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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Norwalk virus"

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Search Summary

This query matches 283 Structures.

Refinements

Structure Determination Methodology

experimental (283)

Scientific Name of Source Organism

	Norwalk virus (43)
	Murine norovirus 1 (41)
	Norovirus Hu/1968/US (37)
	Southampton virus (serotype 3) (22)
	Vicugna pacos (16)
	Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU (15)
	Norovirus GII (11)
	Homo sapiens (9)
	Mus musculus (9)
	Norovirus GII.10 (9)

More...

Taxonomy

	Riboviria (283)
	Eukaryota (36)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (258)
	ELECTRON MICROSCOPY (20)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (283)
	RNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (47)
	1.5 - 2.0 (118)
	2.0 - 2.5 (65)
	2.5 - 3.0 (25)
	3.0 - 3.5 (18)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (15)
	2010 - 2014 (79)
	2015 - 2019 (112)
	2020 - 2024 (67)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (53)
	Transferases (40)

Symmetry Type

	Cyclic (193)
	Asymmetric (87)
	Icosahedral (14)
	Dihedral (8)

SCOP Classification

	All beta proteins (188)
	Artifacts (75)
	Multi-domain proteins (alpha and beta) (20)

AllSelected

1 to 25 of 283 Structures

Page 1 of 12

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1IHM \| pdb_00001ihm	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF NORWALK VIRUS CAPSID

Prasad, B.V., Hardy, M.E., Dokland, T., Bella, J., Rossmann, M.G., Estes, M.K.

(1999) Science 286: 287-290

Released	2001-05-16
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Norwalk virus
Macromolecule	capsid protein (protein)

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1SH0 \| pdb_00001sh0	Download File View File

Crystal Structure of Norwalk Virus Polymerase (Triclinic)

Ng, K.K., Pendas-Franco, N., Rojo, J., Boga, J.A., Machin, A., Alonso, J.M., Parra, F.

(2004) J Biological Chem 279: 16638-16645

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Norwalk virus
Macromolecule	RNA Polymerase (protein)

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1SH2 \| pdb_00001sh2	Download File View File

Crystal Structure of Norwalk Virus Polymerase (Metal-free, Centered Orthorhombic)

Ng, K.K., Pendas-Franco, N., Rojo, J., Boga, J.A., Machin, A., Alonso, J.M., Parra, F.

(2004) J Biological Chem 279: 16638-16645

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Norwalk virus
Macromolecule	RNA Polymerase (protein)

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1SH3 \| pdb_00001sh3	Download File View File

Crystal Structure of Norwalk Virus Polymerase (MgSO4 crystal form)

Ng, K.K., Pendas-Franco, N., Rojo, J., Boga, J.A., Machin, A., Alonso, J.M., Parra, F.

(2004) J Biological Chem 279: 16638-16645

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Norwalk virus
Macromolecule	RNA Polymerase (protein)
Unique Ligands	MG

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1WQS \| pdb_00001wqs	Download File View File

Crystal structure of Norovirus 3C-like protease

Nakamura, K., Someya, Y., Kumasaka, T., Tanaka, N.

(2005) J Virol 79: 13685-13693

Released	2005-10-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Chiba virus
Macromolecule	3C-like protease (protein)
Unique Ligands	HG, TAR, TLA

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2FYQ \| pdb_00002fyq	Download File View File

Crystal Structure of the Norwalk Virus Protease

Zeitler, C.E., Estes, M.K., Venkataram Prasad, B.V.

(2006) J Virol 80: 5050-5058

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Norwalk virus
Macromolecule	Chymotrypsin-like cysteine proteinase (protein)
Unique Ligands	CL, PO4

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2FYR \| pdb_00002fyr	Download File View File

Crystal Structure of Norwalk Virus Protease grown in the presence of AEBSF

Zeitler, C.E., Estes, M.K., Venkataram Prasad, B.V.

(2006) J Virol 80: 5050-5058

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Norwalk virus
Macromolecule	Chymotrypsin-like cysteine proteinase (protein)
Unique Ligands	CL, MG

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2IPH \| pdb_00002iph	Download File View File

X-ray Structure at 1.75 A Resolution of a Norovirus Protease Linked to an Active Site Directed Peptide Inhibitor

Hussey, R.J.

(2011) Biochemistry 50: 240-249

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Southampton virus (serotype 3)
Macromolecule	Thiol protease P3C (protein)
Unique Ligands	LGG

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2LNC \| pdb_00002lnc	Download File View File

Solution NMR structure of Norwalk virus protease

Takahashi, D., Hiromasa, Y., Kim, Y., Anbanandam, A., Chang, K., Prakash, O.

(2013) Protein Sci 22: 347-357

Released	2012-12-26
Method	SOLUTION NMR
Organisms	Norovirus Hu/1968/US
Macromolecule	3C-like protease (protein)

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2M4G \| pdb_00002m4g	Download File View File

Solution structure of the Core Domain (11-85) of the Murine Norovirus VPg protein

Leen, E.N., Kwok, R., Birtley, J.R., Prater, S.N., Simpson, P.J., Matthews, S., Marchant, J., Curry, S.

