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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Halobacterium salinarum NRC-1"

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Search Summary

This query matches 3,486 Structures.

Refinements

Structure Determination Methodology

experimental (3,486)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (1,733)
	Mycobacterium tuberculosis (1,530)
	Mycobacterium tuberculosis CDC1551 (104)
	Mycobacterium tuberculosis H37Ra (80)
	synthetic construct (53)
	Mycobacterium tuberculosis variant bovis AF2122/97 (20)
	Homo sapiens (14)
	Escherichia coli (12)
	Mycobacterium tuberculosis variant bovis (11)
	Mycobacterium tuberculosis str. Erdman = ATCC 35801 (10)

More...

Taxonomy

	Bacteria (3,486)
	other sequences (53)
	Eukaryota (23)
	Archaea (2)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (3,212)
	ELECTRON MICROSCOPY (202)
	SOLUTION NMR (71)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (3,484)
	DNA (108)
	RNA (64)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (214)
	1.5 - 2.0 (1,136)
	2.0 - 2.5 (1,127)
	2.5 - 3.0 (610)
	3.0 - 3.5 (205)
	3.5 - 4.0 (73)
	4.0 - 4.5 (26)
	> 4.5 (17)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (13)
	2000 - 2004 (193)
	2005 - 2009 (564)
	2010 - 2014 (793)
	2015 - 2019 (983)
	2020 - 2024 (898)
	2025 - 2029 (41)

Enzyme Classification Name

	Transferases (1,135)
	Oxidoreductases (607)
	Hydrolases (527)
	Lyases (260)
	Ligases (205)
	Isomerases (135)
	Translocases (23)

Membrane Protein Annotation

	PDBTM (53)
	MemProtMD (30)
	OPM (35)
	mpstruc (27)

Symmetry Type

	Asymmetric (1,514)
	Cyclic (1,555)
	Dihedral (552)
	Tetrahedral (31)
	Octahedral (20)
	Helical (5)
	Icosahedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (942)
	Alpha and beta proteins (a+b) (261)
	All alpha proteins (307)
	Artifacts (234)
	All beta proteins (154)
	Multi-domain proteins (alpha and beta) (17)
	Small proteins (1)
	Membrane and cell surface proteins and peptides (1)
	Peptides (3)

AllSelected

1 to 25 of 3,486 Structures

Page 1 of 140

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1B1B \| pdb_00001b1b	Download File View File

IRON DEPENDENT REGULATOR

Pohl, E., Holmes, R.K., Hol, W.G.

(1999) J Mol Biology 285: 1145-1156

Released	1999-12-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PROTEIN (IRON DEPENDENT REGULATOR) (protein)
Unique Ligands	SO4, ZN

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1BVR \| pdb_00001bvr	Download File View File

M.TB. ENOYL-ACP REDUCTASE (INHA) IN COMPLEX WITH NAD+ AND C16-FATTY-ACYL-SUBSTRATE

Rozwarski, D.A., Vilcheze, C., Sugantino, M., Bittman, R., Jacobs, W., TB Structural Genomics Consortium (TBSGC)

(1999) J Biological Chem 274: 15582-15589

Released	1999-09-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PROTEIN (ENOYL-ACYL CARRIER PROTEIN (ACP) REDUCTASE) (protein)
Unique Ligands	NAD, THT

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1C3V \| pdb_00001c3v	Download File View File

DIHYDRODIPICOLINATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND PDC

Cirilli, M., Zheng, R., Scapin, G., Blanchard, J.S., TB Structural Genomics Consortium (TBSGC)

(2003) Biochemistry 42: 10644-10650

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	DIHYDRODIPICOLINATE REDUCTASE (protein)
Unique Ligands	NDP, PDC, PG4

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1DF7 \| pdb_00001df7	Download File View File

DIHYDROFOLATE REDUCTASE OF MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND METHOTREXATE

Li, R., Sirawaraporn, R., Chitnumsub, P., Sirawaraporn, W., Wooden, J., Athappilly, F., Turley, S., Hol, W.G.

(2000) J Mol Biology 295: 307-323

Released	2000-03-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	GOL, MTX, NDP, SO4

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1DG5 \| pdb_00001dg5	Download File View File

DIHYDROFOLATE REDUCTASE OF MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND TRIMETHOPRIM

Li, R., Sirawaraporn, R., Chitnumsub, P., Sirawaraporn, W., Wooden, J., Athappilly, F., Turley, S., Hol, W.G.

(2000) J Mol Biology 295: 307-323

Released	2000-03-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	GOL, NDP, TOP

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1DG7 \| pdb_00001dg7	Download File View File

DIHYDROFOLATE REDUCTASE OF MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND 4-BROMO WR99210

Li, R., Sirawaraporn, R., Chitnumsub, P., Sirawaraporn, W., Wooden, J., Athappilly, F., Turley, S., Hol, W.G.

