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237,317
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Methanococcus voltae"

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Methanococcus voltae (16)
	Methanococcus voltae A3 (10)
	Methanococcus voltae PS (1)

Taxonomy

Archaea (27)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (14)
	2.5 - 3.0 (9)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (10)
	2010 - 2014 (2)
	2015 - 2019 (1)
	2020 - 2024 (11)

Enzyme Classification Name

Transferases (1)

Symmetry Type

	Cyclic (14)
	Asymmetric (12)
	Dihedral (3)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (16)
	Artifacts (2)
	All alpha proteins (12)

AllSelected

1 to 25 of 27 Structures

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1KHT \| pdb_00001kht	Download File View File

Adenylate kinase from Methanococcus voltae

Criswell, A.R., Konisky, J., Phillips Jr., G.N.

(2003) J Mol Biology 330: 1087-1099

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanococcus voltae
Macromolecule	adenylate kinase (protein)
Unique Ligands	AMP

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1T4G \| pdb_00001t4g	Download File View File

ATPase in complex with AMP-PNP

Wu, Y., He, Y., Moya, I.A., Qian, X., Luo, Y.

(2004) Mol Cell 15: 423-435

Released	2004-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, MG

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1XU4 \| pdb_00001xu4	Download File View File

ATPASE IN COMPLEX WITH AMP-PNP, MAGNESIUM AND POTASSIUM CO-F

Wu, Y., Qian, X., He, Y., Moya, I.A., Luo, Y.

(2005) J Biological Chem 280: 722-728

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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2B21 \| pdb_00002b21	Download File View File

RADA Recombinase in complex with AMPPNP at pH 6.0

Qian, X., He, Y., Wu, Y., Luo, Y.

To be published

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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2F1H \| pdb_00002f1h	Download File View File

RECOMBINASE IN COMPLEX WITH AMP-PNP and Potassium

Qian, X., He, Y., Wu, Y., Luo, Y.

(2006) J Mol Biology 360: 537-547

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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2F1I \| pdb_00002f1i	Download File View File

Recombinase in Complex with AMP-PNP

Qian, X., He, Y., Wu, Y., Luo, Y.

(2006) J Mol Biology 360: 537-547

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, MG

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2F1J \| pdb_00002f1j	Download File View File

Recombinase in Complex with ADP

Qian, X., He, Y., Wu, Y., Luo, Y.

(2006) J Mol Biology 360: 537-547

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ADP, MG

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2FPK \| pdb_00002fpk	Download File View File

RadA recombinase in complex with ADP

Wu, Y., Qian, X., He, Y., Moya, I.A., Luo, Y.

(2005) Biochemistry 44: 13753-13761

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ADP, K, MG

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2FPL \| pdb_00002fpl	Download File View File

RadA recombinase in complex with AMP-PNP and low concentration of K+

Wu, Y., Qian, X., He, Y., Moya, I.A., Luo, Y.

(2005) Biochemistry 44: 13753-13761

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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2FPM \| pdb_00002fpm	Download File View File

RadA recombinase in complex with AMP-PNP and high concentration of K+

Wu, Y., Qian, X., He, Y., Moya, I.A., Luo, Y.

(2005) Biochemistry 44: 13753-13761

Released	2006-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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2GDJ \| pdb_00002gdj	Download File View File

Delta-62 RADA recombinase in complex with AMP-PNP and magnesium

Wu, Y., Qian, X., He, Y., Luo, Y.

(2006) Structure 14: 983-992

Released	2006-05-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, MG

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2I1Q \| pdb_00002i1q	Download File View File

RadA Recombinase in complex with Calcium

Qian, X., He, Y., Ma, X., Fodje, M.N., Grochulski, P., Luo, Y.

(2006) J Biological Chem 281: 39380-39387

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, CA, MG, NA

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3FYH \| pdb_00003fyh	Download File View File

Recombinase in complex with ADP and metatungstate

Li, Y., He, Y., Luo, Y.

