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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "[Clostridium] symbiosum"

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	[Clostridium] symbiosum (17)
	[Clostridium] symbiosum ATCC 14940 (3)
	Escherichia coli (1)

Taxonomy

Bacteria (20)

Experimental Method

	X-RAY DIFFRACTION (19)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (4)
	2.5 - 3.0 (9)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (4)
	2005 - 2009 (9)
	2010 - 2014 (1)

Enzyme Classification Name

	Transferases (8)
	Oxidoreductases (5)
	Lyases (4)

Symmetry Type

	Cyclic (9)
	Dihedral (10)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (7)

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1 to 20 of 20 Structures

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1AUP \| pdb_00001aup	Download File View File

GLUTAMATE DEHYDROGENASE

Baker, P.J., Waugh, M.L., Stillman, T.J., Turnbull, A.P., Rice, D.W.

(1997) Biochemistry 36: 16109-16115

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	[Clostridium] symbiosum
Macromolecule	NAD-SPECIFIC GLUTAMATE DEHYDROGENASE (protein)

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1BGV \| pdb_00001bgv	Download File View File

GLUTAMATE DEHYDROGENASE

Stillman, T.J., Baker, P.J., Britton, K.L., Rice, D.W.

(1993) J Mol Biology 234: 1131-1139

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	[Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)
Unique Ligands	GLU

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1DIK \| pdb_00001dik	Download File View File

PYRUVATE PHOSPHATE DIKINASE

Herzberg, O., Chen, C.C.H.

(1996) Proc Natl Acad Sci U S A 93: 2652-2657

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PYRUVATE PHOSPHATE DIKINASE (protein)
Unique Ligands	SO4

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1GGO \| pdb_00001ggo	Download File View File

T453A MUTANT OF PYRUVATE, PHOSPHATE DIKINASE

Li, Z., Herzberg, O.

(2000) J Biological Chem 275: 41156-41165

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PROTEIN (PYRUVATE, PHOSPHATE DIKINASE) (protein)
Unique Ligands	SO4

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1HRD \| pdb_00001hrd	Download File View File

GLUTAMATE DEHYDROGENASE

Britton, K.L., Baker, P.J., Stillman, T.J., Rice, D.W.

(1995) Structure 3: 1147-1158

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	[Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)

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1JDE \| pdb_00001jde	Download File View File

K22A mutant of pyruvate, phosphate dikinase

Ye, D., Wei, M., McGuire, M., Huang, K., Kapadia, G., Herzberg, O., Martin, B.M., Dunaway-Mariano, D.

(2001) J Biological Chem 276: 37630-37639

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PYRUVATE, PHOSPHATE DIKINASE (protein)
Unique Ligands	SO4

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1K89 \| pdb_00001k89	Download File View File

K89L MUTANT OF GLUTAMATE DEHYDROGENASE

Stillman, T.J., Migueis, A.M.B., Wang, X.G., Baker, P.J., Britton, K.L., Engel, P.C., Rice, D.W.

(1999) J Mol Biology 285: 875-885

Released	1999-01-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	[Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)

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1KBL \| pdb_00001kbl	Download File View File

PYRUVATE PHOSPHATE DIKINASE

Herzberg, O., Chen, C.C., Liu, S.

(2002) Biochemistry 41: 780-787

Released	2002-01-30
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PYRUVATE PHOSPHATE DIKINASE (protein)
Unique Ligands	NH4, SO4

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1KC7 \| pdb_00001kc7	Download File View File

Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate

Chen, C.C., Howard, A., Herzberg, O.

(2002) Biochemistry 41: 780-787

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	[Clostridium] symbiosum
Macromolecule	pyruvate phosphate dikinase (protein)
Unique Ligands	MG, PPR, SO4

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2DIK \| pdb_00002dik	Download File View File

R337A MUTANT OF PYRUVATE PHOSPHATE DIKINASE

Huang, K., Herzberg, O.

(1998) Biochemistry 37: 13463-13474

Released	1999-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PROTEIN (PYRUVATE PHOSPHATE DIKINASE) (protein)
Unique Ligands	SO4

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2FM4 \| pdb_00002fm4	Download File View File

NMR structure of the phosphoryl carrier domain of pyruvate phosphate dikinase

Ames, J.B.

(2006) Biochemistry 45: 1702-1711

Released	2006-10-03
Method	SOLUTION NMR
Organisms	[Clostridium] symbiosum
Macromolecule	Pyruvate, phosphate dikinase (protein)

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2R82 \| pdb_00002r82	Download File View File

Pyruvate phosphate dikinase (PPDK) triple mutant R219E/E271R/S262D adapts a second conformational state

Lim, K., Read, R.J., Chen, C.C., Herzberg, O.

(2007) Biochemistry 46: 14845-14853

Released	2008-01-01
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	[Clostridium] symbiosum
Macromolecule	Pyruvate, phosphate dikinase (protein)
Unique Ligands	SO4

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2YFH \| pdb_00002yfh	Download File View File

Structure of a Chimeric Glutamate Dehydrogenase

Oliveira, T., Panjikar, S., Sharkey, M.A., Carrigan, J.B., Hamza, M., Engel, P.C., Khan, A.R.

