RCSB PDB: Search

6UE2 \| pdb_00006ue2	Download File View File

1.85 Angstrom Resolution Crystal Structure of Class D beta-lactamase from Clostridium difficile 630

Minasov, G., Shuvalova, L., Dubrovska, I., Rosas-Lemus, M., Jedrzejczak, R., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Clostridioides difficile 630
Macromolecule	Beta-lactamase (protein)
Unique Ligands	GOL, PEG, PGE, PPI

Explore in 3D

6W4H \| pdb_00006w4h	Download File View File

1.80 Angstrom Resolution Crystal Structure of NSP16 - NSP10 Complex from SARS-CoV-2

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Wiersum, G., Godzik, A., Jaroszewski, L., Stogios, P.J., Skarina, T., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) Sci Signal 13:

Released	2020-03-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	ACT, BDF, SAM, SO3, ZN

Explore in 3D

6W75 \| pdb_00006w75	Download File View File

1.95 Angstrom Resolution Crystal Structure of NSP10 - NSP16 Complex from SARS-CoV-2

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Wiersum, G., Godzik, A., Jaroszewski, L., Stogios, P.J., Skarina, T., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) Sci Signal 13:

Released	2020-03-25
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	FMT, NA, SAM, ZN

Explore in 3D

6WJT \| pdb_00006wjt	Download File View File

2.0 Angstrom Resolution Crystal Structure of Nsp16-Nsp10 Heterodimer from SARS-CoV-2 in Complex with S-Adenosyl-L-Homocysteine

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) Sci Signal 13:

Released	2020-04-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	FMT, NA, SAH, ZN

Explore in 3D

6WKQ \| pdb_00006wkq	Download File View File

1.98 Angstrom Resolution Crystal Structure of NSP16-NSP10 Heterodimer from SARS-CoV-2 in Complex with Sinefungin

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) Sci Signal 13:

Released	2020-04-29
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	FMT, NA, SFG, ZN

Explore in 3D

6WQ3 \| pdb_00006wq3	Download File View File

Crystal Structure of Nsp16-Nsp10 Heterodimer from SARS-CoV-2 in Complex with 7-methyl-GpppA and S-adenosyl-L-homocysteine.

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Brunzelle, J.S., Kiryukhina, O., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) Sci Signal 13:

Released	2020-05-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	GTA, M7G, SAH, SO4, ZN

Explore in 3D

6WRZ \| pdb_00006wrz	Download File View File

Crystal Structure of Nsp16-Nsp10 Heterodimer from SARS-CoV-2 with 7-methyl-GpppA and S-adenosyl-L-homocysteine in the Active Site and Sulfates in the mRNA Binding Groove.

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Brunzelle, J.S., Kiryukhina, O., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) Sci Signal 13:

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	CL, GTA, MGP, SAH, SO4, ZN

Explore in 3D

6WVN \| pdb_00006wvn	Download File View File

Crystal Structure of Nsp16-Nsp10 from SARS-CoV-2 in Complex with 7-methyl-GpppA and S-Adenosylmethionine.

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) Sci Signal 13:

Released	2020-05-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	ADE, CL, GTA, MGP, SAM, SO4, ZN

Explore in 3D

6WY4 \| pdb_00006wy4	Download File View File

Crystal Structure of Wild Type Class D beta-lactamase from Clostridium difficile 630

Minasov, G., Shuvalova, L., Dubrovska, I., Rosas-Lemus, M., Jedrzejczak, R., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridioides difficile 630
Macromolecule	Beta-lactamase (protein)
Unique Ligands	NA, PEG

Explore in 3D

6XKM \| pdb_00006xkm	Download File View File

Room Temperature Structure of SARS-CoV-2 NSP10/NSP16 Methyltransferase in a Complex with SAM Determined by Fixed-Target Serial Crystallography

