RCSB PDB: Search

1DVJ \| pdb_00001dvj	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 6-AZAUMP

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KLY \| pdb_00001kly	Download File View File

Orotidine monophosphate decarboxylase D70G mutant complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM0 \| pdb_00001km0	Download File View File

Crystal structure of orotidine monophosphate decarboxylase mutant D70N complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM1 \| pdb_00001km1	Download File View File

Orotidine monophosphate decarboxylase mutant S127A crystal structure

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM2 \| pdb_00001km2	Download File View File

crystal structure of orotidine monophosphate mutant Q185A with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM3 \| pdb_00001km3	Download File View File

crystal structure of ODCase mutant K42A complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM5 \| pdb_00001km5	Download File View File

Crystal structure of ODCase mutant D75N complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	CL, UP6

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1LOS \| pdb_00001los	Download File View File

crystal structure of orotidine monophosphate decarboxylase mutant deltaR203A complexed with 6-azaUMP

Wu, N., Pai, E.F.

(2002) J Biological Chem 277: 28080-28087

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	UP6

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2GUU \| pdb_00002guu	Download File View File

crystal structure of Plasmodium vivax orotidine 5-monophosphate decarboxylase with 6-aza-UMP bound

Dong, A., Lew, J., Zhao, Y., Sundararajan, E., Wasney, G., Vedadi, M., Koeieradzki, I., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Pai, E.F., Kotra, L., Bochkarev, A., Hui, R., Amani, M., Structural Genomics Consortium (SGC)

To be published

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Plasmodium vivax
Macromolecule	ODcase (protein)
Unique Ligands	UP6

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3G1A \| pdb_00003g1a	Download File View File

Crystal structure of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Chan, K.K., Gerlt, J.A., Almo, S.C.

(2009) Biochemistry 48: 5518-5531

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	UP6

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3G24 \| pdb_00003g24	Download File View File

Crystal structure of the mutant D70N of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Chan, K.K., Gerlt, J.A., Almo, S.C.

(2009) Biochemistry 48: 5518-5531

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	UP6

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3GDL \| pdb_00003gdl	Download File View File

Crystal structure of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2009) Biochemistry 48: 5518-5531

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	UP6

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3GDT \| pdb_00003gdt	Download File View File

Crystal structure of the D91N mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2009) Biochemistry 48: 5518-5531

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	UP6

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3LLD \| pdb_00003lld	Download File View File

Crystal structure of the mutant S127G of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2010) Biochemistry 49: 3514-3516

Released	2010-06-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	UP6

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3LLF \| pdb_00003llf	Download File View File

Crystal structure of the mutant S127P of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2010) Biochemistry 49: 3514-3516

Released	2010-06-16
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	UP6

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3NQ6 \| pdb_00003nq6	Download File View File

Crystal structure of the mutant P180A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with inhibitor 6-azaUMP

Fedorov, A.A., Fedorov, E.V., Wood, B.M., Gerlt, J.A., Almo, S.C.

To be published

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.494 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	GOL, UP6

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3PBU \| pdb_00003pbu	Download File View File

Crystal structure of the mutant I96S of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Iiams, V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2011) Biochemistry 50: 8497-8507

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.299 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	UP6

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3PBV \| pdb_00003pbv	Download File View File

Crystal structure of the mutant I96T of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Iiams, V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2011) Biochemistry 50: 8497-8507

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	GOL, UP6

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3PBW \| pdb_00003pbw	Download File View File

Crystal structure of the mutant L123N of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Iiams, V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2011) Biochemistry 50: 8497-8507

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	UP6

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3PBY \| pdb_00003pby	Download File View File

Crystal structure of the mutant L123S of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Iiams, V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2011) Biochemistry 50: 8497-8507

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	GOL, UP6

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3PC0 \| pdb_00003pc0	Download File View File

Crystal structure of the mutant V155S of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Iiams, V., Wood, B.M., Gerlt, J.A., Almo, S.C.

(2011) Biochemistry 50: 8497-8507

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.298 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-monophosphate decarboxylase (protein)
Unique Ligands	GOL, UP6

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3SY5 \| pdb_00003sy5	Download File View File

Crystal structure of the mutant S127A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with the inhibitor 6azaUMP

Fedorov, A.A., Fedorov, E.V., Desai, B., Iiams, V., Gerlt, J.A., Almo, S.C.

To be published

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.321 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	UP6

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4NX5 \| pdb_00004nx5	Download File View File

Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Fedorov, A.A., Fedorov, E.V., Chan, K.K., Gerlt, J.A., Almo, S.C.

To be published

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.591 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	CL, EDO, GOL, MG, UP6

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6ZX1 \| pdb_00006zx1	Download File View File

OMPD-domain of human UMPS in complex with 6-Aza-UMP at 1.0 Angstroms resolution

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	PRO, SO4, UP6

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DVJ | pdb_00001dvj

1KLY | pdb_00001kly

1KM0 | pdb_00001km0

1KM1 | pdb_00001km1

1KM2 | pdb_00001km2

1KM3 | pdb_00001km3

1KM5 | pdb_00001km5

1LOS | pdb_00001los

2GUU | pdb_00002guu

3G1A | pdb_00003g1a

3G24 | pdb_00003g24

3GDL | pdb_00003gdl

3GDT | pdb_00003gdt

3LLD | pdb_00003lld

3LLF | pdb_00003llf

3NQ6 | pdb_00003nq6

3PBU | pdb_00003pbu

3PBV | pdb_00003pbv

3PBW | pdb_00003pbw

3PBY | pdb_00003pby

3PC0 | pdb_00003pc0

3SY5 | pdb_00003sy5

4NX5 | pdb_00004nx5

6ZX1 | pdb_00006zx1