RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Paramagnetospirillum magnetotacticum"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Paramagnetospirillum magnetotacticum (20)
	Paramagnetospirillum magnetotacticum MS-1 (4)

Taxonomy

Bacteria (24)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (5)
	2.5 - 3.0 (7)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (12)
	2020 - 2024 (6)

Membrane Protein Annotation

	MemProtMD (20)
	PDBTM (20)
	mpstruc (20)
	OPM (8)

Symmetry Type

	Cyclic (21)
	Asymmetric (3)

SCOP Classification

	All beta proteins (11)
	Artifacts (11)
	Membrane and cell surface proteins and peptides (11)
	All alpha proteins (1)

AllSelected

1 to 24 of 24 Structures

Page 1 of 1

Sort by

Explore in 3D

1XL4	Download File View File

Intermediate gating structure 1 of the inwardly rectifying K+ channel KirBac3.1

Gulbis, J.M., Kuo, A., Smith, B., Doyle, D.A., Edwards, A., Arrowsmith, C., Sundstrom, M.

To be published

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel (protein)
Unique Ligands	K, MG

Explore in 3D

1XL6	Download File View File

Intermediate gating structure 2 of the inwardly rectifying K+ channel KirBac3.1

Gulbis, J.M., Kuo, A., Smith, B., Doyle, D.A., Edwards, A., Arrowsmith, C., Sundstrom, M.

To be published

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel (protein)
Unique Ligands	K, MG, SPM

Explore in 3D

2OH3	Download File View File

Crystal structure of COG1633: Uncharacterized conserved protein (ZP_00055496.1) from Magnetospirillum magnetotacticum MS-1 at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-01-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Paramagnetospirillum magnetotacticum MS-1
Macromolecule	COG1633: Uncharacterized conserved protein (protein)
Unique Ligands	IMD, PGE, ZN

Explore in 3D

2RKH	Download File View File

Crystal structure of a putative AphA-like transcription factor (ZP_00208345.1) from Magnetospirillum magnetotacticum MS-1 at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-10-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Paramagnetospirillum magnetotacticum MS-1
Macromolecule	Putative AphA-like transcription factor (protein)

Explore in 3D

2WLH	Download File View File

POTASSIUM CHANNEL FROM MAGNETOSPIRILLUM MAGNETOTACTICUM

Clarke, O.B., Caputo, A.T., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-09
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	POTASSIUM CHANNEL (protein)
Unique Ligands	CL, K

Explore in 3D

2WLI	Download File View File

POTASSIUM CHANNEL FROM MAGNETOSPIRILLUM MAGNETOTACTICUM

Clarke, O.B., Caputo, A.T., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-09
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	KIRBAC3.1 POTASSIUM CHANNEL (protein) POTASSIUM CHANNEL (protein)
Unique Ligands	K

Explore in 3D

2WLJ	Download File View File

Potassium channel from Magnetospirillum magnetotacticum

Clarke, O.B., Caputo, A.T., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	POTASSIUM CHANNEL (protein)
Unique Ligands	CA, CL, K, SPM

Explore in 3D

2WLK	Download File View File

STRUCTURE OF THE ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL FROM MAGNETOSPIRILLUM MAGNETOTACTICUM

Clarke, O.B., Caputo, A.T., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 10 (protein)
Unique Ligands	CL, K, SPM

Explore in 3D

2WLM	Download File View File

POTASSIUM CHANNEL FROM MAGNETOSPIRILLUM MAGNETOTACTICUM

Clarke, O.B., Caputo, A.T., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-09
Method	X-RAY DIFFRACTION 3.61 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	POTASSIUM CHANNEL (protein)
Unique Ligands	K

Explore in 3D

2WLN	Download File View File

POTASSIUM CHANNEL FROM MAGNETOSPIRILLUM MAGNETOTACTICUM

Clarke, O.B., Caputo, A.T., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-09
Method	X-RAY DIFFRACTION 3.44 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	POTASSIUM CHANNEL (protein)
Unique Ligands	K

Explore in 3D

2WLO	Download File View File

POTASSIUM CHANNEL FROM MAGNETOSPIRILLUM MAGNETOTACTICUM

Clarke, O.B., Caputo, A.T., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-23
Method	X-RAY DIFFRACTION 4.036 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	POTASSIUM CHANNEL (protein)
Unique Ligands	K

Explore in 3D

2X6A	Download File View File

Potassium Channel from Magnetospirillum Magnetotacticum

Clarke, O.B., Caputo, A.T., Hill, A.P., Vandenberg, J.I., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 10 (protein)
Unique Ligands	K, PC

Explore in 3D

2X6B	Download File View File

Potassium Channel from Magnetospirillum Magnetotacticum

Clarke, O.B., Caputo, A.T., Hill, A.P., Vandenberg, J.I., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-23
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 10 (protein)
Unique Ligands	BA, K, PC

Explore in 3D

2X6C	Download File View File

Potassium Channel from Magnetospirillum Magnetotacticum

Clarke, O.B., Caputo, A.T., Hill, A.P., Vandenberg, J.I., Smith, B.J., Gulbis, J.M.

(2010) Cell 141: 1018

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 10 (protein)
Unique Ligands	CL, K, PC, SM

Explore in 3D

3C1A	Download File View File

Crystal structure of a putative oxidoreductase (ZP_00056571.1) from Magnetospirillum magnetotacticum MS-1 at 1.85 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-02-05
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Paramagnetospirillum magnetotacticum MS-1
Macromolecule	Putative oxidoreductase (protein)
Unique Ligands	PEG, PG4, PGE

Explore in 3D

3KH1	Download File View File

Crystal structure of Predicted metal-dependent phosphohydrolase (ZP_00055740.2) from Magnetospirillum magnetotacticum MS-1 at 1.37 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2009-11-24
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Paramagnetospirillum magnetotacticum MS-1
Macromolecule	Predicted metal-dependent phosphohydrolase (protein)
Unique Ligands	ACT, CA, PG4

Explore in 3D

3ZRS	Download File View File

X-ray crystal structure of a KirBac potassium channel highlights a mechanism of channel opening at the bundle-crossing gate.

Bavro, V.N., De Zorzi, R., Schmidt, M.R., Muniz, J.R.C., Zubcevic, L., Sansom, M.S.P., Venien-Bryan, C., Tucker, S.J.

(2012) Nat Struct Mol Biol 19: 158

Released	2012-01-11
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	ATP-SENSITIVE INWARD RECTIFIER POTASSIUM CHANNEL 10 (protein)
Unique Ligands	CL, K

Explore in 3D

4LP8	Download File View File

A Novel Open-State Crystal Structure of the Prokaryotic Inward Rectifier KirBac3.1

Zubcevic, L., Bavro, V.N., Muniz, J.R.C., Schmidt, M.R., Wang, S., De Zorzi, R., Venien-Bryan, C., Sansom, M.S.P., Nichols, C.G., Tucker, S.J.

(2014) J Biological Chem 289: 143-151

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel Kirbac3.1 (protein)
Unique Ligands	CL, K, PEG

Explore in 3D

6O9T	Download File View File

KirBac3.1 mutant at a resolution of 4.1 Angstroms

Gulbis, J.M., Black, K.A., Miller, D.M.

(2020) Nat Commun 11: 3024-3024

Released	2020-05-27
Method	X-RAY DIFFRACTION 4.01 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel Kirbac3.1 (protein)
Unique Ligands	6E3, K

Explore in 3D

6O9U	Download File View File

KirBac3.1 at a resolution of 2 Angstroms

Gulbis, J.M., Clarke, O.B.

(2020) Nat Commun 11: 3024-3024

Released	2020-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel Kirbac3.1 (protein)
Unique Ligands	BA, CL, K, PCW, TMO, Z3P

Explore in 3D

6O9V	Download File View File

KirBac3.1 mutant at a resolution of 3.1 Angstroms

Gulbis, J.M., Black, K.A., Miller, D.M.

(2020) Nat Commun 11: 3024-3024

Released	2020-05-27
Method	X-RAY DIFFRACTION 3.094 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel Kirbac3.1 (protein)
Unique Ligands	DDQ, K, M1M, TMO

Explore in 3D

7ADI	Download File View File

KirBac3.1 W46R: role of a highly conserved tryptophan at the membrane-water interface of Kir channel

Venien-Bryan, C., Fagnen, C., De Zorzi, R., Bannwarth, L., Oubella, I., Haouz, A.

(2021) Int J Mol Sci 23:

Released	2022-01-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel Kirbac3.1 (protein)
Unique Ligands	K, MG

Explore in 3D

7N9K	Download File View File

KirBac3.1 L124M mutant

Black, T.A., Gulbis, J.M.

(2022) Nat Commun 13: 490-490

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel Kirbac3.1 (protein)
Unique Ligands	K, OCT, PCW, TMO

Explore in 3D

7N9L	Download File View File

KirBac3.1 C71S C262S

Gulbis, J.M., Black, K.A.

(2022) Nat Commun 13: 490-490

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Paramagnetospirillum magnetotacticum
Macromolecule	Inward rectifier potassium channel Kirbac3.1 (protein)
Unique Ligands	K, PCW, TMO