(2013) J Virol 87: 5318-5330

Released	2013-03-27
Method	SOLUTION NMR
Organisms	Murine norovirus 1
Macromolecule	Murine Norovirus VPg protein (protein)

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2MCD \| pdb_00002mcd	Download File View File

Backbone 1H, 13C, and 15N Chemical Shift Assignments for murine norovirus NS1/2 D94E mutant

Borin, B., Krezel, A.M.

(2014) Proteins 82: 1200-1209

Released	2013-12-18
Method	SOLUTION NMR
Organisms	Murine norovirus 1
Macromolecule	Murine norovirus 1 (protein)

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2MCH \| pdb_00002mch	Download File View File

Backbone 1H, 13C, and 15N Chemical Shift Assignments for murine norovirus NS1/2 CW3 WT

Borin, B., Krezel, A.M.

(2014) Proteins 82: 1200-1209

Released	2013-12-18
Method	SOLUTION NMR
Organisms	Murine norovirus 1
Macromolecule	Murine norovirus 1 (protein)

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2MCK \| pdb_00002mck	Download File View File

Backbone 1H, 13C, and 15N Chemical Shift Assignments for murine norovirus CR6 NS1/2 protein

Borin, B., Krezel, A.M.

(2014) Proteins 82: 1200-1209

Released	2013-12-18
Method	SOLUTION NMR
Organisms	Murine norovirus GV/CR6/2005/USA
Macromolecule	Polyprotein (protein)

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2ZL5 \| pdb_00002zl5	Download File View File

Atomic resolution structural characterization of recognition of histo-blood group antigen by Norwalk virus

Choi, J.M., Huston, A.M., Estes, M.K., Prasad, B.V.V.

(2008) Proc Natl Acad Sci U S A 105: 9175-9180

Released	2008-07-22
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Norwalk virus
Macromolecule	58 kd capsid protein (protein)
Unique Ligands	ACT, CA, MG

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2ZL6 \| pdb_00002zl6	Download File View File

Atomic resolution structural characterization of recognition of histo-blood group antigens by Norwalk virus

Choi, J.M., Huston, A.M., Estes, M.K., Prasad, B.V.V.

(2008) Proc Natl Acad Sci U S A 105: 9175-9180

Released	2008-07-22
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Norwalk virus
Macromolecule	58 kd capsid protein (protein)
Unique Ligands	ACT, MG
Unique branched monosaccharides	BGC, FUC, GAL, NAG

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2ZL7 \| pdb_00002zl7	Download File View File

Atomic resolution structural characterization of recognition of histo-blood group antigens by Norwalk virus

Choi, J.M., Huston, A.M., Estes, M.K., Prasad, B.V.V.

(2008) Proc Natl Acad Sci U S A 105: 9175-9180

Released	2008-07-22
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Norwalk virus
Macromolecule	58 kd capsid protein (protein)
Unique Ligands	ACT, CA, MG
Unique branched monosaccharides	FUC, GAL, NGA

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3ASP \| pdb_00003asp	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA
Unique branched monosaccharides	A2G, FUC, GAL, NAG

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3ASQ \| pdb_00003asq	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with H-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASR \| pdb_00003asr	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-a

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASS \| pdb_00003ass	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3AST \| pdb_00003ast	Download File View File

Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3BQJ \| pdb_00003bqj	Download File View File

VA387 polypeptide

Bu, W., Mamedova, A., Tan, M., Jiang, J., Hegde, R.

(2008) J Virol 82: 5340-5347

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Norovirus isolates
Macromolecule	va387 polypeptide (protein)

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3BSN \| pdb_00003bsn	Download File View File

Norwalk Virus polymerase bound to 5-nitrocytidine triphosphate and primer-template RNA

Zamyatkin, D.F., Ng, K.K.S.

(2008) J Biological Chem 283: 7705-7712

Released	2008-01-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Norwalk virus
Macromolecule	RNA dependent RNA polymerase (protein) RNA (5'-R(UPGPCPCPCPGPGPG)-3') (nucleic acid) RNA (5'-R(UPGPCPCPCPGPGPGP*(N5M))-3') (nucleic acid)
Unique Ligands	GOL, MN, N5C

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3BSO \| pdb_00003bso	Download File View File

Norwalk Virus polymerase bound to cytidine 5'-triphosphate and primer-template RNA

Zamyatkin, D.F., Ng, K.K.S.

(2008) J Biological Chem 283: 7705-7712

Released	2008-01-08
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Norwalk virus
Macromolecule	RNA dependent RNA polymerase (protein) RNA (5'-R(UPGPCPCPCPGPGPG)-3') (nucleic acid) RNA (5'-R(PUPGPCPCPCPGPGPGP*C)-3') (nucleic acid)
Unique Ligands	CTP, GOL, MN