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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = NAG

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (15)
	synthetic construct (5)
	Influenza A virus (2)
	Human immunodeficiency virus (1)
	Human immunodeficiency virus 1 (1)

Taxonomy

	Eukaryota (15)
	other sequences (5)
	Riboviria (4)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (10)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (4)
	2020 - 2024 (10)

Symmetry Type

Asymmetric (15)

AllSelected

1 to 15 of 15 Structures

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Explore in 3D

3WUW \| pdb_00003wuw	Download File View File

KIR3DL1 in complex with HLA-B*57:01.I80T

Vivian, J.P., Rossjohn, J.

(2014) J Immunol 192: 2875-2884

Released	2014-05-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-57 alpha chain (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) Peptide (protein)
Unique Ligands	NAG

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5B38 \| pdb_00005b38	Download File View File

KIR3DL1005 in complex with HLA-B57:01

Vivian, J.P., Rossjohn, J.

(2016) J Exp Medicine 213: 791-807

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-57 alpha chain (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) peptide from Ig kappa chain C region (protein)
Unique Ligands	NAG

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5B39 \| pdb_00005b39	Download File View File

KIR3DL1015 in complex with HLA-B57:01

Vivian, J.P., Rossjohn, J.

(2016) J Exp Medicine 213: 791-807

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-57 alpha chain (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) peptide from Ig kappa chain C region (protein)
Unique Ligands	NAG

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5T6Z \| pdb_00005t6z	Download File View File

KIR3DL1 in complex with HLA-B*57:01-TW10

Pymm, P., Rossjohn, J., Vivian, J.P.

(2017) Nat Struct Mol Biol 24: 387-394

Released	2017-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) Decapeptide: THR-SER-THR-LEU-GLN-GLU-GLN-ILE-GLY-TRP (protein) HLA class I histocompatibility antigen, B-57 alpha chain (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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5T70 \| pdb_00005t70	Download File View File

KIR3DL1 in complex with HLA-B*57:01 presenting TSNLQEQIGW

Pymm, P., Rossjohn, J., Vivian, J.P.

(2017) Nat Struct Mol Biol 24: 387-394

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) Decapeptide: THR-SER-ASN-LEU-GLN-GLU-GLN-ILE-GLY-TRP (protein) HLA class I histocompatibility antigen, B-57 alpha chain (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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6V3J \| pdb_00006v3j	Download File View File

KIR3DL1 in complex with HLA-B*57:03 presenting the peptide LSSPVTKSF

Maclachlan, B., Rossjohn, J., Vivian, J.P.

(2020) Proc Natl Acad Sci U S A 117: 11636-11647

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) HLA-B alpha chain (B*5703GB) (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) Peptide Leu-Ser-Ser-Pro-Val-Thr-Lys-Ser-Phe (protein)
Unique Ligands	NAG

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7K80 \| pdb_00007k80	Download File View File

KIR3DL1001 in complex with HLA-A24:02 presenting the RYPLTFGW peptide

MacLachlan, B.J., Rossjohn, J., Vivian, J.P.

(2021) J Immunol 206: 849-860

Released	2020-12-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ARG-TYR-PRO-LEU-THR-PHE-GLY-TRP (protein) Beta-2-microglobulin (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein)
Unique Ligands	ACT, FMT, NAG

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7K81 \| pdb_00007k81	Download File View File

KIR3DL1005 in complex with HLA-A24:02 presenting the RYPLTFGW peptide

MacLachlan, B.J., Rossjohn, J., Vivian, J.P.

(2021) J Immunol 206: 849-860

Released	2020-12-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ARG-TYR-PRO-LEU-THR-PHE-GLY-TRP (protein) Beta-2-microglobulin (protein) KIR3DL1 (protein) MHC class I antigen (protein)
Unique Ligands	NAG

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9BL2 \| pdb_00009bl2	Download File View File

KIR3DL1001 in complex with HLA-B57:03 presenting the AW10 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Catenin alpha-1 peptide (protein) HLA-B alpha chain (B*5703GB) (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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9BL3 \| pdb_00009bl3	Download File View File

KIR3DL1114 in complex with HLA-B57:03 presenting the AW10 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Catenin alpha-1 peptide (protein) HLA-B alpha chain (B*5703GB) (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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9BL4 \| pdb_00009bl4	Download File View File

KIR3DL1086 in complex with HLA-B57:03 presenting the AW10 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Catenin alpha-1 peptide (protein) HLA-B alpha chain (B*5703GB) (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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9BL5 \| pdb_00009bl5	Download File View File

KIR3DL1001 in complex with HLA-A24:02 presenting the TW9 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Beta-2-microglobulin (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein) Polymerase basic protein 2 peptide (protein)
Unique Ligands	NAG

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9BL6 \| pdb_00009bl6	Download File View File

KIR3DL1114 in complex with HLA-A24:02 presenting the TW9 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Beta-2-microglobulin (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein) Polymerase basic protein 2 peptide (protein)
Unique Ligands	NAG

Explore in 3D

9BL9 \| pdb_00009bl9	Download File View File

KIR3DL1114 in complex with HLA-A24:02 presenting the NEF peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	Beta-2-microglobulin (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein) NEF peptide (protein)
Unique Ligands	NAG

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9BLA \| pdb_00009bla	Download File View File

KIR3DL1086 in complex with HLA-A24:02 presenting the NEF peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) C-terminal core peptide (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein)
Unique Ligands	NAG

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3WUW | pdb_00003wuw

KIR3DL1 in complex with HLA-B*57:01.I80T

5B38 | pdb_00005b38

KIR3DL1005 in complex with HLA-B57:01

5B39 | pdb_00005b39

KIR3DL1015 in complex with HLA-B57:01

5T6Z | pdb_00005t6z

KIR3DL1 in complex with HLA-B*57:01-TW10

5T70 | pdb_00005t70

KIR3DL1 in complex with HLA-B*57:01 presenting TSNLQEQIGW

6V3J | pdb_00006v3j

KIR3DL1 in complex with HLA-B*57:03 presenting the peptide LSSPVTKSF

7K80 | pdb_00007k80

KIR3DL1001 in complex with HLA-A24:02 presenting the RYPLTFGW peptide

7K81 | pdb_00007k81

KIR3DL1005 in complex with HLA-A24:02 presenting the RYPLTFGW peptide

9BL2 | pdb_00009bl2

KIR3DL1001 in complex with HLA-B57:03 presenting the AW10 peptide

9BL3 | pdb_00009bl3

KIR3DL1114 in complex with HLA-B57:03 presenting the AW10 peptide

9BL4 | pdb_00009bl4

KIR3DL1086 in complex with HLA-B57:03 presenting the AW10 peptide

9BL5 | pdb_00009bl5

KIR3DL1001 in complex with HLA-A24:02 presenting the TW9 peptide

9BL6 | pdb_00009bl6

KIR3DL1114 in complex with HLA-A24:02 presenting the TW9 peptide

9BL9 | pdb_00009bl9

KIR3DL1114 in complex with HLA-A24:02 presenting the NEF peptide

9BLA | pdb_00009bla

KIR3DL1086 in complex with HLA-A24:02 presenting the NEF peptide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

3WUW | pdb_00003wuw

5B38 | pdb_00005b38

5B39 | pdb_00005b39

5T6Z | pdb_00005t6z

5T70 | pdb_00005t70

6V3J | pdb_00006v3j

7K80 | pdb_00007k80

7K81 | pdb_00007k81

9BL2 | pdb_00009bl2

9BL3 | pdb_00009bl3

9BL4 | pdb_00009bl4

9BL5 | pdb_00009bl5

9BL6 | pdb_00009bl6

9BL9 | pdb_00009bl9

9BLA | pdb_00009bla