RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Scientific Name of the Source Organism = "Leishmania major"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 231 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (231)

Scientific Name of Source Organism

	Lacticaseibacillus casei (35)
	Plasmodium falciparum (30)
	Escherichia coli (22)
	Homo sapiens (22)
	Toxoplasma gondii (13)
	Mason-Pfizer monkey virus (9)
	Thermotoga maritima MSB8 (8)
	Cryptosporidium hominis (6)
	Thermotoga maritima (6)
	Mus musculus (5)

More...

Taxonomy

	Eukaryota (102)
	Bacteria (96)
	Duplodnaviria (13)
	Riboviria (11)
	Varidnaviria (4)
	Viruses incertae sedis (3)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (230)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (230)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (57)
	2.0 - 2.5 (87)
	2.5 - 3.0 (64)
	3.0 - 3.5 (12)
	3.5 - 4.0 (4)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (34)
	2000 - 2004 (30)
	2005 - 2009 (30)
	2010 - 2014 (53)
	2015 - 2019 (50)
	2020 - 2024 (29)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (160)
	Hydrolases (39)
	Oxidoreductases (34)
	Lyases (2)

Symmetry Type

	Cyclic (200)
	Asymmetric (17)
	Dihedral (20)

SCOP Classification

	Alpha and beta proteins (a+b) (133)
	Artifacts (21)
	Alpha and beta proteins (a/b) (15)
	All beta proteins (25)
	All alpha proteins (6)
	Small proteins (1)

AllSelected

1 to 25 of 231 Polymer Entities

Page 1 of 10

Sort by

Explore in 3D

1AIQ \| pdb_00001aiq	Download File View File

CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE R126E MUTANT

Strop, P., Montfort, W.R.

(1997) Protein Sci 6: 2504-2511

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	CB3, UMP

Explore in 3D

1AXW \| pdb_00001axw	Download File View File

E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH METHOTREXATE (MTX) AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)

Stout, T.J., Sage, C.R., Stroud, R.M.

To be published

Released	1998-10-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	MTX, UMP

Explore in 3D

1BID \| pdb_00001bid	Download File View File

E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DUMP

Stout, T.J., Sage, C.R., Stroud, R.M.

(1998) Structure 6: 839-848

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	UMP

Explore in 3D

1BP0 \| pdb_00001bp0	Download File View File

THYMIDYLATE SYNTHASE R23I MUTANT

Morse, R., Finer-Moore, J., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	2000-01-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	K, UMP

Explore in 3D

1BP6 \| pdb_00001bp6	Download File View File

THYMIDYLATE SYNTHASE R23I, R179T DOUBLE MUTANT

Morse, R.J., Finer-Moore, J.S., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	K, UMP

Explore in 3D

1BPJ \| pdb_00001bpj	Download File View File

THYMIDYLATE SYNTHASE R178T, R179T DOUBLE MUTANT

Morse, R.J., Finer-Moore, J.S., Stroud, R.M.

(2000) Biochemistry 39: 1011-1020

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lacticaseibacillus casei
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	K, UMP

Explore in 3D

1BQ1 \| pdb_00001bq1	Download File View File

E. COLI THYMIDYLATE SYNTHASE MUTANT N177A IN COMPLEX WITH CB3717 AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)

Reyes, C.L., Sage, C.R., Rutenber, E.E., Finer-Moore, J.S., Stroud, R.M.

(1998) J Mol Biology 284: 699-712

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	CB3, UMP

Explore in 3D

1CI7 \| pdb_00001ci7	Download File View File

TERNARY COMPLEX OF THYMIDYLATE SYNTHASE FROM PNEUMOCYSTIS CARINII

Anderson, A.C., O'Neil, R.H., Delano, W.L., Stroud, R.M.

(1999) Biochemistry 38: 13829-13836

Released	2000-04-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pneumocystis carinii
Macromolecule	PROTEIN (THYMIDYLATE SYNTHASE) (protein)
Unique Ligands	CB3, UMP

Explore in 3D

1DNA \| pdb_00001dna	Download File View File

D221(169)N MUTANT DOES NOT PROMOTE OPENING OF THE COFACTOR IMIDAZOLIDINE RING

Sage, C.R., Michelitsch, M.D., Finer-Moore, J., Stroud, R.M.

(1998) Biochemistry 37: 13893-13901

Released	1998-11-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	CB3, UMP

Explore in 3D

1F28 \| pdb_00001f28	Download File View File

CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE FROM PNEUMOCYSTIS CARINII BOUND TO DUMP AND BW1843U89

Anderson, A.C., O'Neil, R.H., Surti, T.S., Stroud, R.M.

(2001) Chem Biol 8: 445-457

Released	2001-06-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pneumocystis carinii
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	F89, UMP

Explore in 3D

1F7K \| pdb_00001f7k	Download File View File

CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS.

Prasad, G.S., Stura, E.A., Elder, J.H., Stout, C.D.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1100-1109

Released	2000-09-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Feline immunodeficiency virus
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	MG, UMP

Explore in 3D

1F7N \| pdb_00001f7n	Download File View File

CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS.

Prasad, G.S., Stura, E.A., Elder, J.H., Stout, C.D.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1100-1109

Released	2000-09-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Feline immunodeficiency virus
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	MG, UMP

Explore in 3D

1HVY \| pdb_00001hvy	Download File View File

Human thymidylate synthase complexed with dUMP and Raltitrexed, an antifolate drug, is in the closed conformation

Phan, J., Koli, S., Minor, W., Dunlap, R.B., Berger, S.H., Lebioda, L.

(2001) Biochemistry 40: 1897-1902

Released	2001-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	BME, D16, UMP

Explore in 3D

1I00 \| pdb_00001i00	Download File View File

CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE SYNTHASE, TERNARY COMPLEX WITH DUMP AND TOMUDEX

Almog, R.A., Waddling, C.A., Maley, F., Maley, G.F., Van Roey, P.

(2001) Protein Sci 10: 988-996

Released	2001-05-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	D16, UMP

Explore in 3D

1J3I \| pdb_00001j3i	Download File View File

Wild-type Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with WR99210, NADPH, and dUMP

Yuvaniyama, J., Chitnumsub, P., Kamchonwongpaisan, S., Vanichtanankul, J., Sirawaraporn, W., Taylor, P., Walkinshaw, M., Yuthavong, Y.

(2003) Nat Struct Biol 10: 357-365

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Plasmodium falciparum
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	NDP, UMP, WRA

Explore in 3D

1J3J \| pdb_00001j3j	Download File View File

Double mutant (C59R+S108N) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with pyrimethamine, NADPH, and dUMP

Yuvaniyama, J., Chitnumsub, P., Kamchonwongpaisan, S., Vanichtanankul, J., Sirawaraporn, W., Taylor, P., Walkinshaw, M., Yuthavong, Y.

(2003) Nat Struct Biol 10: 357-365

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Plasmodium falciparum
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	CP6, NDP, UMP

Explore in 3D

1J3K \| pdb_00001j3k	Download File View File

Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with WR99210, NADPH, and dUMP

Yuvaniyama, J., Chitnumsub, P., Kamchonwongpaisan, S., Vanichtanankul, J., Sirawaraporn, W., Taylor, P., Walkinshaw, M., Yuthavong, Y.

(2003) Nat Struct Biol 10: 357-365

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium falciparum
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	NDP, UMP, WRA