RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy ID (Full Lineage) = "571"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 106 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (106)

Scientific Name of Source Organism

	Klebsiella oxytoca (105)
	Klebsiella oxytoca 10-5243 (1)

Taxonomy

Bacteria (106)

Experimental Method

	X-RAY DIFFRACTION (78)
	ELECTRON MICROSCOPY (24)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (89)
	DNA (11)
	RNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (42)
	2.0 - 2.5 (19)
	2.5 - 3.0 (17)
	3.0 - 3.5 (10)
	3.5 - 4.0 (12)
	> 4.5 (1)

Release Date

	2000 - 2004 (21)
	2005 - 2009 (7)
	2010 - 2014 (6)
	2015 - 2019 (24)
	2020 - 2024 (47)
	2025 - 2029 (1)

Enzyme Classification Name

	Lyases (39)
	Oxidoreductases (6)
	Hydrolases (7)

Membrane Protein Annotation

	mpstruc (6)
	MemProtMD (5)
	PDBTM (5)
	OPM (3)

Symmetry Type

	Cyclic (58)
	Asymmetric (50)
	Dihedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	All alpha proteins (11)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (3)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 106 Polymer Entities

Page 1 of 5

Sort by

Explore in 3D

1DIO: Entity 1	Download File View File

DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.

(1999) Structure 7: 997-1008

Released	2000-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROTEIN (DIOL DEHYDRATASE)

Explore in 3D

1DIO: Entity 2	Download File View File

DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.

(1999) Structure 7: 997-1008

Released	2000-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROTEIN (DIOL DEHYDRATASE)

Explore in 3D

1DIO: Entity 3	Download File View File

DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Tobimatsu, T., Toraya, T., Suto, K., Morimoto, Y., Yasuoka, N.

(1999) Structure 7: 997-1008

Released	2000-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROTEIN (DIOL DEHYDRATASE)

Explore in 3D

1EEX: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EEX: Entity 2	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EEX: Entity 3	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA

Shibata, N., Masuda, J., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EGM: Entity 1	Download File View File

CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EGM: Entity 2	Download File View File

CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EGM: Entity 3	Download File View File

CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EGV: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EGV: Entity 2	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1EGV: Entity 3	Download File View File

CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.

Masuda, J., Shibata, N., Toraya, T., Morimoto, Y., Yasuoka, N.

(2000) Structure 8: 775-788

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	PROPANEDIOL DEHYDRATASE

Explore in 3D

1IWB: Entity 1	Download File View File

Crystal structure of diol dehydratase

Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.

(2002) Biochemistry 41: 12607-12617

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	DIOL DEHYDRATASE alpha chain

Explore in 3D

1IWB: Entity 2	Download File View File

Crystal structure of diol dehydratase

Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.

(2002) Biochemistry 41: 12607-12617

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	DIOL DEHYDRATASE beta chain

Explore in 3D

1IWB: Entity 3	Download File View File

Crystal structure of diol dehydratase

Shibata, N., Masuda, J., Morimoto, Y., Yasuoka, N., Toraya, T.

(2002) Biochemistry 41: 12607-12617

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	DIOL DEHYDRATASE gamma chain

Explore in 3D

1UC4: Entity 1	Download File View File

Structure of diol dehydratase complexed with (S)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biological Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase alpha subunit

Explore in 3D

1UC4: Entity 2	Download File View File

Structure of diol dehydratase complexed with (S)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biological Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase beta subunit

Explore in 3D

1UC4: Entity 3	Download File View File

Structure of diol dehydratase complexed with (S)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biological Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase gamma subunit

Explore in 3D

1UC5: Entity 1	Download File View File

Structure of diol dehydratase complexed with (R)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biological Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, D [auth L]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase alpha subunit

Explore in 3D

1UC5: Entity 2	Download File View File

Structure of diol dehydratase complexed with (R)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biological Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	B, E
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase beta subunit

Explore in 3D

1UC5: Entity 3	Download File View File

Structure of diol dehydratase complexed with (R)-1,2-propanediol

Shibata, N., Nakanishi, Y., Fukuoka, M., Yamanishi, M., Yasuoka, N., Toraya, T.

(2003) J Biological Chem 278: 22717-22725

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	C [auth G], F [auth M]
Organism	Klebsiella oxytoca
Macromolecule	diol dehydrase gamma subunit

Explore in 3D

1ZRR: Entity 1	Download File View File

Residual Dipolar Coupling Refinement of Acireductone Dioxygenase from Klebsiella

Pochapsky, T.C., Pochapsky, S.S., Ju, T., Hoefler, C., Liang, J.

(2006) J Biomol NMR 34: 117-127

Released	2005-12-06
Method	SOLUTION NMR
Chain ID	A
Organism	Klebsiella oxytoca
Macromolecule	E-2/E-2' protein

Explore in 3D

2D0O: Entity 1	Download File View File

Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, C
Organism	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor large subunit

Explore in 3D

2D0O: Entity 2	Download File View File

Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	B, D
Organism	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor small subunit

Explore in 3D

2D0P: Entity 1	Download File View File

Structure of diol dehydratase-reactivating factor in nucleotide free form

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A, C
Organism	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor large subunit

1 to 25 of 106 Polymer Entities

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification