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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = D10

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Search Summary

This query matches 1,973 Structures.

Refinements

Structure Determination Methodology

experimental (1,973)

Scientific Name of Source Organism

	Homo sapiens (569)
	Pseudomonas aeruginosa (61)
	synthetic construct (46)
	Escherichia coli (45)
	Mus musculus (43)
	Escherichia coli K-12 (31)
	Mycobacterium tuberculosis H37Rv (31)
	Brevundimonas diminuta (28)
	Severe acute respiratory syndrome coronavirus 2 (28)
	Rattus norvegicus (26)

More...

Taxonomy

	Bacteria (937)
	Eukaryota (887)
	Riboviria (67)
	other sequences (46)
	Archaea (38)
	Duplodnaviria (35)
	Varidnaviria (15)
	Eukaryota (eukaryotes) (8)
	unclassified sequences (7)

Experimental Method

	X-RAY DIFFRACTION (1,971)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (1,972)
	DNA (36)
	RNA (7)

Refinement Resolution (Å)

	0.5 - 1.0 (19)
	1.0 - 1.5 (371)
	1.5 - 2.0 (891)
	2.0 - 2.5 (515)
	2.5 - 3.0 (152)
	3.0 - 3.5 (22)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (31)
	2000 - 2004 (83)
	2005 - 2009 (245)
	2010 - 2014 (377)
	2015 - 2019 (555)
	2020 - 2024 (665)
	2025 - 2029 (13)

Enzyme Classification Name

	Hydrolases (466)
	Transferases (349)
	Oxidoreductases (206)
	Lyases (126)
	Ligases (81)
	Isomerases (41)
	Translocases (2)

Membrane Protein Annotation

	OPM (14)
	MemProtMD (8)
	PDBTM (8)
	mpstruc (7)

Symmetry Type

	Asymmetric (1,131)
	Cyclic (745)
	Dihedral (190)
	Octahedral (6)
	Tetrahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (326)
	All beta proteins (228)
	Artifacts (276)
	Alpha and beta proteins (a+b) (252)
	All alpha proteins (174)
	Small proteins (14)
	Multi-domain proteins (alpha and beta) (21)
	Membrane and cell surface proteins and peptides (5)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 1,973 Structures

Page 1 of 79

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1A5N \| pdb_00001a5n	Download File View File

K217A VARIANT OF KLEBSIELLA AEROGENES UREASE, CHEMICALLY RESCUED BY FORMATE AND NICKEL

Pearson, M.A., Schaller, R.A., Michel, L.O., Karplus, P.A., Hausinger, R.P.

(1998) Biochemistry 37: 6214-6220

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Klebsiella aerogenes
Macromolecule	UREASE (ALPHA SUBUNIT) (protein) UREASE (BETA SUBUNIT) (protein) UREASE (GAMMA SUBUNIT) (protein)
Unique Ligands	FMT, NI

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1A5O \| pdb_00001a5o	Download File View File

K217C VARIANT OF KLEBSIELLA AEROGENES UREASE, CHEMICALLY RESCUED BY FORMATE AND NICKEL

Pearson, M.A., Schaller, R.A., Michel, L.O., Karplus, P.A., Hausinger, R.P.

(1998) Biochemistry 37: 6214-6220

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Klebsiella aerogenes
Macromolecule	UREASE (ALPHA SUBUNIT) (protein) UREASE (BETA SUBUNIT) (protein) UREASE (GAMMA SUBUNIT) (protein)
Unique Ligands	FMT, NI

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1AN5 \| pdb_00001an5	Download File View File

E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH CB3717

Stout, T.J., Sage, C.R., Stroud, R.M.

(1998) Structure 6: 839-848

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	CB3, PO4

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1AOB \| pdb_00001aob	Download File View File

E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DDURD

Stout, T.J., Sage, C.R., Stroud, R.M.

(1998) Structure 6: 839-848

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	DDU, FMT, PO4

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1AQ6 \| pdb_00001aq6	Download File View File

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS

Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1997) J Biological Chem 272: 33015-33022

Released	1998-01-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	L-2-HALOACID DEHALOGENASE (protein)
Unique Ligands	FMT

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1AUS \| pdb_00001aus	Download File View File

ACTIVATED UNLIGANDED SPINACH RUBISCO

Taylor, T.C., Andersson, I.