(2009) Biochemistry 48: 6805-6810

Released	2009-09-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ADP, MG, NA, W

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3NTU \| pdb_00003ntu	Download File View File

RADA RECOMBINASE D302K MUTANT IN COMPLEX with AMP-PNP

Luo, Y.

(2012) J Biological Chem 287: 8724-8736

Released	2011-07-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanococcus voltae PS
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, MG, NA

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4DC9 \| pdb_00004dc9	Download File View File

Hexameric ring of Methanococcus voltae RadA

Du, L., Luo, Y.

(2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68: 511-516

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	NO3

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4QKQ \| pdb_00004qkq	Download File View File

RadA from Methanococcus Voltae in complex with copper phthalocyanine tetrasulfonate inhibitor

Rao, D.E.C.S., Li, Y., He, Y., Luo, Y.

To be published

Released	2015-06-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein RadA (protein)
Unique Ligands	35N, NO3

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7BSB \| pdb_00007bsb	Download File View File

Mevo lectin- Native form-2

Sivaji, N., Suguna, K., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 315-328

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	EDO, GOL

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7BSM \| pdb_00007bsm	Download File View File

Mevo lectin complex with 2alpha-mannobiose

Sivaji, N., Suguna, K., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 315-328

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	ALA, MAN
Unique branched monosaccharides	MAN

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7BSN \| pdb_00007bsn	Download File View File

Mevo lectin complex with 3alpha-mannobiose

Sivaji, N., Suguna, K., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 315-328

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	MAN
Unique branched monosaccharides	MAN

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7BT8 \| pdb_00007bt8	Download File View File

Mevo lectin complex with mannotriose

Sivaji, N., Suguna, K., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 315-328

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	EDO, GOL
Unique branched monosaccharides	BMA, MAN

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7BT9 \| pdb_00007bt9	Download File View File

Mevo lectin complex with alpha-mannose

Sivaji, N., Suguna, K., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 315-328

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	MAN

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7BTH \| pdb_00007bth	Download File View File

Mevo lectin- Native form-1

Sivaji, N., Suguna, K., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 315-328

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	GOL

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7BTL \| pdb_00007btl	Download File View File

Mevo lectin complex with mannopentose

Sivaji, N., Suguna, K., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 315-328

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	GOL, MAN
Unique branched monosaccharides	MAN

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7DED \| pdb_00007ded	Download File View File

Mevo lectin complex with mannoheptose (Man7)

Sivaji, N., Surolia, A., Vijayan, M.

(2021) Glycobiology 31: 1046-1059

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.228 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	EDO, MAN
Unique branched monosaccharides	MAN

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7W62 \| pdb_00007w62	Download File View File

Mevo lectin complex with mannotetraose (Man4)

Sivaji, N., Vijayan, M.

To be published

Released	2023-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanococcus voltae A3
Macromolecule	lectin (protein)
Unique Ligands	EDO
Unique branched monosaccharides	MAN

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KHT | pdb_00001kht

1T4G | pdb_00001t4g

1XU4 | pdb_00001xu4

2B21 | pdb_00002b21

2F1H | pdb_00002f1h

2F1I | pdb_00002f1i

2F1J | pdb_00002f1j

2FPK | pdb_00002fpk

2FPL | pdb_00002fpl

2FPM | pdb_00002fpm

2GDJ | pdb_00002gdj

2I1Q | pdb_00002i1q

3FYH | pdb_00003fyh

3NTU | pdb_00003ntu

4DC9 | pdb_00004dc9

4QKQ | pdb_00004qkq

7BSB | pdb_00007bsb

7BSM | pdb_00007bsm

7BSN | pdb_00007bsn

7BT8 | pdb_00007bt8

7BT9 | pdb_00007bt9

7BTH | pdb_00007bth

7BTL | pdb_00007btl

7DED | pdb_00007ded

7W62 | pdb_00007w62