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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "ctaD"

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Cereibacter sphaeroides (6)
	Cereibacter sphaeroides 2.4.1 (4)
	Corynebacterium glutamicum ATCC 13032 (3)
	Mycobacterium tuberculosis variant bovis BCG (1)

Taxonomy

Bacteria (14)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	2.0 - 2.5 (8)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Translocases (14)
	Oxidoreductases (10)

Membrane Protein Annotation

	MemProtMD (14)
	PDBTM (14)
	OPM (4)
	mpstruc (4)

Symmetry Type

	Asymmetric (10)
	Cyclic (4)

SCOP Classification

	Membrane and cell surface proteins and peptides (9)
	All beta proteins (9)
	Artifacts (9)

AllSelected

1 to 14 of 14 Structures

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Explore in 3D

2GSM \| pdb_00002gsm	Download File View File

Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides

Qin, L., Hiser, C., Mulichak, A., Garavito, R.M., Ferguson-Miller, S.

(2006) Proc Natl Acad Sci U S A 103: 16117-16122

Released	2006-10-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CA, CD, CU, DMU, HEA, MG, OH, TRD

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3DTU \| pdb_00003dtu	Download File View File

Catalytic core subunits (I and II) of cytochrome c oxidase from Rhodobacter sphaeroides complexed with deoxycholic acid

Qin, L., Mills, D.A., Buhrow, L., Hiser, C., Ferguson-Miller, S.

(2008) Biochemistry 47: 9931-9933

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CA, CD, CU, DMU, DXC, HEA, HTO, MG, OH, PO4, TRD

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3FYE \| pdb_00003fye	Download File View File

Catalytic core subunits (I and II) of cytochrome c oxidase from Rhodobacter sphaeroides in the reduced state

Qin, L., Mills, D.A., Proshlyakov, D.A., Hiser, C., Ferguson-Miller, S.

(2009) Biochemistry 48: 5121-5130

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Cytochrome C oxidase subunit 1 (protein) Cytochrome C oxidase subunit 2 (protein)
Unique Ligands	CA, CD, CU1, DMU, HEA, HTO, MG, TRD, UNX

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3FYI \| pdb_00003fyi	Download File View File

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides in the reduced state bound with cyanide

Qin, L., Mills, D.A., Proshlyakov, D.A., Hiser, C., Ferguson-Miller, S.

(2009) Biochemistry 48: 5121-5130

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CA, CD, CU1, CYN, DMU, HEA, HTO, MG, TRD

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3OM3 \| pdb_00003om3	Download File View File

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with K362M mutation in the reduced state

Liu, J., Qin, L., Ferguson-Miller, S.

(2011) Proc Natl Acad Sci U S A 108: 1284-1289

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Cytochrome c oxidase subunit 2 (protein) Cytochrome c oxidase, aa3 type, subunit I (protein)
Unique Ligands	CA, CD, CU1, DMU, HEA, HTH, MG, TRD

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3OMA \| pdb_00003oma	Download File View File

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with K362M mutation

Liu, J., Qin, L., Ferguson-Miller, S.

(2011) Proc Natl Acad Sci U S A 108: 1284-1289

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Cytochrome c oxidase subunit 2 (protein) Cytochrome c oxidase, aa3 type, subunit I (protein)
Unique Ligands	CA, CD, CU, CU1, DMU, HEA, HTH, MG, OH, TRD

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3OMI \| pdb_00003omi	Download File View File

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with D132A mutation

Liu, J., Qin, L., Ferguson-Miller, S.

(2011) Proc Natl Acad Sci U S A 108: 1284-1289

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Cytochrome c oxidase subunit 2 (protein) Cytochrome c oxidase, aa3 type, subunit I (protein)
Unique Ligands	CA, CD, CL, CU, CU1, DMU, HEA, HTH, MG, OH, TRD

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3OMN \| pdb_00003omn	Download File View File

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with D132A mutation in the reduced state

Liu, J., Qin, L., Ferguson-Miller, S.

(2011) Proc Natl Acad Sci U S A 108: 1284-1289

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Cytochrome c oxidase subunit 2 (protein) Cytochrome c oxidase, aa3 type, subunit I (protein)
Unique Ligands	CA, CD, CL, CU1, DMU, HEA, HTH, MG, OH, TRD

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5WEH \| pdb_00005weh	Download File View File

Cytochrome c oxidase from Rhodobacter sphaeroides in the reduced state

Liu, J., Ferguson-Miller, F., Ling, Q., Hiser, C.

