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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = MH6

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Streptomyces azureus (10)
	Escherichia coli K-12 (5)
	Planobispora rosea (5)
	Deinococcus radiodurans (2)
	Escherichia coli (2)
	Streptomyces actuosus (2)
	Thermotoga maritima (2)
	synthetic construct (2)
	Homo sapiens (1)
	Methanocaldococcus jannaschii (1)

More...

Taxonomy

	Bacteria (20)
	other sequences (2)
	Archaea (1)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	SOLUTION NMR (6)
	ELECTRON CRYSTALLOGRAPHY (1)
	THEORETICAL MODEL (1)

Polymer Entity Type

	Protein (21)
	RNA (5)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (6)
	2010 - 2014 (9)
	2015 - 2019 (3)

Enzyme Classification Name

	Lyases (1)
	Hydrolases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (18)
	Cyclic (3)

SCOP Classification

	All beta proteins (7)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (8)
	All alpha proteins (2)
	Small proteins (2)
	Low resolution protein structures (2)
	Peptides (2)

AllSelected

1 to 21 of 21 Structures

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1D8T \| pdb_00001d8t	Download File View File

CRYSTAL STRUCTURE OF ELONGATION FACTOR, TU (EF-TU-MGGDP) COMPLEXED WITH GE2270A, A THIAZOLYL PEPTIDE ANTIBIOTIC

Heffron, S.E., Jurnak, F.

(2000) Biochemistry 39: 37

Released	2000-10-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli Planobispora rosea
Macromolecule	ELONGATION FACTOR TU (protein) THIOCILLIN GE2270 (protein)
Unique Ligands	ACT, GDP, MG

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1E9W \| pdb_00001e9w	Download File View File

Structure of the macrocycle thiostrepton solved using the anomalous dispersive contribution from sulfur

Bond, C.S., Shaw, M.P., Alphey, M.S., Hunter, W.N.

(2001) Acta Crystallogr D Biol Crystallogr 57: 755

Released	2001-03-23
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Streptomyces azureus
Macromolecule	THIOSTREPTON (protein)

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1OLN \| pdb_00001oln	Download File View File

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Lentzen, G., Klinck, R., Matassova, N., Aboul-Ela, F., Murchie, A.I.H.

(2003) Chem Biol 10: 769

Released	2003-09-11
Method	SOLUTION NMR THEORETICAL MODEL
Organisms	Streptomyces azureus Thermotoga maritima
Macromolecule	50S RIBOSOMAL PROTEIN L11 (protein) THIOSTREPTON (protein) RNA (nucleic acid)

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2C77 \| pdb_00002c77	Download File View File

EF-Tu complexed with a GTP analog and the antibiotic GE2270 A

Parmeggiani, A., Krab, I.M., Okamura, S., Nielsen, R.C., Nyborg, J., Nissen, P.

(2006) Biochemistry 45: 6846-6857

Released	2006-03-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Planobispora rosea Thermus thermophilus HB8
Macromolecule	ELONGATION FACTOR TU-B (protein) THIOCILLIN GE2270 (protein)
Unique Ligands	GNP, MG, PEG

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2E49 \| pdb_00002e49	Download File View File

Crystal Structure of Human D-Amino Acid Oxidase in Complex with Imino-Serine

Kawazoe, T., Tsuge, H., Imagawa, T., Fukui, K.

(2007) Biochem Biophys Res Commun 355: 385-391

Released	2007-03-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	D-amino-acid oxidase (protein)
Unique Ligands	FAD, MH6

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2JQ7 \| pdb_00002jq7	Download File View File

Model for thiostrepton binding to the ribosomal L11-RNA

Jonker, H.R.A., Ilin, S., Grimm, S.K., Woehnert, J., Schwalbe, H.

(2007) Nucleic Acids Res 35: 441

Released	2007-07-03
Method	SOLUTION NMR
Organisms	Escherichia coli Streptomyces azureus Thermotoga maritima
Macromolecule	50S RIBOSOMAL PROTEIN L11 (protein) THIOSTREPTON (protein) RIBOSOMAL RNA (nucleic acid)

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2L2W \| pdb_00002l2w	Download File View File

Thiostrepton

Jonker, H.R.A., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.-D.

(2011) Angew Chem Int Ed Engl 50: 3308-3312

Released	2011-02-02
Method	SOLUTION NMR
Organisms	Streptomyces azureus
Macromolecule	Thiostrepton (protein)

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2L2X \| pdb_00002l2x	Download File View File

Thiostrepton, oxidized at CA-CB bond of residue 9

Jonker, H.R.A., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.-D.

