RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Acetabularia acetabulum"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

Acetabularia acetabulum (4)

Taxonomy

Eukaryota (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (3)

Membrane Protein Annotation

	MemProtMD (4)
	PDBTM (4)
	OPM (2)
	mpstruc (1)

Symmetry Type

	Asymmetric (4)
	Cyclic (1)

AllSelected

1 to 4 of 4 Structures

Page 1 of 1

Sort by

Explore in 3D

3AM6 \| pdb_00003am6	Download File View File

Crystal structure of the proton pumping rhodopsin AR2 from marine alga Acetabularia acetabulum

Wada, T., Yokoyama, S.

(2011) J Mol Biology 411: 986-998

Released	2011-07-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Acetabularia acetabulum
Macromolecule	rhodopsin-2 (protein)
Unique Ligands	CLR, RET

Explore in 3D

5AWZ \| pdb_00005awz	Download File View File

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.57 angstrom

Furuse, M., Hosaka, T., Kimura-Someya, T., Yokoyama, S., Shirouzu, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2203-2216

Released	2015-08-26
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Acetabularia acetabulum
Macromolecule	Rhodopsin I (protein)
Unique Ligands	C14, D10, D12, OCT, OLB, RET

Explore in 3D

5AX0 \| pdb_00005ax0	Download File View File

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.52 angstrom

Furuse, M., Hosaka, T., Kimura-Someya, T., Yokoyama, S., Shirouzu, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2203-2216

Released	2015-08-26
Method	X-RAY DIFFRACTION 1.521 Å
Organisms	Acetabularia acetabulum
Macromolecule	Rhodopsin I (protein)
Unique Ligands	C14, D10, D12, OLB, R16, RET

Explore in 3D

5AX1 \| pdb_00005ax1	Download File View File

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.80 angstrom

Furuse, M., Hosaka, T., Kimura-Someya, T., Yokoyama, S., Shirouzu, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2203-2216

Released	2015-08-26
Method	X-RAY DIFFRACTION 1.803 Å
Organisms	Acetabularia acetabulum
Macromolecule	Rhodopsin I (protein)
Unique Ligands	C14, D10, D12, OLB, R16, RET

1 to 4 of 4 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3AM6 | pdb_00003am6

Crystal structure of the proton pumping rhodopsin AR2 from marine alga Acetabularia acetabulum

5AWZ | pdb_00005awz

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.57 angstrom

5AX0 | pdb_00005ax0

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.52 angstrom

5AX1 | pdb_00005ax1

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.80 angstrom

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

3AM6 | pdb_00003am6

Crystal structure of the proton pumping rhodopsin AR2 from marine alga Acetabularia acetabulum

5AWZ | pdb_00005awz

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.57 angstrom

5AX0 | pdb_00005ax0

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.52 angstrom

5AX1 | pdb_00005ax1

Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.80 angstrom