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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "HDAC8"

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Search Summary

This query matches 75 Structures.

Refinements

Structure Determination Methodology

experimental (75)

Scientific Name of Source Organism

	Homo sapiens (47)
	Schistosoma mansoni (28)
	synthetic construct (4)
	unidentified (2)
	Helicoma ambiens (1)
	Symploca (1)

Taxonomy

	Eukaryota (75)
	other sequences (4)
	unclassified sequences (2)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (75)

Polymer Entity Type

Protein (75)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (35)
	2.0 - 2.5 (23)
	2.5 - 3.0 (12)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (7)
	2010 - 2014 (15)
	2015 - 2019 (40)
	2020 - 2024 (12)

Enzyme Classification Name

Hydrolases (75)

Symmetry Type

	Asymmetric (69)
	Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a/b) (36)
	Artifacts (19)

AllSelected

1 to 25 of 75 Structures

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1VKG \| pdb_00001vkg	Download File View File

Crystal Structure of Human HDAC8 complexed with CRA-19156

Somoza, J.R., Skene, R.J., Katz, B.A., Mol, C., Ho, J.D., Jennings, A.J., Luong, C., Arvai, A., Buggy, J.J., Chi, E., Tang, J., Sang, B.-C., Verner, E., Wynands, R., Leahy, E.M., Dougan, D.R., Snell, G., Navre, M., Knuth, M.W., Swanson, R.V., McRee, D.E., Tari, L.W.

(2004) Structure 12: 1325-1334

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	CRI, NA, ZN

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3EW8 \| pdb_00003ew8	Download File View File

Crystal Structure Analysis of human HDAC8 D101L variant

Dowling, D.P., Gantt, S.L., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2008) Biochemistry 47: 13554-13563

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, BME, GOL, K, ZN

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3EWF \| pdb_00003ewf	Download File View File

Crystal Structure Analysis of human HDAC8 H143A variant complexed with substrate.

Dowling, D.P., Gantt, S.L., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2008) Biochemistry 47: 13554-13563

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 8 (protein) PEPTIDIC SUBSTRATE (protein)
Unique Ligands	K, MCM, ZN

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3EZP \| pdb_00003ezp	Download File View File

Crystal Structure Analysis of human HDAC8 D101N variant

Dowling, D.P., Gantt, S.L., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2008) Biochemistry 47: 13554-13563

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, BME, K, ZN

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3EZT \| pdb_00003ezt	Download File View File

Crystal Structure Analysis of Human HDAC8 D101E Variant

Dowling, D.P., Gantt, S.L., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2008) Biochemistry 47: 13554-13563

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, BME, K, ZN

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3F06 \| pdb_00003f06	Download File View File

Crystal Structure Analysis of Human HDAC8 D101A Variant.

Dowling, D.P., Gantt, S.L., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2008) Biochemistry 47: 13554-13563

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, BME, K, ZN

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3F07 \| pdb_00003f07	Download File View File

Crystal Structure Analysis of Human HDAC8 complexed with APHA in a new monoclinic crystal form

Dowling, D.P., Gantt, S.L., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2008) Biochemistry 47: 13554-13563

Released	2008-12-30
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	AGE, K, ZN

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3F0R \| pdb_00003f0r	Download File View File

Crystal Structure Analysis of Human HDAC8 complexed with trichostatin A in a new monoclinic crystal form

Dowling, D.P., Gantt, S.L., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2008) Biochemistry 47: 13554-13563

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	K, TSN, ZN

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3MZ3 \| pdb_00003mz3	Download File View File

Crystal structure of Co2+ HDAC8 complexed with M344

Dowling, D.P., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2010) Biochemistry 49: 5048-5056

Released	2010-06-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, CO, K

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3MZ4 \| pdb_00003mz4	Download File View File

Crystal structure of D101L Mn2+ HDAC8 complexed with M344

Dowling, D.P., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2010) Biochemistry 49: 5048-5056

Released	2010-06-23
Method	X-RAY DIFFRACTION 1.845 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, GOL, K, MN

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3MZ6 \| pdb_00003mz6	Download File View File

Crystal structure of D101L Fe2+ HDAC8 complexed with M344

Dowling, D.P., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2010) Biochemistry 49: 5048-5056

Released	2010-06-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, FE2, K

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3MZ7 \| pdb_00003mz7	Download File View File

Crystal structure of D101L Co2+ HDAC8 complexed with M344

Dowling, D.P., Gattis, S.G., Fierke, C.A., Christianson, D.W.

(2010) Biochemistry 49: 5048-5056

Released	2010-06-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, CO, GOL, K

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3RQD \| pdb_00003rqd	Download File View File

Ideal Thiolate-Zinc Coordination Geometry in Depsipeptide Binding to Histone Deacetylase 8

Cole, K.E., Dowling, D.P., Christianson, D.W.

(2011) J Am Chem Soc 133: 12474-12477

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.143 Å
Organisms	Homo sapiens Symploca
Macromolecule	Histone deacetylase 8 (protein) Largazole (protein)
Unique Ligands	K, ZN

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3SFF \| pdb_00003sff	Download File View File

Crystal Structure of Human HDAC8 Inhibitor Complex, an Amino Acid Derived Inhibitor

Stams, T., Vash, B.

(2011) Bioorg Med Chem 19: 4626-4634

Released	2011-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	0DI, K, ZN

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3SFH \| pdb_00003sfh	Download File View File

Crystal Structure of Human HDAC8 Inhibitor Complex, an Amino Acid Derived Inhibitor

Stams, T., Vash, B.

(2011) Bioorg Med Chem 19: 4626-4634

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	1DI, ACT, K, ZN

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4QA0 \| pdb_00004qa0	Download File View File

Crystal structure of C153F HDAC8 in complex with SAHA

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.242 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, SHH, ZN

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4QA1 \| pdb_00004qa1	Download File View File

Crystal structure of A188T HDAC8 in complex with M344

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, GOL, K, ZN

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4QA2 \| pdb_00004qa2	Download File View File

Crystal structure of I243N HDAC8 in complex with SAHA

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.377 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, SHH, ZN

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4QA3 \| pdb_00004qa3	Download File View File

Crystal structure of T311M HDAC8 in complex with Trichostatin A (TSA)

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.876 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	GOL, K, TSN, ZN

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4QA4 \| pdb_00004qa4	Download File View File

Crystal structure of H334R HDAC8 in complex with M344

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein)
Unique Ligands	B3N, GOL, K, ZN

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4QA5 \| pdb_00004qa5	Download File View File

Crystal structure of A188T/Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein) tetrapeptide substrate (protein)
Unique Ligands	GOL, K, MCM, MG, ZN

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4QA6 \| pdb_00004qa6	Download File View File

Crystal structure of I243N/Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.053 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein) tetrapeptide substrate (protein)
Unique Ligands	GOL, K, MCM, ZN

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4QA7 \| pdb_00004qa7	Download File View File

Crystal structure of H334R/Y306F HDAC8 in complex with a tetrapeptide substrate

Decroos, C., Bowman, C.B., Moser, J.-A.S., Christianson, K.E., Deardorff, M.A., Christianson, D.W.

(2014) ACS Chem Biol 9: 2157-2164

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 8 (protein) tetrapeptide substrate (protein)
Unique Ligands	GOL, K, MCM, ZN