(2011) Angew Chem Int Ed Engl 50: 3308-3312

Released	2011-02-02
Method	SOLUTION NMR
Organisms	Streptomyces azureus
Macromolecule	Thiostrepton (protein)

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2L2Y \| pdb_00002l2y	Download File View File

Thiostrepton, epimer form of residue 9

Jonker, H.R.A., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.-D.

(2011) Angew Chem Int Ed Engl 50: 3308-3312

Released	2011-02-02
Method	SOLUTION NMR
Organisms	Streptomyces azureus
Macromolecule	Thiostrepton (protein)

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2MC0 \| pdb_00002mc0	Download File View File

Structural Basis of a Thiopeptide Antibiotic Multidrug Resistance System from Streptomyces lividans:Nosiheptide in Complex with TipAS

Habazettl, J., Allan, M.G., Jensen, P., Sass, H., Grzesiek, S.

(2014) Proc Natl Acad Sci U S A 111: E5498-E5507

Released	2014-12-10
Method	SOLUTION NMR
Organisms	Streptomyces actuosus Streptomyces lividans
Macromolecule	HTH-type transcriptional activator TipA (protein) nosiheptide (protein)
Unique Ligands	NO1

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2ZJP \| pdb_00002zjp	Download File View File

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Deinococcus radiodurans Streptomyces actuosus
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	MG, NO1, ZN

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3CEP \| pdb_00003cep	Download File View File

Structure of a tryptophan synthase quinonoid intermediate

Barends, T.R.M., Domratcheva, T., Kulik, V., Blumenstein, L., Dunn, M.F., Schlichting, I.

(2008) Chembiochem 9: 1024-1028

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Tryptophan synthase alpha chain (protein) Tryptophan synthase beta chain (protein)
Unique Ligands	CS, G3P, IDM, MH6, PLP

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3CF5 \| pdb_00003cf5	Download File View File

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Deinococcus radiodurans Streptomyces azureus
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	MG

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3U2Q \| pdb_00003u2q	Download File View File

EF-Tu (Escherichia coli) in complex with NVP-LFF571

Palestrant, D.J.

(2012) J Med Chem 55: 2376-2387

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12 Planobispora rosea
Macromolecule	Elongation factor Tu 1 (protein) Thiocillin GE2270 analogue NVP-LFF571 (protein)
Unique Ligands	GDP, MG

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3U6B \| pdb_00003u6b	Download File View File

Ef-tu (escherichia coli) in complex with nvp-ldi028

Palestrant, D.J.

(2011) J Med Chem 54: 8099-8109

Released	2012-02-08
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Escherichia coli K-12 Planobispora rosea
Macromolecule	Elongation factor Tu 1 (protein) Thiocillin GE2270 analogue NVP-LDI028 (protein)
Unique Ligands	GDP, MG

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3U6K \| pdb_00003u6k	Download File View File

Ef-tu (escherichia coli) in complex with nvp-ldk733

Palestrant, D.J.

(2011) J Med Chem 54: 8099-8109

Released	2012-02-08
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli K-12 Planobispora rosea
Macromolecule	Elongation factor Tu 1 (protein) Thiocillin GE2270 analogue NVP-LDK733 (protein)
Unique Ligands	GDP, MG

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4G5G \| pdb_00004g5g	Download File View File

ef-tu (Escherichia coli) complexed with nvp-ldu796

Palestrant, D.

(2012) J Med Chem 55: 6934-6941

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Elongation factor Tu 1 (protein) thiomuracin A derivative (protein)
Unique Ligands	GDP, MG, SO4

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4HP2 \| pdb_00004hp2	Download File View File

Invariom refinement of a new dimeric monoclinic 2 solvate of thiostrepton at 0.64 angstrom resolution

Proepper, K., Holstein, J.J., Huebschle, C.B., Bond, C.S., Dittrich, B.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1530-1539

Released	2013-10-02
Method	X-RAY DIFFRACTION 0.64 Å
Organisms	Streptomyces azureus
Macromolecule	Thiostrepton (protein)
Unique Ligands	DMF, ETZ

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5D8H \| pdb_00005d8h	Download File View File

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON

Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.

To be published

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methanocaldococcus jannaschii Streptomyces azureus
Macromolecule	50S ribosomal protein L10 (protein) 50S ribosomal protein L11 (protein) THIOSTREPTON (protein) 23S ribosomal RNA (nucleic acid)
Unique Ligands	MG, NA, TRS

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5JBQ \| pdb_00005jbq	Download File View File

EF-TU (ESCHERICHIA COLI) IN COMPLEX WITH THIOMURACIN ANALOG

Palestrant, D., Stams, T.

(2016) J Med Chem 59: 6920-6928

Released	2016-07-13
Method	X-RAY DIFFRACTION 2.006 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Elongation factor Tu 1 (protein) THIOMURACIN ANALOG (protein)
Unique Ligands	GDP, MG, SO4