(2016) Acta Crystallogr F Struct Biol Commun 72: 462

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.695 Å
Organisms	Escherichia coli [Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE, NAD-SPECIFIC GLUTAMATE DEHYDROGENASE, GLUTAMATE DEHYDROGENASE (protein)

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3FN2 \| pdb_00003fn2	Download File View File

Crystal structure of a putative sensor histidine kinase domain from Clostridium symbiosum ATCC 14940

Cuff, M.E., Tesar, C., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-01-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	[Clostridium] symbiosum ATCC 14940
Macromolecule	Putative sensor histidine kinase domain (protein)
Unique Ligands	EDO, K, PO4

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3GF3 \| pdb_00003gf3	Download File View File

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with glutaconyl-coA

Kress, D., Brugel, D., Buckel, W., Essen, L.-O.

(2009) J Biological Chem 284: 28401-28409

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	[Clostridium] symbiosum
Macromolecule	Glutaconyl-CoA decarboxylase subunit A (protein)
Unique Ligands	CL, COO

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3GF7 \| pdb_00003gf7	Download File View File

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum apoprotein

Kress, D., Brugel, D., Buckel, W., Essen, L.-O.

(2009) J Biological Chem 284: 28401-28409

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	[Clostridium] symbiosum
Macromolecule	Glutaconyl-CoA decarboxylase subunit A (protein)
Unique Ligands	SO4

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3GKU \| pdb_00003gku	Download File View File

Crystal structure of a probable RNA-binding protein from Clostridium symbiosum ATCC 14940

Tan, K., Keigher, L., Jedrzejczak, R., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	[Clostridium] symbiosum ATCC 14940
Macromolecule	Probable RNA-binding protein (protein)

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3GLM \| pdb_00003glm	Download File View File

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with crotonyl-coA

Kress, D., Brugel, D., Buckel, W., Essen, L.-O.

(2009) J Biological Chem 284: 28401-28409

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	[Clostridium] symbiosum
Macromolecule	Glutaconyl-CoA decarboxylase subunit A (protein)
Unique Ligands	CL, COO

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3GMA \| pdb_00003gma	Download File View File

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with glutaryl-CoA

Kress, D., Brugel, D., Buckel, W., Essen, L.-O.

(2009) J Biological Chem 284: 28401-28409

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	[Clostridium] symbiosum
Macromolecule	Glutaconyl-CoA decarboxylase subunit A (protein)
Unique Ligands	GRA

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3HDT \| pdb_00003hdt	Download File View File

Crystal structure of putative kinase from Clostridium symbiosum ATCC 14940

Chang, C., Freeman, L., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-05-26
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	[Clostridium] symbiosum ATCC 14940
Macromolecule	putative kinase (protein)
Unique Ligands	CL, PO4

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AUP | pdb_00001aup

GLUTAMATE DEHYDROGENASE

1BGV | pdb_00001bgv

GLUTAMATE DEHYDROGENASE

1DIK | pdb_00001dik

PYRUVATE PHOSPHATE DIKINASE

1GGO | pdb_00001ggo

T453A MUTANT OF PYRUVATE, PHOSPHATE DIKINASE

1HRD | pdb_00001hrd

GLUTAMATE DEHYDROGENASE

1JDE | pdb_00001jde

K22A mutant of pyruvate, phosphate dikinase

1K89 | pdb_00001k89

K89L MUTANT OF GLUTAMATE DEHYDROGENASE

1KBL | pdb_00001kbl

PYRUVATE PHOSPHATE DIKINASE

1KC7 | pdb_00001kc7

Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate

2DIK | pdb_00002dik

R337A MUTANT OF PYRUVATE PHOSPHATE DIKINASE

2FM4 | pdb_00002fm4

NMR structure of the phosphoryl carrier domain of pyruvate phosphate dikinase

2R82 | pdb_00002r82

Pyruvate phosphate dikinase (PPDK) triple mutant R219E/E271R/S262D adapts a second conformational state

2YFH | pdb_00002yfh

Structure of a Chimeric Glutamate Dehydrogenase

3FN2 | pdb_00003fn2

Crystal structure of a putative sensor histidine kinase domain from Clostridium symbiosum ATCC 14940

3GF3 | pdb_00003gf3

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with glutaconyl-coA

3GF7 | pdb_00003gf7

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum apoprotein

3GKU | pdb_00003gku

Crystal structure of a probable RNA-binding protein from Clostridium symbiosum ATCC 14940

3GLM | pdb_00003glm

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with crotonyl-coA

3GMA | pdb_00003gma

Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with glutaryl-CoA

3HDT | pdb_00003hdt

Crystal structure of putative kinase from Clostridium symbiosum ATCC 14940

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AUP | pdb_00001aup

1BGV | pdb_00001bgv

1DIK | pdb_00001dik

1GGO | pdb_00001ggo

1HRD | pdb_00001hrd

1JDE | pdb_00001jde

1K89 | pdb_00001k89

1KBL | pdb_00001kbl

1KC7 | pdb_00001kc7

2DIK | pdb_00002dik

2FM4 | pdb_00002fm4

2R82 | pdb_00002r82

2YFH | pdb_00002yfh

3FN2 | pdb_00003fn2

3GF3 | pdb_00003gf3

3GF7 | pdb_00003gf7

3GKU | pdb_00003gku

3GLM | pdb_00003glm

3GMA | pdb_00003gma

3HDT | pdb_00003hdt