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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Streptococcus gordonii"

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Streptococcus gordonii (27)
	Streptococcus gordonii str. Challis (8)
	Streptococcus gordonii str. Challis substr. CH1 (8)

Taxonomy

Bacteria (43)

Experimental Method

	X-RAY DIFFRACTION (41)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (10)
	1.5 - 2.0 (12)
	2.0 - 2.5 (7)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (9)
	2010 - 2014 (6)
	2015 - 2019 (8)
	2020 - 2024 (18)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (2)

Symmetry Type

	Asymmetric (30)
	Cyclic (16)

SCOP Classification

Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 43 Structures

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1K20 \| pdb_00001k20	Download File View File

Inorganic Pyrophosphatase (family II) from Streptococcus gordonii at 1.5 A resolution

Ahn, S., Milner, A.J., Futterer, K., Konopka, M., Ilias, M., Young, T.W., White, S.A.

(2001) J Mol Biology 313: 797-811

Released	2001-10-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus gordonii
Macromolecule	Manganese-dependent inorganic pyrophosphatase (protein)
Unique Ligands	GOL, MN, SO4

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1WPP \| pdb_00001wpp	Download File View File

Structure of Streptococcus gordonii inorganic pyrophosphatase

Fabrichniy, I.P., Lehtio, L., Salminen, A., Baykov, A.A., Lahti, R., Goldman, A.

(2004) Biochemistry 43: 14403-14411

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Streptococcus gordonii str. Challis
Macromolecule	Probable manganese-dependent inorganic pyrophosphatase (protein)
Unique Ligands	CL, SO4, ZN

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2EPK \| pdb_00002epk	Download File View File

N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii

Langley, D.B.

(2008) J Mol Biology 377: 104-116

Released	2008-03-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptococcus gordonii
Macromolecule	N-acetyl-beta-D-glucosaminidase (protein)
Unique Ligands	SO4

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2EPL \| pdb_00002epl	Download File View File

N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii

Langley, D.B., Harty, D.W.S., Guss, J.M., Collyer, C.A.

(2008) J Mol Biology 377: 104-116

Released	2008-03-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptococcus gordonii
Macromolecule	N-acetyl-beta-D-glucosaminidase (protein)
Unique Ligands	GOL, SO4

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2EPM \| pdb_00002epm	Download File View File

N-acetyl-B-D-glucoasminidase (GCNA) from Stretococcus gordonii

Langley, D.B., Harty, D.W.S., Guss, J.M., Collyer, C.A.

(2008) J Mol Biology 377: 104-116

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Streptococcus gordonii
Macromolecule	N-acetyl-beta-D-glucosaminidase (protein)
Unique Ligands	GOL, HG, SO4

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2EPN \| pdb_00002epn	Download File View File

N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii

Langley, D.B.

(2008) J Mol Biology 377: 104-116

Released	2008-03-11
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Streptococcus gordonii
Macromolecule	N-acetyl-beta-D-glucosaminidase (protein)
Unique Ligands	NGT

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2EPO \| pdb_00002epo	Download File View File

N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii

Langley, D.B.

(2008) J Mol Biology 377: 104-116

Released	2008-03-11
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Streptococcus gordonii
Macromolecule	N-acetyl-beta-D-glucosaminidase (protein)
Unique Ligands	ACY

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2MXX \| pdb_00002mxx	Download File View File

Structure of Amylase binding Protein A of Streptococcous gordonii: a potential receptor for human salivary amylase enzyme

Sethi, A., Mohanty, B., Ramasubbu, N., Gooley, P.R.

(2015) Protein Sci 24: 1013-1018

Released	2015-05-13
Method	SOLUTION NMR
Organisms	Streptococcus gordonii str. Challis
Macromolecule	Amylase-binding protein AbpA (protein)

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2WD6 \| pdb_00002wd6	Download File View File

Crystal structure of the Variable Domain of the Streptococcus gordonii Surface Protein SspB

Forsgren, N., Persson, K.

(2009) Protein Sci 18: 1896

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptococcus gordonii
Macromolecule	AGGLUTININ RECEPTOR (protein)
Unique Ligands	CA, GOL, K

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2WOY \| pdb_00002woy	Download File View File

Crystal structure of the C-terminal domain of Streptococcus gordonii surface protein SspB

Forsgren, N., Persson, K.

(2010) J Mol Biology 397: 740

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus gordonii
Macromolecule	AGGLUTININ RECEPTOR (protein)
Unique Ligands	CA

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2WQS \| pdb_00002wqs	Download File View File

Crystal structure of the C-terminal domain of Streptococcus gordonii surface protein SspB

Forsgren, N., Persson, K.

(2010) J Mol Biology 397: 740

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus gordonii
Macromolecule	AGGLUTININ RECEPTOR (protein)
Unique Ligands	CA, MG

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2WZA \| pdb_00002wza	Download File View File

Two intramolecular isopeptide bonds are identified in the crystal structure of the Streptococcus gordonii SspB C-terminal domain

Forsgren, N., Lamont, R.J., Persson, K.

