025 - 2029 (4)

Enzyme Classification Name

Oxidoreductases (10)

Symmetry Type

	Asymmetric (7)
	Cyclic (3)

AllSelected

1 to 10 of 10 Structures

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7O1O \| pdb_00007o1o	Download File View File

Complex-B bound [FeFe]-hydrogenase maturase HydE fromT. Maritima (Auxiliary cluster deleted variant)

Rohac, R., Martin, L., Liu, L., Basu, D., Tao, L., Britt, R.D., Rauchfuss, T., Nicolet, Y.

(2021) J Am Chem Soc 143: 8499-8508

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	[FeFe] hydrogenase maturase subunit HydE (protein)
Unique Ligands	CL, CMO, CYN, CYS, FE2, GOL, PO4, PYR, SAH, SF4

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7O1P \| pdb_00007o1p	Download File View File

[FeFe]-hydrogenase maturase HydE from T. Maritima (C-ter stretch absent)

Rohac, R., Martin, L., Liu, L., Basu, D., Tao, L., Britt, R.D., Rauchfuss, T., Nicolet, Y.

(2021) J Am Chem Soc 143: 8499-8508

Released	2021-05-26
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	[FeFe] hydrogenase maturase subunit HydE (protein)
Unique Ligands	CL, CO3, CPS, SAH, SF4

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7O1S \| pdb_00007o1s	Download File View File

Complex-B bound [FeFe]-hydrogenase maturase HydE fromT. Maritima (Wild-type protein)

Rohac, R., Martin, L., Liu, L., Basu, D., Tao, L., Britt, R.D., Rauchfuss, T., Nicolet, Y.

(2021) J Am Chem Soc 143: 8499-8508

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	[FeFe] hydrogenase maturase subunit HydE (protein)
Unique Ligands	CMO, CPS, CYN, CYS, FE2, FES, H2S, IOD, SAH, SF4

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7O1T \| pdb_00007o1t	Download File View File

Fe(CO)2CNCl species bound [HydE from T. Maritima

Rohac, R., Martin, L., Liu, L., Basu, D., Tao, L., Britt, R.D., Rauchfuss, T., Nicolet, Y.

(2021) J Am Chem Soc 143: 8499-8508

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermotoga maritima
Macromolecule	[FeFe] hydrogenase maturase subunit HydE (protein)
Unique Ligands	5X8, CL, CMO, CPS, CYN, CYS, FE2, IOD, PYR, SF4

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7O25 \| pdb_00007o25	Download File View File

Complex-B bound [FeFe]-hydrogenase maturase HydE from T. maritima (reaction triggered in the crystal)

Rohac, R., Martin, L., Liu, L., Basu, D., Tao, L., Britt, R.D., Rauchfuss, T., Nicolet, Y.

(2021) J Am Chem Soc 143: 8499-8508

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Thermotoga maritima
Macromolecule	[FeFe] hydrogenase maturase subunit HydE (protein)
Unique Ligands	5X8, CL, CMO, CPS, CYN, CYS, EDO, FE2, GOL, MET, PO4, PYR, SAM, SF4, TAM

Explore in 3D

7O26 \| pdb_00007o26	Download File View File

Complex-B bound [FeFe]-hydrogenase maturase HydE fromT. Maritima (5'dA + Methionine)

Rohac, R., Martin, L., Liu, L., Basu, D., Tao, L., Britt, R.D., Rauchfuss, T., Nicolet, Y.

(2021) J Am Chem Soc 143: 8499-8508

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	[FeFe] hydrogenase maturase subunit HydE (protein)
Unique Ligands	5AD, CL, CMO, CPS, CYN, CYS, FE2, FES, GOL, H2S, IOD, MET, SF4

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9CTZ \| pdb_00009ctz	Download File View File

Azotobacter vinelandii MoFeP (C2 symmetry)

Narehood, S.M., Cook, B.D., Srisantitham, S., Eng, V.H., Shiau, A., Britt, R.D., Herzik, M.A., Tezcan, F.A.

(2025) Nature 637: 991-997

Released	2025-01-15
Method	ELECTRON MICROSCOPY 2.67 Å
Organisms	Azotobacter vinelandii
Macromolecule	Nitrogenase molybdenum-iron protein alpha chain (protein) Nitrogenase molybdenum-iron protein beta chain (protein)
Unique Ligands	CLF, FE, HCA, ICS

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9CU0 \| pdb_00009cu0	Download File View File

Azotobacter vinelandii 1:1:1 MoFeP:FeP:FeSII-Complex (C1 symmetry)

Narehood, S.M., Cook, B.D., Srisantitham, S., Eng, V.H., Shiau, A., Britt, R.D., Herzik, M.A., Tezcan, F.A.

(2025) Nature 637: 991-997

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.94 Å
Organisms	Azotobacter vinelandii
Macromolecule	Nitrogenase iron protein 1 (protein) Nitrogenase molybdenum-iron protein alpha chain (protein) Nitrogenase molybdenum-iron protein beta chain (protein) Protein FeSII (protein)
Unique Ligands	ADP, CLF, FE, FES, HCA, ICS, MG, SF4

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9CU1 \| pdb_00009cu1	Download File View File

Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (termini; C1 symmetry)

Narehood, S.M., Cook, B.D., Srisantitham, S., Eng, V.H., Shiau, A., Britt, R.D., Herzik, M.A., Tezcan, F.A.

(2025) Nature 637: 991-997

Released	2025-01-15
Method	ELECTRON MICROSCOPY 2.83 Å
Organisms	Azotobacter vinelandii
Macromolecule	Nitrogenase iron protein 1 (protein) Nitrogenase molybdenum-iron protein alpha chain (protein) Nitrogenase molybdenum-iron protein beta chain (protein) Protein FeSII (protein)
Unique Ligands	ADP, CLF, FE, FES, HCA, ICS, MG, SF4

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9CU2 \| pdb_00009cu2	Download File View File

Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (C2 symmetry)

Narehood, S.M., Cook, B.D., Srisantitham, S., Eng, V.H., Shiau, A., Britt, R.D., Herzik, M.A., Tezcan, F.A.

(2025) Nature 637: 991-997

Released	2025-01-15
Method	ELECTRON MICROSCOPY 2.27 Å
Organisms	Azotobacter vinelandii
Macromolecule	Nitrogenase iron protein 1 (protein) Nitrogenase molybdenum-iron protein alpha chain (protein) Nitrogenase molybdenum-iron protein beta chain (protein) Protein FeSII (protein)
Unique Ligands	ADP, CLF, FE, FES, HCA, ICS, MG, SF4

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7O1O | pdb_00007o1o

Complex-B bound [FeFe]-hydrogenase maturase HydE fromT. Maritima (Auxiliary cluster deleted variant)

7O1P | pdb_00007o1p

[FeFe]-hydrogenase maturase HydE from T. Maritima (C-ter stretch absent)

7O1S | pdb_00007o1s

Complex-B bound [FeFe]-hydrogenase maturase HydE fromT. Maritima (Wild-type protein)

7O1T | pdb_00007o1t

Fe(CO)2CNCl species bound [HydE from T. Maritima

7O25 | pdb_00007o25

Complex-B bound [FeFe]-hydrogenase maturase HydE from T. maritima (reaction triggered in the crystal)

7O26 | pdb_00007o26

Complex-B bound [FeFe]-hydrogenase maturase HydE fromT. Maritima (5'dA + Methionine)

9CTZ | pdb_00009ctz

Azotobacter vinelandii MoFeP (C2 symmetry)

9CU0 | pdb_00009cu0

Azotobacter vinelandii 1:1:1 MoFeP:FeP:FeSII-Complex (C1 symmetry)

9CU1 | pdb_00009cu1

Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (termini; C1 symmetry)

9CU2 | pdb_00009cu2

Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (C2 symmetry)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7O1O | pdb_00007o1o

7O1P | pdb_00007o1p

7O1S | pdb_00007o1s

7O1T | pdb_00007o1t

7O25 | pdb_00007o25

7O26 | pdb_00007o26

9CTZ | pdb_00009ctz

9CU0 | pdb_00009cu0

9CU1 | pdb_00009cu1

9CU2 | pdb_00009cu2