(2000) J Mol Biology 295: 307-323

Released	2000-03-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	GOL, NDP, WRB

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1DG8 \| pdb_00001dg8	Download File View File

DIHYDROFOLATE REDUCTASE OF MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH

Li, R., Sirawaraporn, R., Chitnumsub, P., Sirawaraporn, W., Wooden, J., Athappilly, F., Turley, S., Hol, W.G.

(2000) J Mol Biology 295: 307-323

Released	2000-03-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	GOL, NDP

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1DQY \| pdb_00001dqy	Download File View File

CRYSTAL STRUCTURE OF ANTIGEN 85C FROM MYCOBACTERIUM TUBERCULOSIS WITH DIETHYL PHOSPHATE INHIBITOR

Ronning, D.R., Klabunde, T., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 141-146

Released	2000-07-12
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PROTEIN (ANTIGEN 85-C) (protein)
Unique Ligands	DEP, MRD

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1DQZ \| pdb_00001dqz	Download File View File

CRYSTAL STRUCTURE OF ANTIGEN 85C FROM MYCOBACTERIUM TUBERCULOSIS

Ronning, D.R., Klabunde, T., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 141-146

Released	2000-07-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PROTEIN (ANTIGEN 85-C) (protein)

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1E9X \| pdb_00001e9x	Download File View File

Cytochrome P450 14 alpha-sterol demethylase (CYP51) from Mycobacterium tuberculosis in complex with 4-phenylimidazole

Podust, L.M., Poulos, T.L., Waterman, M.R.

(2001) Proc Natl Acad Sci U S A 98: 3068

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	CYTOCHROME P450 51-LIKE RV0764C (protein)
Unique Ligands	HEM, PIM

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1EA1 \| pdb_00001ea1	Download File View File

Cytochrome P450 14 alpha-sterol demethylase (CYP51) from Mycobacterium tuberculosis in complex with fluconazole

Podust, L.M., Poulos, T.L., Waterman, M.R.

(2001) Proc Natl Acad Sci U S A 98: 3068

Released	2000-11-06
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	CYTOCHROME P450 51-LIKE RV0764C (protein)
Unique Ligands	HEM, TPF

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1ENY \| pdb_00001eny	Download File View File

CRYSTAL STRUCTURE AND FUNCTION OF THE ISONIAZID TARGET OF MYCOBACTERIUM TUBERCULOSIS

Dessen, A., Quemard, A., Blanchard, J.S., Jacobs Jr., W.R., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(1995) Science 267: 1638-1641

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	ENOYL-ACYL CARRIER PROTEIN (ACP) REDUCTASE (protein)
Unique Ligands	NAD

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1ENZ \| pdb_00001enz	Download File View File

CRYSTAL STRUCTURE AND FUNCTION OF THE ISONIAZID TARGET OF MYCOBACTERIUM TUBERCULOSIS

Dessen, A., Quemard, A., Blanchard, J.S., Jacobs Jr., W.R., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(1995) Science 267: 1638-1641

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	ENOYL-ACYL CARRIER PROTEIN (ACP) REDUCTASE (protein)
Unique Ligands	NAD

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1EYE \| pdb_00001eye	Download File View File

1.7 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTEROATE SYNTHASE (DHPS) FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH 6-HYDROXYMETHYLPTERIN MONOPHOSPHATE

Baca, A.M., Sirawaraporn, R., Turley, S., Sirawaraporn, W., Hol, W.G.J.

(2000) J Mol Biology 302: 1193-1212

Released	2000-10-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DIHYDROPTEROATE SYNTHASE I (protein)
Unique Ligands	MG, PMM

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1EYV \| pdb_00001eyv	Download File View File

THE CRYSTAL STRUCTURE OF NUSB FROM MYCOBACTERIUM TUBERCULOSIS

Gopal, B., Haire, L.F., Cox, R.A., Colston, M.J., Major, S., Brannigan, J.A., Smerdon, S.J., Dodson, G.G., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 475-478

Released	2000-05-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	N-UTILIZING SUBSTANCE PROTEIN B HOMOLOG (protein)
Unique Ligands	PO4

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1F0N \| pdb_00001f0n	Download File View File

MYCOBACTERIUM TUBERCULOSIS ANTIGEN 85B

Anderson, D.H., Harth, G., Horwitz, M.A., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2001) J Mol Biology 307: 671-681

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	ANTIGEN 85B (protein)
Unique Ligands	MES, MPD

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1F0P \| pdb_00001f0p	Download File View File

MYCOBACTERIUM TUBERCULOSIS ANTIGEN 85B WITH TREHALOSE

Anderson, D.H., Harth, G., Horwitz, M.A., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2001) J Mol Biology 307: 671-681