(2017) Biochem Soc Trans 45: 1087-1095

Released	2017-09-13
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Aa3-type cytochrome c oxidase subunit IV (protein) Cytochrome c oxidase polypeptide III (Cytochrome AA3 subunit 3) (protein) Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	3PE, CA, CU1, HEA, LMU, MG

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6CI0 \| pdb_00006ci0	Download File View File

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with E101A (II) mutation

Liu, J., Hiser, C., Ferguson-Miller, S.

(2018) Biochim Biophys Acta 1859: 725-733

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Cytochrome c oxidase subunit 1 (protein) Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CA, CD, CU, DMU, HEA, HTH, K, MG, TRD, TRS
Unique branched monosaccharides	GLC

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7Q21 \| pdb_00007q21	Download File View File

III2-IV2 respiratory supercomplex from Corynebacterium glutamicum

Kovalova, T., Moe, A., Krol, S., Yanofsky, D.J., Bott, M., Sjostrand, D., Rubinstein, J.L., Hogbom, M., Brzezinski, P.

(2022) Structure 30: 338

Released	2022-02-02
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Unique protein chains: 14
Unique Ligands	7PH, 9XX, 9YF, CA, CDL, CU, FES, HAS, HEC, HEM, MG, MQ9, PLM, TRD, TWT

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7QHM \| pdb_00007qhm	Download File View File

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (stigmatellin and azide bound)

Kao, W.-C., Hunte, C.

(2022) Nat Commun 13: 545-545

Released	2022-05-18
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, 9YF, AZI, CA, CDL, CU, CUA, DGA, FES, HAS, HEC, HEM, IX7, IZL, LMT, LYC, MN, MQ9, OXY, PLM, SMA

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7QHO \| pdb_00007qho	Download File View File

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (as isolated)

Kao, W.-C., Hunte, C.

(2022) Nature Communications 13: 545

Released	2022-05-18
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, 3PH, 9YF, CA, CDL, CU, CUA, DGA, FES, HAS, HEC, HEM, IX7, IZL, LMT, LYC, MN, MQ9, PLM

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8HCR \| pdb_00008hcr	Download File View File

Cryo-EM structure of the Mycobacterium tuberculosis cytochrome bcc:aa3 supercomplex and a novel inhibitor targeting subunit cytochrome cI

Mathiyazakan, V., Gruber, G.

(2023) Antimicrob Agents Chemother 67: e0153122-e0153122

Released	2023-05-03
Method	ELECTRON MICROSCOPY
Organisms	Mycobacterium tuberculosis variant bovis BCG
Macromolecule	Unique protein chains: 9
Unique Ligands	FES, HEA, HEC, HEM

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2GSM | pdb_00002gsm

Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides

3DTU | pdb_00003dtu

Catalytic core subunits (I and II) of cytochrome c oxidase from Rhodobacter sphaeroides complexed with deoxycholic acid

3FYE | pdb_00003fye

Catalytic core subunits (I and II) of cytochrome c oxidase from Rhodobacter sphaeroides in the reduced state

3FYI | pdb_00003fyi

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides in the reduced state bound with cyanide

3OM3 | pdb_00003om3

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with K362M mutation in the reduced state

3OMA | pdb_00003oma

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with K362M mutation

3OMI | pdb_00003omi

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with D132A mutation

3OMN | pdb_00003omn

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with D132A mutation in the reduced state

5WEH | pdb_00005weh

Cytochrome c oxidase from Rhodobacter sphaeroides in the reduced state

6CI0 | pdb_00006ci0

Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with E101A (II) mutation

7Q21 | pdb_00007q21

III2-IV2 respiratory supercomplex from Corynebacterium glutamicum

7QHM | pdb_00007qhm

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (stigmatellin and azide bound)

7QHO | pdb_00007qho

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (as isolated)

8HCR | pdb_00008hcr

Cryo-EM structure of the Mycobacterium tuberculosis cytochrome bcc:aa3 supercomplex and a novel inhibitor targeting subunit cytochrome cI

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2GSM | pdb_00002gsm

3DTU | pdb_00003dtu

3FYE | pdb_00003fye

3FYI | pdb_00003fyi

3OM3 | pdb_00003om3

3OMA | pdb_00003oma

3OMI | pdb_00003omi

3OMN | pdb_00003omn

5WEH | pdb_00005weh

6CI0 | pdb_00006ci0

7Q21 | pdb_00007q21

7QHM | pdb_00007qhm

7QHO | pdb_00007qho

8HCR | pdb_00008hcr