RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

237,317
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Enterococcus faecalis"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 383 Structures.

Refinements

Structure Determination Methodology

experimental (383)

Scientific Name of Source Organism

	Enterococcus faecalis (226)
	Enterococcus faecalis V583 (129)
	Enterococcus faecalis ATCC 10100 (6)
	Enterococcus faecalis OG1RF (5)
	Escherichia coli (5)
	synthetic construct (5)
	Clostridioides difficile (3)
	Enterococcus faecalis JH1 (3)
	Enterococcus faecalis S613 (3)
	Enterococcus faecalis T2 (3)

More...

Taxonomy

	Bacteria (383)
	other sequences (6)
	Eukaryota (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (328)
	SOLUTION NMR (28)
	ELECTRON MICROSCOPY (27)

Polymer Entity Type

	Protein (377)
	RNA (24)
	DNA (17)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (29)
	1.5 - 2.0 (104)
	2.0 - 2.5 (114)
	2.5 - 3.0 (67)
	3.0 - 3.5 (27)
	3.5 - 4.0 (8)
	4.0 - 4.5 (2)
	> 4.5 (3)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (9)
	2000 - 2004 (24)
	2005 - 2009 (102)
	2010 - 2014 (100)
	2015 - 2019 (66)
	2020 - 2024 (73)
	2025 - 2029 (6)

Enzyme Classification Name

	Transferases (67)
	Hydrolases (27)
	Lyases (22)
	Isomerases (22)
	Oxidoreductases (24)
	Ligases (23)
	Translocases (1)

Membrane Protein Annotation

	OPM (4)
	PDBTM (2)
	mpstruc (1)
	MemProtMD (1)

Symmetry Type

	Asymmetric (199)
	Cyclic (169)
	Dihedral (35)

SCOP Classification

	All alpha proteins (46)
	Alpha and beta proteins (a+b) (82)
	Alpha and beta proteins (a/b) (57)
	Artifacts (57)
	All beta proteins (16)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 383 Structures

Page 1 of 16

Sort by

Explore in 3D

1B69 \| pdb_00001b69	Download File View File

THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX

Clubb, R.T., Wojciak, J.M., Connolly, K.M.

(1999) Nat Struct Biol 6: 366-373

Released	1999-09-29
Method	SOLUTION NMR
Organisms	Enterococcus faecalis synthetic construct
Macromolecule	PROTEIN (INTEGRASE) (protein) DNA (5'-D(GPAPAPTPTPTPAPCPTPAPCPTPC)-3') (nucleic acid) DNA (5'-D(GPAPGPTPAPGPTPAPAPAPTPTPC)-3') (nucleic acid)

Explore in 3D

1BB8 \| pdb_00001bb8	Download File View File

N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, 25 STRUCTURES

Clubb, R.T., Connolly, K.M., Wojciak, J.M.

(1998) Nat Struct Biol 5: 546-550

Released	1998-11-25
Method	SOLUTION NMR
Organisms	Enterococcus faecalis
Macromolecule	INTEGRASE (protein)

Explore in 3D

1E68 \| pdb_00001e68	Download File View File

Solution structure of bacteriocin AS-48

Gonzalez, C., Langdon, G., Bruix, M., Galvez, A., Valdivia, E., Maqueda, M., Rico, M.

(2000) Proc Natl Acad Sci U S A 97: 11221

Released	2000-10-25
Method	SOLUTION NMR
Organisms	Enterococcus faecalis
Macromolecule	AS-48 PROTEIN (protein)

Explore in 3D

1F8W \| pdb_00001f8w	Download File View File

CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M

Yeh, J.I., Claiborne, A., Hol, W.G.J.

(2000) Biochemistry 39: 10353-10364

Released	2001-02-05
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD

Explore in 3D

1FU0 \| pdb_00001fu0	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE PHOSPHO-SERINE 46 HPR FROM ENTEROCOCCUS FAECALIS

Audette, G.F., Engelmann, R., Hengstenberg, W., Deutscher, J., Hayakawa, K., Quail, J.W., Delbaere, L.T.J.

(2000) J Mol Biology 303: 545-553

Released	2000-11-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterococcus faecalis
Macromolecule	PHOSPHOCARRIER PROTEIN HPR (protein)

Explore in 3D

1J7I \| pdb_00001j7i	Download File View File

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa Apoenzyme

Burk, D.L., Hon, W.C., Leung, A.K.-W., Berghuis, A.M.

(2001) Biochemistry 40: 8756-8764

Released	2001-08-08
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Enterococcus faecalis
Macromolecule	AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE (protein)

Explore in 3D

1J7L \| pdb_00001j7l	Download File View File

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Complex

Burk, D.L., Hon, W.C., Leung, A.K.-W., Berghuis, A.M.

(2001) Biochemistry 40: 8756-8764

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterococcus faecalis
Macromolecule	AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE (protein)
Unique Ligands	ADP, MG

Explore in 3D

1J7U \| pdb_00001j7u	Download File View File

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa AMPPNP Complex

Burk, D.L., Hon, W.C., Leung, A.K.-W., Berghuis, A.M.