Wilamowski, M., Sherrell, D.A., Minasov, G., Kim, Y., Shuvalova, L., Lavens, A., Chard, R., Rosas-Lemus, M., Maltseva, N., Jedrzejczak, R., Michalska, K., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) Proc Natl Acad Sci U S A 118:

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	CL, SAM, ZN

Explore in 3D

7JHE \| pdb_00007jhe	Download File View File

Room Temperature Structure of SARS-CoV-2 Nsp10/Nsp16 Methyltransferase in a Complex with 2'-O-methylated m7GpppA Cap-1 and SAH Determined by Fixed-Target Serial Crystallography

Wilamowski, M., Sherrell, D.A., Minasov, G., Kim, Y., Shuvalova, L., Lavens, A., Chard, R., Rosas-Lemus, M., Maltseva, N., Jedrzejczak, R., Michalska, K., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) Proc Natl Acad Sci U S A 118:

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	CL, MGP, SAH, V9G, ZN

Explore in 3D

7JIB \| pdb_00007jib	Download File View File

Room Temperature Crystal Structure of Nsp10/Nsp16 from SARS-CoV-2 with Substrates and Products of 2'-O-methylation of the Cap-1

Wilamowski, M., Minasov, G., Kim, Y., Sherrell, D.A., Shuvalova, L., Lavens, A., Chard, R., Rosas-Lemus, M., Maltseva, N., Jedrzejczak, R., Michalska, K., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) Proc Natl Acad Sci U S A 118:

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	CL, GTA, MGP, SAH, SAM, V9G, ZN

Explore in 3D

7JPE \| pdb_00007jpe	Download File View File

Room Temperature Structure of SARS-CoV-2 Nsp10/Nsp16 Methyltransferase in a Complex with m7GpppA Cap-0 and SAM Determined by Fixed-Target Serial Crystallography

Wilamowski, M., Sherrell, D.A., Minasov, G., Kim, Y., Shuvalova, L., Lavens, A., Chard, R., Rosas-Lemus, M., Maltseva, N., Jedrzejczak, R., Michalska, K., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) Proc Natl Acad Sci U S A 118:

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	GTA, M7G, SAM, ZN

Explore in 3D

7JYY \| pdb_00007jyy	Download File View File

Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA)pUpUpApApA (Cap-0) and S-Adenosylmethionine (SAM).

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) Sci Signal 14:

Released	2020-09-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein) RNA (5'-D((M7G))-R(PAPUPUP*A)-3') (nucleic acid)
Unique Ligands	CL, FMT, MG, NA, SAM, ZN

Explore in 3D

7JZ0 \| pdb_00007jz0	Download File View File

Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1) and S-Adenosyl-L-homocysteine (SAH).

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2020) bioRxiv

Released	2020-09-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein) RNA (5'-D((M7G))-R(P(A2M)PUPU)-3') (nucleic acid)
Unique Ligands	CL, FMT, NA, SAH, ZN

Explore in 3D

7K1U \| pdb_00007k1u	Download File View File

Crystal Structure of SrtB-anchored Collagen-binding Adhesin Fragment (residues 206-565) from Clostridioides difficile strain 630

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Wiersum, G., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2021-10-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridioides difficile 630
Macromolecule	Collagen-binding Adhesin (protein)
Unique Ligands	BTB

Explore in 3D

7KOA \| pdb_00007koa	Download File View File

Room Temperature Structure of SARS-CoV-2 Nsp10/16 Methyltransferase in a Complex with Cap-0 and SAM Determined by Pink-Beam Serial Crystallography

Wilamowski, M., Sherrell, D.A., Minasov, G., Shuvalova, L., Lavens, A., Henning, R., Maltseva, N., Rosas-Lemus, M., Kim, Y., Satchell, K.J.F., Srajer, V., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2020-11-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	GTA, SAM, ZN

Explore in 3D

7L5R \| pdb_00007l5r	Download File View File

Crystal Structure of the Oxacillin-hydrolyzing Class D Extended-spectrum Beta-lactamase OXA-14 from Pseudomonas aeruginosa