(2010) J Mol Biology 397: 740

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.082 Å
Organisms	Streptococcus gordonii
Macromolecule	AGGLUTININ RECEPTOR (protein)
Unique Ligands	CA

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3HRS \| pdb_00003hrs	Download File View File

Crystal Structure of the Manganese-activated Repressor ScaR: apo form

Stoll, K.E., Draper, W.E., Kliegman, J.I., Golynskiy, M.V., Brew-Appiah, R.A.T., Brown, H.K., Breyer, W.A., Jakubovics, N.S., Jenkinson, H.F., Brennan, R.B., Cohen, S.M., Glasfeld, A.

(2009) Biochemistry 48: 10308-10320

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus gordonii
Macromolecule	Metalloregulator ScaR (protein)
Unique Ligands	SO4

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3HRT \| pdb_00003hrt	Download File View File

Crystal Structure of ScaR with bound Cd2+

Stoll, K.E., Draper, W.E., Kliegman, J.I., Golynskiy, M.V., Brew-Appiah, R.A.T., Brown, H.K., Breyer, W.A., Jakubovics, N.S., Jenkinson, H.F., Brennan, R.B., Cohen, S.M., Glasfeld, A.

(2009) Biochemistry 48: 10308-10320

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptococcus gordonii
Macromolecule	Metalloregulator ScaR (protein)
Unique Ligands	CD, SO4

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3HRU \| pdb_00003hru	Download File View File

Crystal Structure of ScaR with bound Zn2+

Stoll, K.E., Draper, W.E., Kliegman, J.I., Golynskiy, M.V., Brew-Appiah, R.A.T., Brown, H.K., Breyer, W.A., Jakubovics, N.S., Jenkinson, H.F., Brennan, R.B., Cohen, S.M., Glasfeld, A.

(2009) Biochemistry 48: 10308-10320

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptococcus gordonii
Macromolecule	Metalloregulator ScaR (protein)
Unique Ligands	SO4, ZN

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3QC5 \| pdb_00003qc5	Download File View File

GspB

Pyburn, T.M., Iverson, T.M.

(2011) PLoS Pathog 7: e1002112-e1002112

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	GOL, HDZ, K, NA

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3QC6 \| pdb_00003qc6	Download File View File

GspB

Pyburn, T.M.

(2011) PLoS Pathog 7: e1002112-e1002112

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	CA, GOL, HDZ

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4IGB \| pdb_00004igb	Download File View File

Crystal structure of the N-terminal domain of the Streptococcus gordonii adhesin Sgo0707

Nylander, A., Svensater, G., Senadheera, D.B., Cvitkovitch, D.G., Davies, J.R., Persson, K.

(2013) PLoS One 8: e63768-e63768

Released	2013-06-05
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Streptococcus gordonii str. Challis
Macromolecule	LPXTG cell wall surface protein (protein)
Unique Ligands	ACT, GOL, NA, SO4

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5E9T \| pdb_00005e9t	Download File View File

Crystal structure of GtfA/B complex

Chen, Y., Rapoport, T.A.

(2016) Proc Natl Acad Sci U S A 113: E1190-E1199

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Streptococcus gordonii
Macromolecule	Glycosyltransferase Gtf1 (protein) Glycosyltransferase-stabilizing protein Gtf2 (protein)
Unique Ligands	MG

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5E9U \| pdb_00005e9u	Download File View File

Crystal structure of GtfA/B complex bound to UDP and GlcNAc

Chen, Y., Rapoport, T.A.

(2016) Proc Natl Acad Sci U S A 113: E1190-E1199

Released	2016-03-02
Method	X-RAY DIFFRACTION 3.84 Å
Organisms	Streptococcus gordonii
Macromolecule	Glycosyltransferase Gtf1 (protein) Glycosyltransferase-stabilizing protein Gtf2 (protein)
Unique Ligands	MG, NAG, UDP

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5IUC \| pdb_00005iuc	Download File View File

Crystal structure of the GspB siglec domain with sialyl T antigen bound

Loukachevitch, L.V., Fialkowski, K.P., Wawrzak, Z., Iverson, T.M.

(2011) PLoS Pathog 7: e1002112

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.253 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	MG
Unique branched monosaccharides	A2G, GAL, SIA

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5L2D \| pdb_00005l2d	Download File View File

Streptococcal surface adhesin - CshA NR2

Back, C.R., Race, P.R., Jenkinson, H.F.

(2017) J Biological Chem 292: 1538-1549

Released	2016-12-14
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Streptococcus gordonii str. Challis substr. CH1
Macromolecule	Surface-associated protein CshA (protein)

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5UM7 \| pdb_00005um7	Download File View File

Crystal structure of the reduced state of the thiol-disulfide reductase SdbA from Streptococcus gordonii

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2017-02-15
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Streptococcus gordonii str. Challis substr. CH1
Macromolecule	Thioredoxin signature protein (protein)
Unique Ligands	ACT

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5VAE \| pdb_00005vae	Download File View File

Crystal structure of accessory secretion protein 1 and 3

Chen, Y., Rapoport, T.A., Jeffrey, P.D.

(2018) J Biological Chem 293: 5360-5373

Released	2018-02-21
Method	X-RAY DIFFRACTION 3.106 Å
Organisms	Streptococcus gordonii
Macromolecule	Accessory Sec system protein Asp1 (protein) Accessory Sec system protein Asp3 (protein)