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	ANTIGEN 85-B (protein)
Unique Ligands	MES, MPD
Unique branched monosaccharides	GLC

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1F61 \| pdb_00001f61	Download File View File

CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM MYCOBACTERIUM TUBERCULOSIS

Sharma, V., Sharma, S., Hoener zu Bentrup, K.H., McKinney, J.D., Russell, D.G., Jacobs Jr., W.R., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 663-668

Released	2000-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ISOCITRATE LYASE (protein)
Unique Ligands	MG

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1F8I \| pdb_00001f8i	Download File View File

CRYSTAL STRUCTURE OF ISOCITRATE LYASE:NITROPROPIONATE:GLYOXYLATE COMPLEX FROM MYCOBACTERIUM TUBERCULOSIS

Sharma, V., Sharma, S., Hoener zu Bentrup, K., McKinney, J.D., Russell, D.G., Jacobs Jr., W.R., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 663-668

Released	2000-12-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ISOCITRATE LYASE (protein)
Unique Ligands	GLV, MG, SIN

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1F8M \| pdb_00001f8m	Download File View File

CRYSTAL STRUCTURE OF 3-BROMOPYRUVATE MODIFIED ISOCITRATE LYASE (ICL) FROM MYCOBACTERIUM TUBERCULOSIS

Sharma, V., Sharma, S., Hoener zu Bentrup, K., McKinney, J.D., Russell, D.G., Jacobs Jr., W.R., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 663-668

Released	2000-12-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ISOCITRATE LYASE (protein)
Unique Ligands	MG, PYR

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1FX7 \| pdb_00001fx7	Download File View File

CRYSTAL STRUCTURE OF THE IRON-DEPENDENT REGULATOR (IDER) FROM MYCOBACTERIUM TUBERCULOSIS

Feese, M.D., Ingason, B.P., Goranson-Siekierke, J., Holmes, R.K., Hol, W.J.G.

(2001) J Biological Chem 276: 5959-5966

Released	2001-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	IRON-DEPENDENT REPRESSOR IDER (protein)
Unique Ligands	CO, SO4

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1G18 \| pdb_00001g18	Download File View File

RECA-ADP-ALF4 COMPLEX

Datta, S., Prabu, M.M., Vaze, M.B., Ganesh, N., Chandra, N.R., Muniyappa, K., Vijayan, M., TB Structural Genomics Consortium (TBSGC)

(2000) Nucleic Acids Res 28: 4964-4973

Released	2000-12-11
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	RECA PROTEIN (protein)
Unique Ligands	ADP, ALF

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1G19 \| pdb_00001g19	Download File View File

STRUCTURE OF RECA PROTEIN

Datta, S., Prabu, M.M., Vaze, M.B., Ganesh, N., Chandra, N.R., Muniyappa, K., Vijayan, M., TB Structural Genomics Consortium (TBSGC)

(2000) Nucleic Acids Res 28: 4964-4973

Released	2000-12-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	RECA PROTEIN (protein)
Unique Ligands	PO4

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1G2O \| pdb_00001g2o	Download File View File

CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH A TRANSITION-STATE INHIBITOR

Shi, W., Basso, L.A., Tyler, P.C., Furneaux, R.H., Blanchard, J.S., Almo, S.C., Schramm, V.L.

(2001) Biochemistry 40: 8204-8215

Released	2001-08-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	IMH, PO4

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1G3U \| pdb_00001g3u	Download File View File

CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE MONOPHOSPHATE (TMP)

Li de la Sierra, I., Munier-Lehmann, H., Gilles, A.M., Barzu, O., Delarue, M.

(2001) J Mol Biology 311: 87-100

Released	2001-10-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	MG, SO4, TMP

1 to 25 of 3,486 Structures

Page 1 of 140

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B1B | pdb_00001b1b

1BVR | pdb_00001bvr

1C3V | pdb_00001c3v

1DF7 | pdb_00001df7

1DG5 | pdb_00001dg5

1DG7 | pdb_00001dg7

1DG8 | pdb_00001dg8

1DQY | pdb_00001dqy

1DQZ | pdb_00001dqz

1E9X | pdb_00001e9x

1EA1 | pdb_00001ea1

1ENY | pdb_00001eny

1ENZ | pdb_00001enz

1EYE | pdb_00001eye

1EYV | pdb_00001eyv

1F0N | pdb_00001f0n

1F0P | pdb_00001f0p

1F61 | pdb_00001f61

1F8I | pdb_00001f8i

1F8M | pdb_00001f8m

1FX7 | pdb_00001fx7

1G18 | pdb_00001g18

1G19 | pdb_00001g19

1G2O | pdb_00001g2o

1G3U | pdb_00001g3u