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Antimicrob Agents Chemother 66: e0098522-e0098522

Released	2021-12-29
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase (protein)
Unique Ligands	GOL, SO4

Explore in 3D

7L5T \| pdb_00007l5t	Download File View File

Crystal Structure of the Oxacillin-hydrolyzing Class D Extended-spectrum Beta-lactamase OXA-14 from Pseudomonas aeruginosa in Complex with Covalently Bound Clavulanic Acid

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID), Center for Membrane Proteins of Infectious Diseases (MPID)

To be published

Released	2021-12-29
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CL, ISS, SO4

Explore in 3D

7L5V \| pdb_00007l5v	Download File View File

Crystal Structure of the Class D Beta-lactamase OXA-935 from Pseudomonas aeruginosa, Monoclinic Crystal Form

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Antimicrob Agents Chemother 66: e0098522-e0098522

Released	2021-12-29
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase (protein)

Explore in 3D

7L6R \| pdb_00007l6r	Download File View File

Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1), S-Adenosyl-L-homocysteine (SAH) and Manganese (Mn).

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) Sci Signal 14:

Released	2021-01-06
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein) RNA (5'-D((M7G))-R(P(A2M)PUPUPAPA)-3') (nucleic acid)
Unique Ligands	BDF, CL, GLC, MN, SAH, SO4, ZN

Explore in 3D

7L6T \| pdb_00007l6t	Download File View File

Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1), S-Adenosyl-L-homocysteine (SAH) and two Magnesium (Mg) ions.

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) Sci Signal 14:

Released	2021-01-06
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein) RNA (5'-D((M7G))-R(P(A2M)PUPUP*A)-3') (nucleic acid)
Unique Ligands	BDF, CL, FMT, GLC, MG, SAH, ZN

Explore in 3D

7N1M \| pdb_00007n1m	Download File View File

Crystal Structure of the Class D Beta-lactamase OXA-935 from Pseudomonas aeruginosa, Orthorhombic Crystal Form

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Brunzelle, J.B., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Antimicrob Agents Chemother 66: e0098522-e0098522

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase OXA-935 (protein)
Unique Ligands	SO4

Explore in 3D

7RL8 \| pdb_00007rl8	Download File View File

Crystal Structure of C79A Mutant of Class D beta-lactamase from Clostridium difficile 630

Minasov, G., Shuvalova, L., Dubrovska, I., Rosas-Lemus, M., Jedrzejczak, R., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2021-08-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Clostridioides difficile 630
Macromolecule	Beta-lactamase (protein)
Unique Ligands	PEG, SO4

Explore in 3D

7RLR \| pdb_00007rlr	Download File View File

Crystal Structure of K83A Mutant of Class D beta-lactamase from Clostridium difficile 630

Minasov, G., Shuvalova, L., Dubrovska, I., Rosas-Lemus, M., Jedrzejczak, R., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2021-08-11
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Clostridioides difficile 630
Macromolecule	Beta-lactamase (protein)
Unique Ligands	ACT, CL, EDO, NA

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6UE2 | pdb_00006ue2

6W4H | pdb_00006w4h

6W75 | pdb_00006w75

6WJT | pdb_00006wjt

6WKQ | pdb_00006wkq

6WQ3 | pdb_00006wq3

6WRZ | pdb_00006wrz

6WVN | pdb_00006wvn

6WY4 | pdb_00006wy4

6XKM | pdb_00006xkm

7JHE | pdb_00007jhe

7JIB | pdb_00007jib

7JPE | pdb_00007jpe

7JYY | pdb_00007jyy

7JZ0 | pdb_00007jz0

7K1U | pdb_00007k1u

7KOA | pdb_00007koa

7L5R | pdb_00007l5r

7L5T | pdb_00007l5t

7L5V | pdb_00007l5v

7L6R | pdb_00007l6r

7L6T | pdb_00007l6t

7N1M | pdb_00007n1m

7RL8 | pdb_00007rl8

7RLR | pdb_00007rlr