(2001) Biochemistry 40: 8756-8764

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterococcus faecalis
Macromolecule	AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE (protein)
Unique Ligands	ANP, MG

Explore in 3D

1JOA \| pdb_00001joa	Download File View File

NADH PEROXIDASE WITH CYSTEINE-SULFENIC ACID

Yeh, J.I., Claiborne, A.C., Hol, W.G.J.

(1996) Biochemistry 35: 9951-9957

Released	1997-01-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD

Explore in 3D

1L8T \| pdb_00001l8t	Download File View File

Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Kanamycin A Complex

Fong, D.H., Berghuis, A.M.

(2002) EMBO J 21: 2323-2331

Released	2002-06-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterococcus faecalis
Macromolecule	Aminoglycoside 3'-Phosphotransferase (protein)
Unique Ligands	ADP, KAN, MG

Explore in 3D

1LJ9 \| pdb_00001lj9	Download File View File

The crystal structure of the transcriptional regulator SlyA

Wu, R.Y., Zhang, R.G., Gornicki, P., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2003) J Biological Chem 278: 20240-20244

Released	2003-01-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Enterococcus faecalis
Macromolecule	transcriptional regulator SlyA (protein)

Explore in 3D

1NHP \| pdb_00001nhp	Download File View File

CRYSTALLOGRAPHIC ANALYSES OF NADH PEROXIDASE CYS42ALA AND CYS42SER MUTANTS: ACTIVE SITE STRUCTURE, MECHANISTIC IMPLICATIONS, AND AN UNUSUAL ENVIRONMENT OF ARG303

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 6985-6992

Released	1995-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

Explore in 3D

1NHQ \| pdb_00001nhq	Download File View File

CRYSTALLOGRAPHIC ANALYSES OF NADH PEROXIDASE CYS42ALA AND CYS42SER MUTANTS: ACTIVE SITE STRUCTURE, MECHANISTIC IMPLICATIONS, AND AN UNUSUAL ENVIRONMENT OF ARG303

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 6985-6992

Released	1995-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

Explore in 3D

1NHR \| pdb_00001nhr	Download File View File

AN L40C MUTATION CONVERTS THE CYSTEINE-SULFENIC ACID REDOX CENTRE IN ENTEROCOCCAL NADH PEROXIDASE TO A DISULFIDE

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 5180-5190

Released	1995-02-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

Explore in 3D

1NHS \| pdb_00001nhs	Download File View File

AN L40C MUTATION CONVERTS THE CYSTEINE-SULFENIC ACID REDOX CENTRE IN ENTEROCOCCAL NADH PEROXIDASE TO A DISULFIDE

Mande, S.S., Claiborne, A., Hol, W.G.J.

(1995) Biochemistry 34: 5180-5190

Released	1995-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD, SO4

Explore in 3D

1NPX \| pdb_00001npx	Download File View File

STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS 10C1 REFINED AT 2.16 ANGSTROMS RESOLUTION

Stehle, T., Ahmed, S.A., Claiborne, A., Schulz, G.E.

(1991) J Mol Biology 221: 1325-1344

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Enterococcus faecalis
Macromolecule	NADH PEROXIDASE (protein)
Unique Ligands	FAD

Explore in 3D

1O82 \| pdb_00001o82	Download File View File

X-RAY STRUCTURE OF BACTERIOCIN AS-48 AT PH 4.5. SULPHATE BOUND FORM

Sanchez-Barrena, M.J., Martinez-Ripoll, M., Galvez, A., Martinez-Bueno, M., Maqueda, M., Cruz, V., Albert, A.

(2003) J Mol Biology 334: 541

Released	2003-11-20
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Enterococcus faecalis
Macromolecule	PEPTIDE ANTIBIOTIC AS-48 (protein)
Unique Ligands	GOL, SO4

Explore in 3D

1O83 \| pdb_00001o83	Download File View File

Crystal Structure of Bacteriocin AS-48 at pH 7.5, phosphate bound. Crystal form I

Sanchez-Barrena, M.J., Martinez-Ripoll, M., Galvez, A., Valdivia, E., Maqueda, M., Cruz, V., Albert, A.

(2003) J Mol Biology 334: 541

Released	2003-11-20
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Enterococcus faecalis
Macromolecule	PEPTIDE ANTIBIOTIC AS-48 (protein)
Unique Ligands	GOL, PO4

Explore in 3D

1O84 \| pdb_00001o84	Download File View File

Crystal Structure of Bacteriocin AS-48. N-decyl-beta-D-maltoside Bound.

Sanchez-Barrena, M.J., Martinez-Ripoll, M., Galvez, A., Valdivia, E., Maqueda, M., Cruz, V., Albert, A.

(2003) J Mol Biology 334: 541

Released	2003-11-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecalis
Macromolecule	PEPTIDE ANTIBIOTIC AS-48 (protein)
Unique Ligands	D10, GOL, SO4
Unique branched monosaccharides	GLC