(1997) Biochemistry 36: 4041-4046

Released	1995-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Spinacia oleracea
Macromolecule	RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE (protein)
Unique Ligands	FMT, MG

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1AXW \| pdb_00001axw	Download File View File

E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH METHOTREXATE (MTX) AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)

Stout, T.J., Sage, C.R., Stroud, R.M.

To be published

Released	1998-10-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	MTX, UMP

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1B93 \| pdb_00001b93	Download File View File

METHYLGLYOXAL SYNTHASE FROM ESCHERICHIA COLI

Saadat, D., Harrison, D.H.T.

(1999) Structure 7: 309-317

Released	1999-03-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (METHYLGLYOXAL SYNTHASE) (protein)
Unique Ligands	FMT, PO4

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1BDU \| pdb_00001bdu	Download File View File

E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DURD

Stout, T.J., Sage, C.R., Stroud, R.M.

(1998) Structure 6: 839-848

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	DUR, PO4

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1BID \| pdb_00001bid	Download File View File

E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DUMP

Stout, T.J., Sage, C.R., Stroud, R.M.

(1998) Structure 6: 839-848

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	UMP

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1C3L \| pdb_00001c3l	Download File View File

SUBTILISIN-CARLSBERG COMPLEXED WITH XENON (8 BAR)

Prange, T., Schiltz, M., Pernot, L., Colloc'h, N., Longhi, S.

(1998) Proteins 30: 61-73

Released	1999-08-04
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Bacillus licheniformis
Macromolecule	SUBTILISIN-CARLSBERG (protein)
Unique Ligands	CA, FMT, XE

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1CFH \| pdb_00001cfh	Download File View File

STRUCTURE OF THE METAL-FREE GAMMA-CARBOXYGLUTAMIC ACID-RICH MEMBRANE BINDING REGION OF FACTOR IX BY TWO-DIMENSIONAL NMR SPECTROSCOPY

Freedman, S.J., Furie, B.C., Furie, B., Baleja, J.D.

(1995) J Biological Chem 270: 7980-7987

Released	1995-07-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR IX (protein)
Unique Ligands	FMT

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1DDU \| pdb_00001ddu	Download File View File

E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH CB3717 AND 2',5'-DIDEOXYURIDINE (DDURD)

Stout, T.J., Sage, C.R., Stroud, R.M.

(1998) Structure 6: 839-848

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	CB3, DDU, PO4

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1DPM \| pdb_00001dpm	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING PHOSPHOTRIESTERASE WITH BOUND SUBSTRATE ANALOG DIETHYL 4-METHYLBENZYLPHOSPHONATE

Vanhooke, J.L., Benning, M.M., Raushel, F.M., Holden, H.M.

(1996) Biochemistry 35: 6020-6025

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	EBP, FMT, ZN

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1DX5 \| pdb_00001dx5	Download File View File

Crystal structure of the thrombin-thrombomodulin complex

Fuentes-Prior, P., Iwanaga, Y., Huber, R., Pagila, R., Rumennik, G., Seto, M., Morser, J., Light, D.R., Bode, W.

(2000) Nature 404: 518

Released	2000-04-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) Thrombin light chain (protein) Thrombomodulin (protein)
Unique Ligands	0GJ, CA, FMT, NA, NAG

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1F20 \| pdb_00001f20	Download File View File

CRYSTAL STRUCTURE OF RAT NEURONAL NITRIC-OXIDE SYNTHASE FAD/NADP+ DOMAIN AT 1.9A RESOLUTION.

Zhang, J., Martasek, P., Masters, B.S., Kim, J.P.

(2001) J Biological Chem 276: 37506-37513

Released	2001-10-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	NITRIC-OXIDE SYNTHASE (protein)
Unique Ligands	FAD, FMT, GOL, NAP

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1F76 \| pdb_00001f76	Download File View File

ESCHERICHIA COLI DIHYDROOROTATE DEHYDROGENASE

Norager, S., Jensen, K.F., Bjornberg, O., Larsen, S.

(2002) Structure 10: 1211-1223

Released	2002-10-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Dihydroorotate dehydrogenase (quinone) (protein)
Unique Ligands	FMN, FMT, ORO